Wall clock time and date at job start Tue Mar 31 2020 05:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30757 * 1 3 3 Si 1.86798 * 119.99851 * 2 1 4 4 H 1.48494 * 109.47129 * 269.99861 * 3 2 1 5 5 H 1.48500 * 109.47266 * 30.00498 * 3 2 1 6 6 H 1.48506 * 109.46848 * 150.00220 * 3 2 1 7 7 C 1.40010 * 119.99638 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99478 * 179.97438 * 7 2 1 9 9 C 1.41356 * 120.00005 * 0.02562 * 7 2 1 10 10 C 1.40722 * 119.76198 * 179.97438 * 9 7 2 11 11 C 1.38270 * 119.19715 * 179.97438 * 10 9 7 12 12 C 1.38709 * 118.69829 * 359.73190 * 11 10 9 13 13 C 1.39931 * 119.45706 * 0.55461 * 12 11 10 14 14 C 1.48197 * 119.61094 * 179.70653 * 13 12 11 15 15 C 1.39950 * 120.10753 * 4.73024 * 14 13 12 16 16 C 1.35865 * 120.64616 * 179.97438 * 15 14 13 17 17 C 1.41149 * 120.60547 * 359.97438 * 16 15 14 18 18 N 1.34553 * 129.52286 * 179.97438 * 17 16 15 19 19 C 1.27979 * 117.89510 * 180.02562 * 18 17 16 20 20 S 1.70638 * 111.52979 * 0.02562 * 19 18 17 21 21 C 1.40067 * 118.71055 * 0.02562 * 17 16 15 22 22 C 1.38902 * 120.10226 * 184.46340 * 14 13 12 23 23 N 1.32289 * 120.77713 * 359.43192 * 13 12 11 24 24 H 0.96996 * 119.99938 * 359.97438 * 1 2 3 25 25 H 1.08002 * 120.39885 * 0.02562 * 10 9 7 26 26 H 1.07998 * 120.65656 * 179.97438 * 11 10 9 27 27 H 1.07996 * 120.27336 * 180.28548 * 12 11 10 28 28 H 1.08005 * 119.67094 * 359.95469 * 15 14 13 29 29 H 1.08001 * 119.70057 * 179.97438 * 16 15 14 30 30 H 1.07999 * 124.23450 * 179.97438 * 19 18 17 31 31 H 1.08000 * 120.07135 * 359.97438 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0464 -1.4000 5 1 1.4390 2.6526 0.7001 6 1 3.5391 1.4401 0.7000 7 6 2.0075 -1.2126 0.0005 8 1 3.0876 -1.2125 0.0001 9 6 1.3007 -2.4367 0.0005 10 6 2.0093 -3.6525 0.0005 11 6 1.3061 -4.8430 0.0011 12 6 -0.0803 -4.7978 0.0073 13 6 -0.7283 -3.5576 0.0010 14 6 -2.2094 -3.5053 0.0011 15 6 -2.9535 -4.6858 0.1071 16 6 -4.3117 -4.6505 0.1088 17 6 -4.9988 -3.4220 0.0040 18 7 -6.3222 -3.1799 -0.0129 19 6 -6.7071 -1.9638 -0.1180 20 16 -5.3816 -0.8938 -0.2165 21 6 -4.2532 -2.2410 -0.1021 22 6 -2.8633 -2.2839 -0.0986 23 7 -0.0345 -2.4313 0.0006 24 1 -0.4850 0.8400 0.0004 25 1 3.0893 -3.6556 0.0010 26 1 1.8260 -5.7897 0.0007 27 1 -0.6548 -5.7122 0.0125 28 1 -2.4430 -5.6342 0.1881 29 1 -4.8708 -5.5709 0.1910 30 1 -7.7414 -1.6538 -0.1422 31 1 -2.2935 -1.3697 -0.1759 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240342513.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:40 Heat of formation + Delta-G solvation = 88.877518 kcal Electronic energy + Delta-G solvation = -18276.201038 eV Core-core repulsion = 15420.783448 eV Total energy + Delta-G solvation = -2855.417590 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.052 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.03767 -38.37862 -36.38844 -33.71432 -31.44891 -30.81168 -30.31012 -28.46443 -25.81913 -24.75173 -22.86854 -21.94660 -21.09963 -20.23401 -18.22927 -17.40677 -16.20482 -15.93640 -15.23756 -14.88809 -14.47790 -14.35156 -14.11583 -13.44873 -13.27912 -13.14174 -12.64252 -12.41357 -12.17896 -11.51789 -11.45644 -11.17420 -11.12210 -10.84024 -10.63957 -10.41965 -10.02190 -9.85150 -9.51773 -9.46376 -8.79712 -8.19876 -7.91923 -7.75494 -7.22351 -6.53514 -4.63100 0.58487 1.52570 1.58855 1.99006 2.27482 2.78523 3.04057 3.05339 3.06768 3.16905 3.87320 4.11761 4.20235 4.71655 4.97803 5.13019 5.28506 5.62159 5.66017 5.80815 5.96784 6.01011 6.19926 6.30326 6.51062 6.57388 6.62891 6.68055 7.00181 7.01374 7.17539 7.22880 7.45501 7.60357 7.78050 7.90161 8.11097 8.54876 8.79617 9.90921 10.19458 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.016757 B = 0.005877 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.562891 B = 4763.303874 C = 6420.153202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.720 5.720 2 C 0.071 3.929 3 Si 0.909 3.091 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.429 4.429 8 H 0.085 0.915 9 C 0.256 3.744 10 C -0.267 4.267 11 C -0.060 4.060 12 C -0.296 4.296 13 C 0.171 3.829 14 C 0.004 3.996 15 C -0.093 4.093 16 C -0.075 4.075 17 C 0.061 3.939 18 N -0.465 5.465 19 C 0.046 3.954 20 S 0.085 5.915 21 C -0.174 4.174 22 C -0.038 4.038 23 N -0.467 5.467 24 H 0.273 0.727 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.137 0.863 29 H 0.130 0.870 30 H 0.197 0.803 31 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.211 -1.464 -0.241 8.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.341 5.341 2 C -0.154 4.154 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.460 4.460 8 H 0.103 0.897 9 C 0.131 3.869 10 C -0.290 4.290 11 C -0.083 4.083 12 C -0.320 4.320 13 C 0.027 3.973 14 C -0.001 4.001 15 C -0.114 4.114 16 C -0.096 4.096 17 C -0.059 4.059 18 N -0.177 5.177 19 C -0.258 4.258 20 S 0.338 5.662 21 C -0.292 4.292 22 C -0.061 4.061 23 N -0.180 5.180 24 H 0.084 0.916 25 H 0.119 0.881 26 H 0.117 0.883 27 H 0.118 0.882 28 H 0.155 0.845 29 H 0.148 0.852 30 H 0.214 0.786 31 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -9.212 0.190 -0.294 9.219 hybrid contribution 1.125 -0.935 0.073 1.465 sum -8.087 -0.746 -0.221 8.125 Atomic orbital electron populations 1.70052 1.07291 1.27855 1.28896 1.26035 0.94906 1.01114 0.93352 0.86306 0.80470 0.80682 0.79278 1.19368 1.20053 1.18535 1.19613 0.94330 0.89271 1.42777 0.89683 1.18503 0.87709 0.92092 0.88627 1.21831 0.98902 0.93535 1.14717 1.20798 0.93790 0.96783 0.96975 1.21205 0.94612 0.96681 1.19483 1.19590 0.90946 0.90343 0.96420 1.18798 0.92390 0.91899 0.97034 1.20875 0.92818 0.98734 0.99021 1.20127 0.93406 0.94839 1.01277 1.19236 0.86623 0.94365 1.05650 1.66139 1.15510 1.20885 1.15207 1.27923 1.04300 0.91056 1.02562 1.83949 0.97697 1.10665 1.73851 1.23785 0.99539 0.95479 1.10441 1.20967 0.89342 1.00564 0.95252 1.68720 1.07567 1.25069 1.16651 0.91576 0.88104 0.88268 0.88199 0.84524 0.85232 0.78592 0.81888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.03 11.15 55.55 0.62 -17.41 16 2 C 0.07 1.73 5.50 -17.35 -0.10 1.63 16 3 Si 0.91 17.94 29.56 -169.99 -5.02 12.91 16 4 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 7 C -0.43 -10.99 9.14 -37.73 -0.34 -11.33 16 8 H 0.09 2.04 7.85 -52.48 -0.41 1.63 16 9 C 0.26 6.73 6.55 -85.01 -0.56 6.18 16 10 C -0.27 -6.29 9.83 -38.63 -0.38 -6.67 16 11 C -0.06 -1.27 10.15 -39.40 -0.40 -1.67 16 12 C -0.30 -6.35 9.47 -38.77 -0.37 -6.72 16 13 C 0.17 4.01 6.73 -82.94 -0.56 3.46 16 14 C 0.00 0.08 5.87 -104.92 -0.62 -0.54 16 15 C -0.09 -1.60 9.32 -39.79 -0.37 -1.97 16 16 C -0.08 -1.22 10.03 -39.33 -0.39 -1.61 16 17 C 0.06 1.07 7.00 -84.88 -0.59 0.48 16 18 N -0.46 -7.51 10.56 -12.88 -0.14 -7.65 16 19 C 0.05 0.61 12.10 51.16 0.62 1.23 16 20 S 0.09 1.24 23.17 -107.50 -2.49 -1.25 16 21 C -0.17 -3.19 6.54 -38.59 -0.25 -3.44 16 22 C -0.04 -0.79 9.59 -39.03 -0.37 -1.16 16 23 N -0.47 -12.25 6.92 -7.69 -0.05 -12.30 16 24 H 0.27 6.22 8.29 -40.82 -0.34 5.89 16 25 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 26 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 27 H 0.10 1.82 6.19 -52.49 -0.32 1.50 16 28 H 0.14 2.03 6.17 -52.48 -0.32 1.70 16 29 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 30 H 0.20 1.69 8.06 -52.49 -0.42 1.26 16 31 H 0.16 3.71 7.22 -52.49 -0.38 3.33 16 LS Contribution 288.45 15.07 4.35 4.35 Total: -1.00 -28.57 288.45 -9.69 -38.26 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -2.26 Total: 5.25 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -4.69 Total: -22.16 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.43 Total: -37.35 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.02 Total: 12.91 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.49 Total: -1.25 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.57 -9.69 -38.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240342513.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.134 kcal (2) G-P(sol) polarization free energy of solvation -28.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds