Wall clock time and date at job start Tue Mar 31 2020 05:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30718 * 1 3 3 Si 1.86794 * 120.00103 * 2 1 4 4 H 1.48496 * 109.47028 * 239.99843 * 3 2 1 5 5 H 1.48503 * 109.47270 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47367 * 119.99840 * 3 2 1 7 7 C 1.40118 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00029 * 180.02562 * 7 2 1 9 9 C 1.40731 * 119.99933 * 359.97438 * 7 2 1 10 10 N 1.33721 * 119.94812 * 0.02562 * 9 7 2 11 11 C 1.31266 * 121.63575 * 179.97438 * 10 9 7 12 12 C 1.39096 * 121.36454 * 359.97438 * 11 10 9 13 13 C 1.38306 * 119.74108 * 0.30426 * 12 11 10 14 14 C 1.39793 * 118.47153 * 359.45304 * 13 12 11 15 15 C 1.47635 * 120.66083 * 180.24273 * 14 13 12 16 16 C 1.40263 * 120.13620 * 130.00108 * 15 14 13 17 17 C 1.35730 * 120.61180 * 179.74664 * 16 15 14 18 18 C 1.41292 * 120.64759 * 0.54763 * 17 16 15 19 19 N 1.34448 * 129.48513 * 179.77141 * 18 17 16 20 20 C 1.28045 * 117.91553 * 179.97438 * 19 18 17 21 21 S 1.70646 * 111.52728 * 359.97438 * 20 19 18 22 22 C 1.40180 * 118.75427 * 359.71576 * 18 17 16 23 23 C 1.38906 * 120.41070 * 0.02562 * 22 18 17 24 24 H 0.97000 * 119.99999 * 0.02562 * 1 2 3 25 25 H 1.08004 * 119.31779 * 179.97438 * 11 10 9 26 26 H 1.08002 * 120.12646 * 180.02562 * 12 11 10 27 27 H 1.08000 * 120.76522 * 179.70430 * 13 12 11 28 28 H 1.08008 * 119.68986 * 0.02562 * 16 15 14 29 29 H 1.08007 * 119.67773 * 180.26284 * 17 16 15 30 30 H 1.08001 * 124.23690 * 180.02562 * 20 19 18 31 31 H 1.08000 * 120.07774 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 3.0949 1.6963 -1.2125 5 1 1.2762 2.7465 -0.0006 6 1 3.0949 1.6964 1.2125 7 6 2.0077 -1.2135 0.0005 8 1 3.0877 -1.2135 0.0010 9 6 1.3040 -2.4322 0.0016 10 7 -0.0332 -2.4309 0.0016 11 6 -0.7228 -3.5479 0.0021 12 6 -0.0925 -4.7878 0.0022 13 6 1.2889 -4.8553 0.0080 14 6 2.0145 -3.6605 0.0021 15 6 3.4908 -3.6761 0.0025 16 6 4.2035 -2.9087 -0.9305 17 6 5.5608 -2.9119 -0.9354 18 6 6.2825 -3.6971 -0.0086 19 7 7.6113 -3.8365 0.1419 20 6 8.0313 -4.6163 1.0666 21 16 6.7372 -5.3228 1.9257 22 6 5.5706 -4.4683 0.9205 23 6 4.1815 -4.4580 0.9256 24 1 -0.4850 0.8400 -0.0004 25 1 -1.8019 -3.5032 0.0025 26 1 -0.6796 -5.6944 0.0022 27 1 1.7954 -5.8092 0.0129 28 1 3.6672 -2.3061 -1.6487 29 1 6.0944 -2.3120 -1.6578 30 1 9.0741 -4.8027 1.2771 31 1 3.6384 -5.0540 1.6441 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240344912.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:29 Heat of formation + Delta-G solvation = 87.427566 kcal Electronic energy + Delta-G solvation = -18446.242448 eV Core-core repulsion = 15590.761984 eV Total energy + Delta-G solvation = -2855.480464 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.052 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.96478 -38.40398 -36.31394 -33.86353 -31.65265 -30.76976 -30.29655 -28.16158 -26.00772 -24.48239 -22.93880 -21.63288 -21.37386 -20.24050 -18.07729 -17.63555 -16.30072 -15.61958 -15.52922 -14.90402 -14.48182 -14.42557 -14.20865 -13.49111 -13.31168 -13.04321 -12.51079 -12.28334 -12.11280 -11.71899 -11.50382 -11.27875 -11.18484 -11.03455 -10.53499 -10.44207 -10.04538 -9.77250 -9.54468 -9.44188 -8.65626 -8.14932 -7.88825 -7.76823 -7.34223 -6.61278 -4.70982 0.72203 1.54432 1.66410 1.98823 2.38468 2.72612 2.98860 3.01245 3.02209 3.11802 3.80375 4.18998 4.29050 4.56956 5.01920 5.35362 5.48509 5.65100 5.76925 5.81740 5.95104 6.01523 6.12885 6.32041 6.40927 6.50323 6.67161 6.71659 6.91783 7.01403 7.11784 7.22248 7.43313 7.57375 7.84073 7.87528 8.04322 8.43006 8.71340 9.89541 10.08339 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.016818 B = 0.006132 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.521471 B = 4564.952793 C = 5850.230595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.702 5.702 2 C 0.068 3.932 3 Si 0.905 3.095 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.415 4.415 8 H 0.094 0.906 9 C 0.270 3.730 10 N -0.480 5.480 11 C 0.138 3.862 12 C -0.320 4.320 13 C -0.025 4.025 14 C -0.249 4.249 15 C 0.064 3.936 16 C -0.094 4.094 17 C -0.065 4.065 18 C 0.041 3.959 19 N -0.456 5.456 20 C 0.040 3.960 21 S 0.059 5.941 22 C -0.154 4.154 23 C -0.102 4.102 24 H 0.277 0.723 25 H 0.121 0.879 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.142 0.858 29 H 0.128 0.872 30 H 0.195 0.805 31 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.169 -5.163 1.327 9.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.322 5.322 2 C -0.160 4.160 3 Si 0.728 3.272 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.444 4.444 8 H 0.112 0.888 9 C 0.147 3.853 10 N -0.191 5.191 11 C -0.032 4.032 12 C -0.343 4.343 13 C -0.050 4.050 14 C -0.254 4.254 15 C 0.059 3.941 16 C -0.114 4.114 17 C -0.086 4.086 18 C -0.077 4.077 19 N -0.168 5.168 20 C -0.265 4.265 21 S 0.311 5.689 22 C -0.272 4.272 23 C -0.126 4.126 24 H 0.089 0.911 25 H 0.138 0.862 26 H 0.115 0.885 27 H 0.116 0.884 28 H 0.160 0.840 29 H 0.146 0.854 30 H 0.212 0.788 31 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.041 -4.565 1.817 9.423 hybrid contribution 0.436 0.291 -0.471 0.705 sum 8.477 -4.275 1.345 9.589 Atomic orbital electron populations 1.70101 1.07334 1.28484 1.26281 1.26161 0.94938 1.01386 0.93519 0.86398 0.80260 0.80126 0.80399 1.18476 1.19933 1.18637 1.19816 0.94997 0.89331 1.40293 0.88797 1.18490 0.87993 0.90749 0.88079 1.68791 1.06947 1.26607 1.16781 1.22666 0.98944 0.88810 0.92743 1.21235 0.94527 0.97987 1.20553 1.20912 0.93833 0.95629 0.94611 1.19242 0.90047 0.94745 1.21413 1.18731 0.93065 0.91260 0.91025 1.21091 0.92668 0.98765 0.98863 1.20248 0.93385 0.97787 0.97211 1.19148 0.86577 1.02144 0.99861 1.66053 1.14587 1.17174 1.19016 1.27790 1.03978 0.98641 0.96072 1.83743 0.98419 1.48848 1.37922 1.23599 0.98987 1.03600 1.01056 1.20427 0.89458 1.02332 1.00365 0.91117 0.86157 0.88461 0.88381 0.83981 0.85421 0.78796 0.85789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.58 11.46 55.56 0.64 -16.94 16 2 C 0.07 1.61 5.50 -17.32 -0.10 1.52 16 3 Si 0.90 17.76 29.56 -169.99 -5.02 12.73 16 4 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 5 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 6 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.42 -10.29 7.96 -37.94 -0.30 -10.59 16 8 H 0.09 2.20 5.25 -52.49 -0.28 1.92 16 9 C 0.27 6.85 6.56 -84.70 -0.56 6.30 16 10 N -0.48 -12.46 7.85 -10.90 -0.09 -12.54 16 11 C 0.14 3.14 11.17 -17.47 -0.20 2.94 16 12 C -0.32 -6.71 10.10 -39.24 -0.40 -7.11 16 13 C -0.03 -0.53 9.65 -38.98 -0.38 -0.91 16 14 C -0.25 -5.67 5.53 -104.08 -0.58 -6.24 16 15 C 0.06 1.30 5.02 -104.91 -0.53 0.77 16 16 C -0.09 -1.79 7.47 -39.72 -0.30 -2.08 16 17 C -0.07 -1.15 10.03 -39.32 -0.39 -1.55 16 18 C 0.04 0.75 7.00 -84.83 -0.59 0.16 16 19 N -0.46 -7.63 10.56 -12.81 -0.14 -7.77 16 20 C 0.04 0.53 12.11 51.18 0.62 1.15 16 21 S 0.06 0.81 23.17 -107.50 -2.49 -1.68 16 22 C -0.15 -2.73 6.54 -38.61 -0.25 -2.98 16 23 C -0.10 -1.92 9.56 -38.94 -0.37 -2.29 16 24 H 0.28 6.30 8.29 -40.82 -0.34 5.96 16 25 H 0.12 2.41 8.06 -52.48 -0.42 1.98 16 26 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 27 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 28 H 0.14 2.70 7.25 -52.48 -0.38 2.32 16 29 H 0.13 1.97 8.06 -52.48 -0.42 1.55 16 30 H 0.20 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.12 2.19 8.04 -52.49 -0.42 1.77 16 LS Contribution 287.24 15.07 4.33 4.33 Total: -1.00 -28.03 287.24 -9.41 -37.44 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -2.33 Total: 5.34 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: -4.31 Total: -20.90 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.42 Total: -37.26 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.02 Total: 12.73 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.49 Total: -1.68 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.03 -9.41 -37.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240344912.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.870 kcal (2) G-P(sol) polarization free energy of solvation -28.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds