Wall clock time and date at job start Tue Mar 31 2020 05:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86800 * 119.99960 * 2 1 4 4 H 1.48504 * 109.46753 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46910 * 299.99702 * 3 2 1 6 6 H 1.48501 * 109.46988 * 60.00029 * 3 2 1 7 7 C 1.40048 * 119.99888 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99702 * 197.21542 * 7 2 1 9 9 C 1.41530 * 120.00078 * 17.20721 * 7 2 1 10 10 C 1.41157 * 120.98447 * 203.18607 * 9 7 2 11 11 C 1.37719 * 119.08283 * 179.97438 * 10 9 7 12 12 N 1.31934 * 121.16616 * 0.02562 * 11 10 9 13 13 C 1.32830 * 122.19778 * 0.02562 * 12 11 10 14 14 C 1.48270 * 119.61600 * 180.02562 * 13 12 11 15 15 C 1.39910 * 120.09921 * 184.97548 * 14 13 12 16 16 C 1.35886 * 120.64677 * 179.97438 * 15 14 13 17 17 C 1.41132 * 120.60034 * 359.97438 * 16 15 14 18 18 N 1.34587 * 129.51856 * 180.02562 * 17 16 15 19 19 C 1.27958 * 117.88619 * 179.97438 * 18 17 16 20 20 S 1.70651 * 111.52851 * 0.02562 * 19 18 17 21 21 C 1.40031 * 118.70872 * 0.02562 * 17 16 15 22 22 C 1.38844 * 120.10183 * 4.69753 * 14 13 12 23 23 C 1.38958 * 120.76269 * 359.97410 * 13 12 11 24 24 H 0.96995 * 120.00020 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.45798 * 0.02562 * 10 9 7 26 26 H 1.07997 * 119.41965 * 180.02562 * 11 10 9 27 27 H 1.08001 * 119.67575 * 0.02562 * 15 14 13 28 28 H 1.07997 * 119.70389 * 180.02562 * 16 15 14 29 29 H 1.07993 * 124.24000 * 179.97438 * 19 18 17 30 30 H 1.07997 * 120.06513 * 0.02562 * 22 14 13 31 31 H 1.07998 * 120.62140 * 179.75084 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.7014 1.3463 0.0006 5 1 1.8826 2.3964 -1.2125 6 1 1.8826 2.3964 1.2125 7 6 2.0076 -1.2129 0.0005 8 1 3.0513 -1.2337 0.2774 9 6 1.3474 -2.4113 -0.3615 10 6 1.8282 -3.6655 0.0726 11 6 1.1549 -4.8068 -0.3025 12 7 0.0745 -4.7453 -1.0571 13 6 -0.4194 -3.5920 -1.4935 14 6 -1.6379 -3.5895 -2.3383 15 6 -2.1072 -2.3922 -2.8892 16 6 -3.2224 -2.3771 -3.6655 17 6 -3.9287 -3.5697 -3.9316 18 7 -5.0397 -3.7612 -4.6667 19 6 -5.4970 -4.9525 -4.7609 20 16 -4.5390 -6.0620 -3.8871 21 6 -3.4581 -4.7675 -3.3797 22 6 -2.3133 -4.7762 -2.5899 23 6 0.1920 -2.3878 -1.1664 24 1 -0.4850 0.8400 -0.0004 25 1 2.7114 -3.7290 0.6909 26 1 1.5178 -5.7692 0.0268 27 1 -1.5776 -1.4709 -2.6963 28 1 -3.5710 -1.4443 -4.0834 29 1 -6.3793 -5.2221 -5.3222 30 1 -1.9524 -5.7036 -2.1701 31 1 -0.2092 -1.4517 -1.5257 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240341588.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:15 Heat of formation + Delta-G solvation = 62.673000 kcal Electronic energy + Delta-G solvation = -18098.828194 eV Core-core repulsion = 15242.274292 eV Total energy + Delta-G solvation = -2856.553903 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.052 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.43335 -40.19149 -37.82426 -36.03248 -33.04168 -32.42176 -32.04837 -29.54041 -27.91732 -26.12263 -24.41944 -23.67612 -22.76731 -21.81309 -19.69410 -19.12094 -17.69616 -17.26444 -17.01680 -16.40456 -15.90629 -15.87274 -15.78838 -15.14684 -14.83423 -14.53391 -14.51708 -14.27000 -13.58241 -13.25388 -13.22698 -12.85797 -12.82877 -12.68324 -11.97645 -11.93388 -11.72021 -11.28415 -11.17689 -10.68296 -10.32040 -10.01244 -9.92654 -9.29215 -8.82199 -8.68756 -6.59155 -0.76747 0.14032 0.26936 0.67918 0.74090 0.95750 1.39431 1.43740 1.54480 1.62396 2.17207 2.56483 2.85490 3.05015 3.47216 3.61897 3.72703 4.09840 4.16338 4.27579 4.39233 4.52952 4.71480 4.83204 4.89485 4.97768 5.06346 5.15244 5.20360 5.38128 5.43351 5.58874 5.65604 5.89524 6.15610 6.46768 6.56186 6.75070 6.77073 7.62100 8.20911 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.024930 B = 0.004494 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.858576 B = 6229.414261 C = 7266.236113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.041 3.959 3 Si 0.985 3.015 4 H -0.257 1.257 5 H -0.261 1.261 6 H -0.265 1.265 7 C -0.483 4.483 8 H 0.085 0.915 9 C 0.095 3.905 10 C -0.288 4.288 11 C 0.103 3.897 12 N -0.576 5.576 13 C 0.129 3.871 14 C -0.020 4.020 15 C -0.093 4.093 16 C -0.069 4.069 17 C 0.060 3.940 18 N -0.492 5.492 19 C 0.074 3.926 20 S 0.132 5.868 21 C -0.203 4.203 22 C -0.051 4.051 23 C -0.210 4.210 24 H 0.294 0.706 25 H 0.116 0.884 26 H 0.159 0.841 27 H 0.137 0.863 28 H 0.154 0.846 29 H 0.249 0.751 30 H 0.136 0.864 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.131 -4.775 -7.067 11.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.177 4.177 3 Si 0.805 3.195 4 H -0.180 1.180 5 H -0.186 1.186 6 H -0.189 1.189 7 C -0.513 4.513 8 H 0.103 0.897 9 C 0.087 3.913 10 C -0.311 4.311 11 C -0.052 4.052 12 N -0.291 5.291 13 C -0.001 4.001 14 C -0.024 4.024 15 C -0.114 4.114 16 C -0.089 4.089 17 C -0.060 4.060 18 N -0.205 5.205 19 C -0.230 4.230 20 S 0.386 5.614 21 C -0.321 4.321 22 C -0.075 4.075 23 C -0.233 4.233 24 H 0.106 0.894 25 H 0.134 0.866 26 H 0.177 0.823 27 H 0.154 0.846 28 H 0.171 0.829 29 H 0.265 0.735 30 H 0.154 0.846 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.200 -6.080 -7.460 13.314 hybrid contribution 1.398 2.278 0.762 2.779 sum -7.803 -3.801 -6.698 10.964 Atomic orbital electron populations 1.69798 1.09120 1.31256 1.33373 1.26835 0.95505 1.04668 0.90704 0.85104 0.79463 0.75742 0.79168 1.18022 1.18577 1.18944 1.19948 0.98462 0.91772 1.41144 0.89695 1.18212 0.91229 0.93641 0.88234 1.22157 1.05709 0.93737 1.09460 1.22370 0.91002 0.98099 0.93695 1.67373 1.15746 1.28006 1.17969 1.19540 0.94192 0.89803 0.96596 1.18737 0.93676 0.93610 0.96395 1.20907 0.96234 0.97944 0.96320 1.20385 0.93776 0.96642 0.98133 1.19483 0.93696 0.94321 0.98473 1.66239 1.11498 1.23801 1.18987 1.28879 1.04027 0.89660 1.00435 1.83707 1.19776 1.09914 1.48051 1.23973 1.03035 0.98221 1.06868 1.20377 0.92127 0.98644 0.96310 1.22302 1.00360 0.97512 1.03101 0.89450 0.86565 0.82340 0.84577 0.82859 0.73542 0.84615 0.85443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.70 10.91 21.84 0.24 -39.46 16 2 C 0.04 1.92 5.20 85.30 0.44 2.37 16 3 Si 0.99 35.61 29.59 68.60 2.03 37.64 16 4 H -0.26 -9.12 7.11 99.48 0.71 -8.42 16 5 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 6 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 7 C -0.48 -24.74 9.12 23.52 0.21 -24.52 16 8 H 0.08 4.16 7.90 -2.91 -0.02 4.14 16 9 C 0.09 4.99 5.61 -21.12 -0.12 4.87 16 10 C -0.29 -13.78 9.90 22.86 0.23 -13.56 16 11 C 0.10 4.62 11.15 84.55 0.94 5.56 16 12 N -0.58 -27.31 9.40 -185.40 -1.74 -29.06 16 13 C 0.13 6.26 6.72 41.84 0.28 6.54 16 14 C -0.02 -0.83 5.87 -20.06 -0.12 -0.95 16 15 C -0.09 -3.54 9.31 22.13 0.21 -3.33 16 16 C -0.07 -2.29 10.03 22.43 0.23 -2.07 16 17 C 0.06 1.99 7.00 39.87 0.28 2.26 16 18 N -0.49 -14.05 10.56 -194.58 -2.06 -16.11 16 19 C 0.07 1.50 12.10 130.81 1.58 3.08 16 20 S 0.13 3.00 23.17 -56.49 -1.31 1.69 16 21 C -0.20 -6.68 6.54 22.91 0.15 -6.53 16 22 C -0.05 -1.95 9.60 22.62 0.22 -1.74 16 23 C -0.21 -10.85 8.13 23.08 0.19 -10.67 16 24 H 0.29 12.87 8.29 -92.71 -0.77 12.10 16 25 H 0.12 5.07 8.06 -2.91 -0.02 5.04 16 26 H 0.16 5.76 8.06 -2.91 -0.02 5.74 16 27 H 0.14 5.26 6.18 -2.91 -0.02 5.24 16 28 H 0.15 4.30 8.06 -2.91 -0.02 4.28 16 29 H 0.25 2.33 8.06 -2.91 -0.02 2.31 16 30 H 0.14 5.15 7.53 -2.91 -0.02 5.13 16 31 H 0.13 6.58 4.32 -2.91 -0.01 6.56 16 Total: -1.00 -61.75 287.69 3.06 -58.68 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: 1.18 Total: 25.27 kcal Atomic # 6 Polarization: -43.39 SS G_CDS: 4.72 Total: -38.67 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -3.56 Total: -84.62 kcal Atomic # 14 Polarization: 35.61 SS G_CDS: 2.03 Total: 37.64 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -1.31 Total: 1.69 kcal Total: -61.75 3.06 -58.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240341588.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.355 kcal (2) G-P(sol) polarization free energy of solvation -61.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds