Wall clock time and date at job start Tue Mar 31 2020 05:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86806 * 119.99628 * 2 1 4 4 H 1.48501 * 109.46916 * 239.99484 * 3 2 1 5 5 H 1.48501 * 109.47173 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47026 * 119.99818 * 3 2 1 7 7 C 1.40035 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00075 * 197.29492 * 7 2 1 9 9 C 1.41525 * 120.00405 * 17.29578 * 7 2 1 10 10 C 1.41155 * 120.98293 * 23.16905 * 9 7 2 11 11 C 1.37720 * 119.08133 * 180.02562 * 10 9 7 12 12 N 1.31933 * 121.15978 * 359.73691 * 11 10 9 13 13 C 1.32810 * 122.20094 * 0.54010 * 12 11 10 14 14 C 1.48322 * 119.61708 * 179.74918 * 13 12 11 15 15 C 1.39882 * 119.83090 * 179.70292 * 14 13 12 16 16 C 1.36345 * 120.10180 * 179.97438 * 15 14 13 17 17 C 1.39463 * 120.40713 * 0.02562 * 16 15 14 18 18 S 1.76146 * 131.55039 * 179.97438 * 17 16 15 19 19 C 1.70627 * 90.85107 * 180.02562 * 18 17 16 20 20 N 1.27904 * 111.55306 * 359.97438 * 19 18 17 21 21 C 1.34698 * 117.83785 * 359.76135 * 20 19 18 22 22 C 1.38385 * 119.82794 * 359.71550 * 14 13 12 23 23 C 1.38927 * 120.76541 * 359.46439 * 13 12 11 24 24 H 0.96996 * 119.99986 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.45807 * 359.97438 * 10 9 7 26 26 H 1.08001 * 119.42034 * 179.97438 * 11 10 9 27 27 H 1.07998 * 119.94289 * 359.97438 * 15 14 13 28 28 H 1.08004 * 119.79681 * 179.97438 * 16 15 14 29 29 H 1.07999 * 124.22407 * 180.02562 * 19 18 17 30 30 H 1.07996 * 119.96729 * 359.97438 * 22 14 13 31 31 H 1.08005 * 120.62016 * 180.28572 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0952 1.6965 -1.2125 5 1 1.2763 2.7465 -0.0006 6 1 3.0951 1.6966 1.2126 7 6 2.0076 -1.2127 0.0005 8 1 3.0511 -1.2337 0.2786 9 6 1.3481 -2.4109 -0.3633 10 6 0.1903 -2.3868 -1.1704 11 6 -0.4205 -3.5762 -1.5004 12 7 0.0608 -4.7304 -1.0800 13 6 1.1433 -4.8093 -0.3146 14 6 1.6316 -6.1374 0.1300 15 6 2.7749 -6.2260 0.9310 16 6 3.2283 -7.4439 1.3433 17 6 2.5589 -8.6094 0.9710 18 16 2.8780 -10.3046 1.3273 19 6 1.5148 -10.7789 0.4173 20 7 0.9094 -9.7693 -0.0830 21 6 1.4094 -8.5452 0.1741 22 6 0.9539 -7.2825 -0.2501 23 6 1.8271 -3.6625 0.0695 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2114 -1.4486 -1.5235 26 1 -1.3069 -3.5641 -2.1173 27 1 3.2992 -5.3282 1.2233 28 1 4.1118 -7.5067 1.9614 29 1 1.2017 -11.8035 0.2813 30 1 0.0717 -7.2070 -0.8685 31 1 2.7098 -3.7296 0.6882 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241866487.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:14 Heat of formation + Delta-G solvation = 78.369225 kcal Electronic energy + Delta-G solvation = -17862.025547 eV Core-core repulsion = 15006.152284 eV Total energy + Delta-G solvation = -2855.873263 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.052 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.20145 -38.50530 -36.57548 -34.24064 -31.63257 -30.96231 -30.10329 -28.18919 -26.09233 -24.92269 -23.14166 -22.31737 -20.95460 -20.25438 -18.41791 -17.45664 -16.28861 -15.95241 -15.48682 -14.95237 -14.62755 -14.45198 -14.14525 -13.78760 -13.54634 -13.20832 -12.79716 -12.59367 -12.26385 -11.73684 -11.60717 -11.43451 -11.23519 -11.02532 -10.77878 -10.39351 -10.00761 -9.95306 -9.60783 -9.50757 -8.76866 -8.18252 -8.12846 -8.11559 -7.25479 -6.95297 -4.70786 0.56029 1.17188 1.33458 1.76941 2.39492 2.66777 2.84728 2.96268 2.98261 3.16688 3.77178 4.00692 4.07720 4.58837 4.77702 4.97023 5.22176 5.30293 5.56368 5.59857 5.71643 5.93444 6.15650 6.29807 6.36595 6.51293 6.68525 6.77870 6.88567 6.99418 7.02051 7.23256 7.34295 7.67722 7.73093 7.96885 8.32655 8.61073 8.62339 9.43855 9.95999 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.039283 B = 0.003574 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.608846 B = 7832.884500 C = 8469.570943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.078 3.922 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.454 4.454 8 H 0.083 0.917 9 C 0.126 3.874 10 C -0.207 4.207 11 C 0.089 3.911 12 N -0.562 5.562 13 C 0.148 3.852 14 C 0.001 3.999 15 C -0.081 4.081 16 C -0.082 4.082 17 C -0.180 4.180 18 S 0.067 5.933 19 C 0.057 3.943 20 N -0.457 5.457 21 C 0.069 3.931 22 C -0.037 4.037 23 C -0.248 4.248 24 H 0.285 0.715 25 H 0.128 0.872 26 H 0.124 0.876 27 H 0.142 0.858 28 H 0.129 0.871 29 H 0.200 0.800 30 H 0.147 0.853 31 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.068 -11.456 2.498 12.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.142 4.142 3 Si 0.737 3.263 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.485 4.485 8 H 0.101 0.899 9 C 0.118 3.882 10 C -0.229 4.229 11 C -0.063 4.063 12 N -0.277 5.277 13 C 0.014 3.986 14 C -0.003 4.003 15 C -0.103 4.103 16 C -0.105 4.105 17 C -0.298 4.298 18 S 0.319 5.681 19 C -0.248 4.248 20 N -0.169 5.169 21 C -0.049 4.049 22 C -0.059 4.059 23 C -0.272 4.272 24 H 0.097 0.903 25 H 0.146 0.854 26 H 0.142 0.858 27 H 0.160 0.840 28 H 0.147 0.853 29 H 0.216 0.784 30 H 0.165 0.835 31 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.612 -12.784 2.451 13.809 hybrid contribution 0.307 2.294 -0.004 2.314 sum 4.919 -10.490 2.447 11.841 Atomic orbital electron populations 1.69751 1.07781 1.29919 1.33313 1.25987 0.94778 1.01665 0.91807 0.86274 0.80141 0.79656 0.80204 1.18598 1.20131 1.18769 1.19587 0.98101 0.90813 1.40024 0.89908 1.17754 0.90806 0.91972 0.87693 1.22309 1.00082 0.98301 1.02206 1.21962 0.98078 0.88296 0.97993 1.67254 1.14333 1.29315 1.16804 1.18955 0.93186 0.90084 0.96348 1.18627 0.93840 0.92208 0.95627 1.21099 0.95597 0.97459 0.96146 1.19896 0.99867 0.89632 1.01064 1.23777 1.01879 0.97463 1.06688 1.83753 1.31495 0.98497 1.54382 1.27959 0.95972 1.02276 0.98623 1.66178 1.30792 0.98027 1.21919 1.19191 0.93785 0.91948 0.99986 1.20845 0.99864 0.87196 0.97957 1.21841 1.04279 0.92775 1.08289 0.90345 0.85387 0.85823 0.84038 0.85312 0.78378 0.83527 0.87556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.04 10.90 55.55 0.61 -18.43 16 2 C 0.08 1.83 5.20 -17.34 -0.09 1.74 16 3 Si 0.91 17.46 29.59 -169.99 -5.03 12.42 16 4 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 5 H -0.28 -5.16 7.11 56.52 0.40 -4.76 16 6 H -0.26 -4.97 7.11 56.52 0.40 -4.56 16 7 C -0.45 -11.30 9.12 -37.66 -0.34 -11.65 16 8 H 0.08 1.95 7.91 -52.48 -0.41 1.53 16 9 C 0.13 3.19 5.61 -106.56 -0.60 2.59 16 10 C -0.21 -5.15 8.80 -38.66 -0.34 -5.49 16 11 C 0.09 2.08 11.15 -17.70 -0.20 1.88 16 12 N -0.56 -13.28 9.35 -9.95 -0.09 -13.37 16 13 C 0.15 3.35 6.72 -83.04 -0.56 2.80 16 14 C 0.00 0.01 5.86 -105.08 -0.62 -0.60 16 15 C -0.08 -1.33 9.35 -39.65 -0.37 -1.70 16 16 C -0.08 -1.18 10.00 -39.81 -0.40 -1.57 16 17 C -0.18 -2.73 6.56 -38.46 -0.25 -2.98 16 18 S 0.07 0.77 23.17 -107.50 -2.49 -1.72 16 19 C 0.06 0.68 12.10 51.13 0.62 1.30 16 20 N -0.46 -7.29 10.57 -12.99 -0.14 -7.43 16 21 C 0.07 1.20 6.99 -84.98 -0.59 0.60 16 22 C -0.04 -0.70 9.63 -38.57 -0.37 -1.07 16 23 C -0.25 -5.79 9.24 -38.35 -0.35 -6.15 16 24 H 0.29 6.29 8.29 -40.82 -0.34 5.96 16 25 H 0.13 3.23 6.16 -52.49 -0.32 2.90 16 26 H 0.12 2.53 8.06 -52.49 -0.42 2.11 16 27 H 0.14 2.11 6.14 -52.49 -0.32 1.79 16 28 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 29 H 0.20 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.15 2.90 7.48 -52.49 -0.39 2.51 16 31 H 0.11 2.22 6.15 -52.48 -0.32 1.89 16 LS Contribution 287.52 15.07 4.33 4.33 Total: -1.00 -28.17 287.52 -9.46 -37.63 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -2.18 Total: 6.87 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -4.46 Total: -20.30 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.38 Total: -39.23 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.42 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.49 Total: -1.72 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.17 -9.46 -37.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241866487.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.997 kcal (2) G-P(sol) polarization free energy of solvation -28.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds