Wall clock time and date at job start Tue Mar 31 2020 05:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99667 * 2 1 4 4 H 1.48497 * 109.46828 * 239.99532 * 3 2 1 5 5 H 1.48497 * 109.47451 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46914 * 119.99882 * 3 2 1 7 7 C 1.37877 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99598 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00020 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.47012 * 299.99329 * 9 7 2 11 11 C 1.53003 * 109.47037 * 59.99513 * 9 7 2 12 12 Cl 1.80305 * 109.46697 * 184.99999 * 11 9 7 13 13 O 1.42897 * 109.47011 * 179.97438 * 9 7 2 14 14 C 1.42899 * 114.00051 * 150.00078 * 13 9 7 15 15 C 1.50701 * 109.47116 * 180.02562 * 14 13 9 16 16 N 1.29764 * 126.34261 * 269.99413 * 15 14 13 17 17 O 1.41314 * 109.74935 * 180.02562 * 16 15 14 18 18 C 1.34794 * 109.45229 * 0.02562 * 17 16 15 19 19 N 1.32506 * 133.15023 * 179.97438 * 18 17 16 20 20 C 1.31639 * 121.69116 * 180.02562 * 19 18 17 21 21 C 1.38646 * 121.51421 * 0.02562 * 20 19 18 22 22 C 1.38193 * 119.38951 * 0.22389 * 21 20 19 23 23 C 1.39804 * 118.06403 * 359.57018 * 22 21 20 24 24 H 0.96995 * 120.00188 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.46918 * 304.99574 * 11 9 7 26 26 H 1.09001 * 109.46910 * 65.00365 * 11 9 7 27 27 H 1.08992 * 109.47126 * 59.99630 * 14 13 9 28 28 H 1.09003 * 109.46680 * 299.99828 * 14 13 9 29 29 H 1.07996 * 119.24783 * 179.97438 * 20 19 18 30 30 H 1.07993 * 120.30255 * 179.97438 * 21 20 19 31 31 H 1.08001 * 120.96597 * 179.70595 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6242 -2.5567 0.8903 11 6 0.3719 -2.5804 -1.2490 12 17 -0.6386 -4.0720 -1.1767 13 8 2.1798 -3.5853 0.0005 14 6 1.6982 -4.7617 0.6532 15 6 2.7531 -5.8364 0.5943 16 7 2.8945 -6.7246 -0.3410 17 8 3.9953 -7.5595 -0.0442 18 6 4.5530 -7.1703 1.1196 19 7 5.5850 -7.6131 1.8228 20 6 5.9407 -7.0502 2.9584 21 6 5.2514 -5.9644 3.4762 22 6 4.1628 -5.4619 2.7891 23 6 3.8068 -6.0732 1.5832 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2756 -1.7049 -1.2952 26 1 1.0039 -2.6124 -2.1365 27 1 0.7950 -5.1108 0.1530 28 1 1.4714 -4.5325 1.6945 29 1 6.7884 -7.4438 3.4996 30 1 5.5600 -5.5180 4.4098 31 1 3.6046 -4.6200 3.1714 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224180666.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:59 Heat of formation + Delta-G solvation = 4.153551 kcal Electronic energy + Delta-G solvation = -19237.531103 eV Core-core repulsion = 15933.253886 eV Total energy + Delta-G solvation = -3304.277217 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 282.056 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.11703 -39.82710 -39.22606 -36.63889 -35.81440 -34.96000 -33.08145 -31.47198 -31.23319 -28.27419 -27.20858 -25.21074 -24.50824 -22.96672 -21.78566 -19.40410 -18.67253 -18.41259 -17.95450 -17.44604 -17.33639 -16.54707 -16.29319 -15.70337 -15.08476 -14.79442 -14.44987 -14.36421 -14.17079 -13.96684 -13.77233 -13.35425 -13.11941 -12.99515 -12.74990 -12.63758 -12.48774 -12.24089 -11.82090 -11.35415 -11.23991 -10.75893 -10.71072 -10.59439 -10.07111 -10.05201 -8.32586 -6.47387 -0.66798 -0.00662 0.71329 0.96441 1.41888 1.47107 1.54973 1.60112 2.30884 2.45388 2.55935 2.86229 3.00190 3.31642 3.37854 3.76790 3.89529 3.97038 4.17107 4.29397 4.41519 4.44535 4.53728 4.59090 4.87063 4.87600 5.01582 5.29144 5.40048 5.56713 5.88163 5.90775 6.32047 6.58074 6.71475 7.24726 8.73681 Molecular weight = 282.06amu Principal moments of inertia in cm(-1) A = 0.017732 B = 0.005156 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.721044 B = 5429.034664 C = 6644.841912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.028 3.972 3 Si 0.972 3.028 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.223 3.777 10 H 0.025 0.975 11 C -0.028 4.028 12 Cl -0.228 7.228 13 O -0.392 6.392 14 C 0.115 3.885 15 C 0.154 3.846 16 N -0.287 5.287 17 O -0.105 6.105 18 C 0.257 3.743 19 N -0.508 5.508 20 C 0.176 3.824 21 C -0.183 4.183 22 C 0.006 3.994 23 C -0.252 4.252 24 H 0.275 0.725 25 H 0.116 0.884 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.224 0.776 30 H 0.199 0.801 31 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.178 -7.255 9.599 14.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.173 4.173 3 Si 0.796 3.204 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.580 4.580 8 H 0.082 0.918 9 C 0.167 3.833 10 H 0.043 0.957 11 C -0.090 4.090 12 Cl -0.202 7.202 13 O -0.311 6.311 14 C 0.037 3.963 15 C -0.028 4.028 16 N -0.035 5.035 17 O -0.110 6.110 18 C 0.075 3.925 19 N -0.229 5.229 20 C 0.014 3.986 21 C -0.203 4.203 22 C -0.021 4.021 23 C -0.258 4.258 24 H 0.084 0.916 25 H 0.134 0.866 26 H 0.088 0.912 27 H 0.105 0.895 28 H 0.113 0.887 29 H 0.240 0.760 30 H 0.216 0.784 31 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 7.114 -8.490 7.927 13.621 hybrid contribution -0.470 1.544 0.409 1.665 sum 6.644 -6.946 8.336 12.723 Atomic orbital electron populations 1.69872 1.06975 1.28891 1.48890 1.25667 0.95854 1.02417 0.93366 0.85382 0.78265 0.77659 0.79105 1.19855 1.20266 1.19135 1.21193 0.93991 0.89452 1.53341 0.91783 1.19903 0.87113 0.83909 0.92409 0.95698 1.25609 0.95065 0.86183 1.02190 1.98604 1.75338 1.47370 1.98907 1.87898 1.43668 1.21496 1.78040 1.21233 0.91995 0.83067 0.99965 1.24518 0.94366 0.93688 0.90200 1.80040 0.99676 1.05464 1.18307 1.89139 1.38854 1.49421 1.33617 1.20783 0.92323 0.91360 0.87999 1.66806 1.13433 1.33360 1.09296 1.23897 0.97302 0.90220 0.87140 1.22625 0.95588 0.98390 1.03682 1.21718 0.94932 0.96481 0.88998 1.21528 0.99892 1.02631 1.01739 0.91590 0.86612 0.91155 0.89522 0.88724 0.75985 0.78430 0.81544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.12 11.29 21.45 0.24 -45.88 16 2 C 0.03 1.39 5.29 84.65 0.45 1.84 16 3 Si 0.97 39.32 29.54 68.60 2.03 41.35 16 4 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 7 C -0.54 -27.58 8.89 25.60 0.23 -27.35 16 8 H 0.06 3.31 7.81 -2.91 -0.02 3.29 16 9 C 0.22 10.53 2.38 29.85 0.07 10.60 16 10 H 0.03 1.23 7.79 -2.39 -0.02 1.21 16 11 C -0.03 -1.25 6.17 71.98 0.44 -0.81 16 12 Cl -0.23 -9.14 26.09 -2.72 -0.07 -9.21 16 13 O -0.39 -17.46 9.94 -148.98 -1.48 -18.94 16 14 C 0.11 4.23 6.14 71.24 0.44 4.67 16 15 C 0.15 5.59 7.09 45.00 0.32 5.91 16 16 N -0.29 -11.38 12.81 -43.56 -0.56 -11.94 16 17 O -0.11 -4.06 12.05 30.23 0.36 -3.69 16 18 C 0.26 8.55 8.64 85.15 0.74 9.29 16 19 N -0.51 -13.83 10.38 -308.21 -3.20 -17.02 16 20 C 0.18 2.84 11.15 84.82 0.95 3.78 16 21 C -0.18 -2.59 10.10 22.36 0.23 -2.37 16 22 C 0.01 0.13 10.23 22.64 0.23 0.37 16 23 C -0.25 -7.85 6.34 -20.20 -0.13 -7.98 16 24 H 0.27 13.20 8.31 -92.71 -0.77 12.43 16 25 H 0.12 5.64 5.95 -2.39 -0.01 5.62 16 26 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 27 H 0.09 3.27 5.09 -2.39 -0.01 3.25 16 28 H 0.09 2.99 8.09 -2.39 -0.02 2.97 16 29 H 0.22 1.26 8.06 -2.91 -0.02 1.23 16 30 H 0.20 0.92 8.06 -2.91 -0.02 0.90 16 31 H 0.17 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -63.00 291.19 2.46 -60.55 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 1.17 Total: 6.82 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: 3.96 Total: -2.04 kcal Atomic # 7 Polarization: -71.33 SS G_CDS: -3.52 Total: -74.84 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -1.12 Total: -22.64 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.35 kcal Atomic # 17 Polarization: -9.14 SS G_CDS: -0.07 Total: -9.21 kcal Total: -63.00 2.46 -60.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224180666.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.702 kcal (2) G-P(sol) polarization free energy of solvation -63.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds