Wall clock time and date at job start Tue Mar 31 2020 05:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86800 * 119.99960 * 2 1 4 4 H 1.48504 * 109.46753 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46910 * 299.99702 * 3 2 1 6 6 H 1.48501 * 109.46988 * 60.00029 * 3 2 1 7 7 C 1.40048 * 119.99888 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99702 * 197.21542 * 7 2 1 9 9 C 1.41530 * 120.00078 * 17.20721 * 7 2 1 10 10 C 1.41157 * 120.98447 * 203.18607 * 9 7 2 11 11 C 1.37719 * 119.08283 * 179.97438 * 10 9 7 12 12 N 1.31934 * 121.16616 * 0.02562 * 11 10 9 13 13 C 1.32830 * 122.19778 * 0.02562 * 12 11 10 14 14 C 1.48270 * 119.61600 * 180.02562 * 13 12 11 15 15 C 1.39910 * 120.09921 * 184.97548 * 14 13 12 16 16 C 1.35886 * 120.64677 * 179.97438 * 15 14 13 17 17 C 1.41132 * 120.60034 * 359.97438 * 16 15 14 18 18 N 1.34587 * 129.51856 * 180.02562 * 17 16 15 19 19 C 1.27958 * 117.88619 * 179.97438 * 18 17 16 20 20 S 1.70651 * 111.52851 * 0.02562 * 19 18 17 21 21 C 1.40031 * 118.70872 * 0.02562 * 17 16 15 22 22 C 1.38844 * 120.10183 * 4.69753 * 14 13 12 23 23 C 1.38958 * 120.76269 * 359.97410 * 13 12 11 24 24 H 0.96995 * 120.00020 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.45798 * 0.02562 * 10 9 7 26 26 H 1.07997 * 119.41965 * 180.02562 * 11 10 9 27 27 H 1.08001 * 119.67575 * 0.02562 * 15 14 13 28 28 H 1.07997 * 119.70389 * 180.02562 * 16 15 14 29 29 H 1.07993 * 124.24000 * 179.97438 * 19 18 17 30 30 H 1.07997 * 120.06513 * 0.02562 * 22 14 13 31 31 H 1.07998 * 120.62140 * 179.75084 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.7014 1.3463 0.0006 5 1 1.8826 2.3964 -1.2125 6 1 1.8826 2.3964 1.2125 7 6 2.0076 -1.2129 0.0005 8 1 3.0513 -1.2337 0.2774 9 6 1.3474 -2.4113 -0.3615 10 6 1.8282 -3.6655 0.0726 11 6 1.1549 -4.8068 -0.3025 12 7 0.0745 -4.7453 -1.0571 13 6 -0.4194 -3.5920 -1.4935 14 6 -1.6379 -3.5895 -2.3383 15 6 -2.1072 -2.3922 -2.8892 16 6 -3.2224 -2.3771 -3.6655 17 6 -3.9287 -3.5697 -3.9316 18 7 -5.0397 -3.7612 -4.6667 19 6 -5.4970 -4.9525 -4.7609 20 16 -4.5390 -6.0620 -3.8871 21 6 -3.4581 -4.7675 -3.3797 22 6 -2.3133 -4.7762 -2.5899 23 6 0.1920 -2.3878 -1.1664 24 1 -0.4850 0.8400 -0.0004 25 1 2.7114 -3.7290 0.6909 26 1 1.5178 -5.7692 0.0268 27 1 -1.5776 -1.4709 -2.6963 28 1 -3.5710 -1.4443 -4.0834 29 1 -6.3793 -5.2221 -5.3222 30 1 -1.9524 -5.7036 -2.1701 31 1 -0.2092 -1.4517 -1.5257 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240341588.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:16 Heat of formation + Delta-G solvation = 77.304610 kcal Electronic energy + Delta-G solvation = -18098.193720 eV Core-core repulsion = 15242.274292 eV Total energy + Delta-G solvation = -2855.919429 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.052 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.12070 -38.52675 -36.45507 -34.26411 -31.43547 -30.89248 -30.47840 -28.04838 -26.11490 -24.84072 -22.94077 -22.13326 -21.18813 -20.29948 -18.29083 -17.56622 -16.28669 -15.68112 -15.56059 -14.89386 -14.55514 -14.30803 -14.26393 -13.63325 -13.41953 -13.22149 -12.83689 -12.64477 -12.26633 -11.70571 -11.62263 -11.37130 -11.26412 -11.01514 -10.60576 -10.37166 -10.01026 -9.93464 -9.56649 -9.54843 -8.81411 -8.20919 -8.12705 -8.00510 -7.23561 -6.97828 -4.73178 0.51829 1.42505 1.51309 1.87659 2.19815 2.66906 2.92198 2.95827 3.00848 3.16231 3.75589 4.03531 4.14927 4.56458 4.89916 5.02854 5.23667 5.53529 5.54529 5.65020 5.85153 5.93211 6.15365 6.35150 6.46053 6.57821 6.65595 6.79376 6.92568 6.96207 7.05664 7.21093 7.29831 7.69785 7.72723 7.94342 8.28697 8.56465 8.59837 9.40466 9.92164 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.024930 B = 0.004494 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.858576 B = 6229.414261 C = 7266.236113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.077 3.923 3 Si 0.912 3.088 4 H -0.258 1.258 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.451 4.451 8 H 0.084 0.916 9 C 0.123 3.877 10 C -0.270 4.270 11 C 0.106 3.894 12 N -0.565 5.565 13 C 0.130 3.870 14 C 0.018 3.982 15 C -0.091 4.091 16 C -0.067 4.067 17 C 0.058 3.942 18 N -0.461 5.461 19 C 0.049 3.951 20 S 0.075 5.925 21 C -0.170 4.170 22 C -0.056 4.056 23 C -0.182 4.182 24 H 0.285 0.715 25 H 0.103 0.897 26 H 0.124 0.876 27 H 0.144 0.856 28 H 0.132 0.868 29 H 0.198 0.802 30 H 0.141 0.859 31 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.416 -4.230 -5.844 9.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.143 4.143 3 Si 0.736 3.264 4 H -0.182 1.182 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.482 4.482 8 H 0.103 0.897 9 C 0.115 3.885 10 C -0.293 4.293 11 C -0.050 4.050 12 N -0.280 5.280 13 C 0.000 4.000 14 C 0.014 3.986 15 C -0.111 4.111 16 C -0.088 4.088 17 C -0.061 4.061 18 N -0.173 5.173 19 C -0.256 4.256 20 S 0.327 5.673 21 C -0.289 4.289 22 C -0.080 4.080 23 C -0.205 4.205 24 H 0.097 0.903 25 H 0.121 0.879 26 H 0.142 0.858 27 H 0.162 0.838 28 H 0.150 0.850 29 H 0.215 0.785 30 H 0.159 0.841 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.488 -5.504 -6.247 11.198 hybrid contribution 1.097 2.315 0.489 2.608 sum -6.391 -3.189 -5.758 9.174 Atomic orbital electron populations 1.69754 1.07755 1.29834 1.33487 1.26005 0.94800 1.01720 0.91751 0.86187 0.81027 0.80352 0.78864 1.18176 1.19381 1.19719 1.19679 0.98163 0.90714 1.39622 0.89748 1.17786 0.90509 0.92476 0.87696 1.21933 1.04854 0.93803 1.08698 1.21815 0.91628 0.96898 0.94631 1.67251 1.15254 1.28071 1.17454 1.19126 0.93605 0.90177 0.97126 1.18767 0.93414 0.92010 0.94454 1.20989 0.95557 0.98815 0.95785 1.20212 0.94449 0.95447 0.98674 1.19213 0.93432 0.94302 0.99124 1.66131 1.11400 1.22189 1.17577 1.27902 1.04035 0.90855 1.02794 1.83829 1.21899 1.12167 1.49403 1.23701 1.02608 0.95879 1.06672 1.20468 0.91625 0.99566 0.96317 1.22295 0.99468 0.97095 1.01639 0.90348 0.87867 0.85837 0.83831 0.84985 0.78517 0.84089 0.84843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.61 10.91 55.55 0.61 -18.01 16 2 C 0.08 1.79 5.20 -17.34 -0.09 1.70 16 3 Si 0.91 17.25 29.59 -169.99 -5.03 12.22 16 4 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 5 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 6 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 7 C -0.45 -11.13 9.12 -37.65 -0.34 -11.47 16 8 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 9 C 0.12 3.10 5.61 -106.56 -0.60 2.51 16 10 C -0.27 -6.27 9.90 -38.66 -0.38 -6.65 16 11 C 0.11 2.34 11.15 -17.70 -0.20 2.14 16 12 N -0.57 -13.08 9.40 -9.95 -0.09 -13.18 16 13 C 0.13 3.01 6.72 -83.04 -0.56 2.46 16 14 C 0.02 0.37 5.87 -104.92 -0.62 -0.24 16 15 C -0.09 -1.66 9.31 -39.80 -0.37 -2.03 16 16 C -0.07 -1.12 10.03 -39.33 -0.39 -1.51 16 17 C 0.06 1.01 7.00 -84.89 -0.59 0.41 16 18 N -0.46 -7.27 10.56 -12.89 -0.14 -7.41 16 19 C 0.05 0.61 12.10 51.15 0.62 1.23 16 20 S 0.07 0.97 23.17 -107.50 -2.49 -1.52 16 21 C -0.17 -2.92 6.54 -38.59 -0.25 -3.17 16 22 C -0.06 -1.06 9.60 -39.04 -0.37 -1.43 16 23 C -0.18 -4.46 8.13 -38.34 -0.31 -4.77 16 24 H 0.29 6.11 8.29 -40.82 -0.34 5.77 16 25 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 26 H 0.12 2.30 8.06 -52.49 -0.42 1.87 16 27 H 0.14 2.59 6.18 -52.49 -0.32 2.27 16 28 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 29 H 0.20 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.14 2.64 7.53 -52.49 -0.40 2.24 16 31 H 0.13 3.23 4.32 -52.49 -0.23 3.00 16 LS Contribution 287.69 15.07 4.34 4.34 Total: -1.00 -27.57 287.69 -9.46 -37.03 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -2.19 Total: 7.37 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: -4.46 Total: -20.84 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.38 Total: -38.60 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.03 Total: 12.22 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.49 Total: -1.52 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.57 -9.46 -37.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240341588.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.338 kcal (2) G-P(sol) polarization free energy of solvation -27.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds