Wall clock time and date at job start Tue Mar 31 2020 05:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00124 * 2 1 4 4 H 1.48502 * 109.46841 * 264.99572 * 3 2 1 5 5 H 1.48506 * 109.47001 * 24.99237 * 3 2 1 6 6 H 1.48501 * 109.47123 * 144.99339 * 3 2 1 7 7 C 1.37879 * 119.99801 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99903 * 189.46611 * 7 2 1 9 9 C 1.50702 * 120.00070 * 9.47009 * 7 2 1 10 10 H 1.09000 * 109.46968 * 305.44737 * 9 7 2 11 11 C 1.52995 * 109.47247 * 65.45380 * 9 7 2 12 12 Cl 1.80299 * 109.47116 * 185.07689 * 11 9 7 13 13 O 1.42905 * 109.47144 * 185.45229 * 9 7 2 14 14 C 1.35281 * 117.00399 * 149.99683 * 13 9 7 15 15 N 1.30770 * 125.03900 * 359.97438 * 14 13 9 16 16 C 1.35898 * 109.65189 * 179.97438 * 15 14 13 17 17 C 1.39844 * 133.40414 * 179.97438 * 16 15 14 18 18 C 1.37637 * 119.87534 * 179.70234 * 17 16 15 19 19 C 1.38710 * 120.54661 * 0.62614 * 18 17 16 20 20 C 1.38380 * 120.36782 * 359.40064 * 19 18 17 21 21 O 1.35956 * 120.12527 * 180.25513 * 20 19 18 22 22 C 1.39121 * 119.74777 * 0.28231 * 20 19 18 23 23 N 1.36321 * 125.04439 * 179.97438 * 14 13 9 24 24 H 0.96994 * 126.38312 * 0.02861 * 23 14 13 25 25 H 0.96998 * 120.00165 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46912 * 305.07525 * 11 9 7 27 27 H 1.09001 * 109.47427 * 65.07332 * 11 9 7 28 28 H 1.08000 * 120.06280 * 0.04039 * 17 16 15 29 29 H 1.07999 * 119.72890 * 180.30490 * 18 17 16 30 30 H 1.08000 * 119.81516 * 179.68809 * 19 18 17 31 31 H 0.96703 * 113.99342 * 90.00665 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6024 1.9852 -1.3948 5 1 1.3977 2.6809 0.5916 6 1 3.4898 1.4730 0.8032 7 6 2.0045 -1.1941 0.0005 8 1 3.0735 -1.2004 0.1544 9 6 1.2664 -2.4904 -0.2136 10 1 0.4565 -2.5714 0.5114 11 6 0.6881 -2.5201 -1.6298 12 17 -0.3190 -4.0012 -1.8368 13 8 2.1684 -3.5858 -0.0444 14 6 1.6462 -4.7463 0.4144 15 7 0.3872 -4.9372 0.7123 16 6 0.2077 -6.2140 1.1416 17 6 -0.9098 -6.9334 1.5767 18 6 -0.7738 -8.2506 1.9519 19 6 0.4669 -8.8697 1.9148 20 6 1.5837 -8.1732 1.4876 21 8 2.7965 -8.7864 1.4483 22 6 1.4609 -6.8430 1.0990 23 7 2.3542 -5.8902 0.6349 24 1 3.3057 -6.0142 0.4934 25 1 -0.4850 0.8400 -0.0004 26 1 0.0709 -1.6358 -1.7888 27 1 1.5022 -2.5300 -2.3546 28 1 -1.8788 -6.4578 1.6130 29 1 -1.6394 -8.8053 2.2828 30 1 0.5610 -9.9023 2.2167 31 1 2.9903 -9.2211 0.6065 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234447599.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:46 Heat of formation + Delta-G solvation = -16.457032 kcal Electronic energy + Delta-G solvation = -19561.956716 eV Core-core repulsion = 16256.785757 eV Total energy + Delta-G solvation = -3305.170959 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 282.056 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.71256 -38.65200 -37.47048 -35.83999 -34.73821 -33.38476 -32.26047 -29.78931 -28.82548 -28.40054 -25.32641 -22.89797 -22.20192 -21.78238 -20.30277 -18.73960 -17.58826 -17.19907 -16.52206 -16.06611 -15.57521 -15.01980 -14.80841 -14.45771 -14.16475 -13.54002 -13.42998 -12.91033 -12.33407 -12.17183 -11.85867 -11.61621 -11.31157 -11.15072 -11.09129 -10.87272 -10.63896 -10.30552 -10.25667 -9.86771 -9.43055 -9.28107 -9.01505 -8.68060 -7.95481 -7.42461 -6.44860 -4.52948 1.18600 1.69783 2.58136 3.11813 3.19775 3.22295 3.23358 3.42657 4.03178 4.08613 4.27916 4.41582 4.77329 4.90102 5.12347 5.34633 5.54328 5.65275 5.92017 6.10875 6.13192 6.21160 6.34084 6.59302 6.68154 6.74164 6.93332 7.15917 7.32625 7.52518 7.62819 7.66951 8.17553 8.38460 8.64374 9.13084 10.62798 Molecular weight = 282.06amu Principal moments of inertia in cm(-1) A = 0.027276 B = 0.004889 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.296774 B = 5725.704058 C = 6083.303902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.070 3.930 3 Si 0.914 3.086 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.534 4.534 8 H 0.075 0.925 9 C 0.225 3.775 10 H 0.077 0.923 11 C -0.032 4.032 12 Cl -0.220 7.220 13 O -0.297 6.297 14 C 0.497 3.503 15 N -0.512 5.512 16 C 0.101 3.899 17 C -0.085 4.085 18 C -0.113 4.113 19 C -0.151 4.151 20 C 0.116 3.884 21 O -0.500 6.500 22 C 0.012 3.988 23 N -0.595 5.595 24 H 0.422 0.578 25 H 0.273 0.727 26 H 0.116 0.884 27 H 0.073 0.927 28 H 0.130 0.870 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.449 -13.009 -0.094 13.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.136 4.136 3 Si 0.740 3.260 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.572 4.572 8 H 0.093 0.907 9 C 0.170 3.830 10 H 0.095 0.905 11 C -0.095 4.095 12 Cl -0.194 7.194 13 O -0.199 6.199 14 C 0.194 3.806 15 N -0.249 5.249 16 C -0.019 4.019 17 C -0.105 4.105 18 C -0.134 4.134 19 C -0.171 4.171 20 C 0.069 3.931 21 O -0.309 6.309 22 C -0.097 4.097 23 N -0.217 5.217 24 H 0.261 0.739 25 H 0.083 0.917 26 H 0.134 0.866 27 H 0.091 0.909 28 H 0.148 0.852 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 0.840 -11.976 0.303 12.010 hybrid contribution 1.412 0.142 -0.675 1.572 sum 2.252 -11.835 -0.372 12.053 Atomic orbital electron populations 1.69978 1.05975 1.28232 1.46823 1.24965 0.95087 0.99623 0.93893 0.86239 0.79651 0.81395 0.78707 1.20002 1.20729 1.19455 1.20894 0.95465 0.88094 1.52726 0.90655 1.20667 0.89766 0.79744 0.92794 0.90532 1.25468 0.95142 0.87743 1.01144 1.98664 1.75511 1.47163 1.98106 1.85993 1.39798 1.16256 1.77861 1.21054 0.84825 0.83463 0.91219 1.71187 1.12404 1.15865 1.25491 1.18898 0.92066 0.90516 1.00426 1.20258 0.97054 0.93313 0.99901 1.20649 0.96843 0.94269 1.01608 1.20899 0.91248 1.00120 1.04831 1.17256 0.85397 0.87247 1.03233 1.84865 1.33206 1.72773 1.40049 1.18995 0.91254 0.91999 1.07410 1.42412 1.11146 1.08758 1.59372 0.73945 0.91740 0.86611 0.90874 0.85219 0.85370 0.85287 0.76234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.17 12.16 55.43 0.67 -22.50 16 2 C 0.07 1.77 5.16 -17.82 -0.09 1.68 16 3 Si 0.91 19.69 29.55 -169.99 -5.02 14.66 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.53 -13.83 8.81 -34.44 -0.30 -14.13 16 8 H 0.08 1.93 7.83 -52.48 -0.41 1.52 16 9 C 0.22 5.55 2.14 -27.88 -0.06 5.49 16 10 H 0.08 2.11 7.18 -51.93 -0.37 1.74 16 11 C -0.03 -0.72 6.22 37.16 0.23 -0.49 16 12 Cl -0.22 -4.75 26.10 -51.86 -1.35 -6.10 16 13 O -0.30 -6.77 9.80 -17.54 -0.17 -6.94 16 14 C 0.50 10.43 7.93 -88.97 -0.71 9.73 16 15 N -0.51 -11.11 8.10 -12.26 -0.10 -11.21 16 16 C 0.10 1.90 7.22 -84.70 -0.61 1.29 16 17 C -0.09 -1.33 10.10 -39.20 -0.40 -1.73 16 18 C -0.11 -1.42 10.01 -39.63 -0.40 -1.81 16 19 C -0.15 -1.87 9.97 -39.35 -0.39 -2.27 16 20 C 0.12 1.64 6.71 -39.20 -0.26 1.38 16 21 O -0.50 -5.96 13.51 -19.60 -0.26 -6.23 16 22 C 0.01 0.20 7.24 -83.70 -0.61 -0.40 16 23 N -0.59 -10.24 6.27 -11.82 -0.07 -10.32 16 24 H 0.42 5.95 8.96 -40.82 -0.37 5.58 16 25 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 26 H 0.12 2.80 6.80 -51.93 -0.35 2.44 16 27 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 28 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 29 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.38 2.75 9.06 45.56 0.41 3.16 16 LS Contribution 288.80 15.07 4.35 4.35 Total: -1.00 -29.34 288.80 -7.47 -36.81 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -1.92 Total: 8.73 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -3.59 Total: -1.27 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: 0.50 Total: -44.02 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -0.44 Total: -13.17 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.66 kcal Atomic # 17 Polarization: -4.75 SS G_CDS: -1.35 Total: -6.10 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.34 -7.47 -36.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234447599.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.357 kcal (2) G-P(sol) polarization free energy of solvation -29.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds