Wall clock time and date at job start Tue Mar 31 2020 05:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30733 * 1 3 3 Si 1.86804 * 119.99494 * 2 1 4 4 H 1.48490 * 109.47295 * 275.26197 * 3 2 1 5 5 H 1.48499 * 109.47046 * 35.26468 * 3 2 1 6 6 H 1.48501 * 109.46758 * 155.26231 * 3 2 1 7 7 C 1.40066 * 120.00293 * 180.27861 * 2 1 3 8 8 H 1.07999 * 120.00118 * 173.24988 * 7 2 1 9 9 C 1.40941 * 120.00093 * 353.25974 * 7 2 1 10 10 C 1.40905 * 119.68013 * 186.16429 * 9 7 2 11 11 C 1.36637 * 119.26176 * 179.97438 * 10 9 7 12 12 C 1.40315 * 118.60623 * 359.97438 * 11 10 9 13 13 C 1.47891 * 120.34891 * 180.02562 * 12 11 10 14 14 C 1.40144 * 119.85861 * 359.73613 * 13 12 11 15 15 C 1.36242 * 120.08082 * 179.75193 * 14 13 12 16 16 C 1.39589 * 120.44044 * 0.48134 * 15 14 13 17 17 S 1.76149 * 131.52890 * 179.74794 * 16 15 14 18 18 C 1.70624 * 90.85933 * 180.02562 * 17 16 15 19 19 N 1.27886 * 111.57823 * 359.97438 * 18 17 16 20 20 C 1.34736 * 117.83385 * 0.02562 * 19 18 17 21 21 C 1.38734 * 119.85290 * 179.97438 * 13 12 11 22 22 C 1.40137 * 119.30067 * 0.02562 * 12 11 10 23 23 N 1.31185 * 120.68227 * 359.71427 * 22 12 11 24 24 H 0.96998 * 120.00360 * 359.71743 * 1 2 3 25 25 H 1.07998 * 120.37169 * 359.97229 * 10 9 7 26 26 H 1.07997 * 120.69844 * 179.97438 * 11 10 9 27 27 H 1.08001 * 119.95509 * 359.97304 * 14 13 12 28 28 H 1.07997 * 119.77742 * 180.29523 * 15 14 13 29 29 H 1.07999 * 124.21400 * 180.02562 * 18 17 16 30 30 H 1.08001 * 119.98147 * 0.03053 * 21 13 12 31 31 H 1.08001 * 119.65968 * 179.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 2.3775 2.1107 -1.3941 5 1 1.4986 2.6180 0.8083 6 1 3.5899 1.4108 0.5859 7 6 2.0077 -1.2130 -0.0059 8 1 3.0821 -1.2156 -0.1158 9 6 1.3104 -2.4301 0.1314 10 6 2.0290 -3.6357 0.2556 11 6 1.3443 -4.8106 0.3888 12 6 -0.0583 -4.7735 0.3977 13 6 -0.8379 -6.0221 0.5404 14 6 -0.1731 -7.2498 0.6618 15 6 -0.8867 -8.4023 0.7985 16 6 -2.2823 -8.3730 0.8088 17 16 -3.4763 -9.6592 0.9594 18 6 -4.7478 -8.5268 0.8486 19 7 -4.3053 -7.3343 0.7157 20 6 -2.9698 -7.1587 0.6841 21 6 -2.2244 -5.9735 0.5484 22 6 -0.7126 -3.5409 0.2701 23 7 -0.0274 -2.4287 0.1488 24 1 -0.4850 0.8400 0.0041 25 1 3.1089 -3.6312 0.2456 26 1 1.8717 -5.7482 0.4852 27 1 0.9064 -7.2819 0.6505 28 1 -0.3693 -9.3452 0.8964 29 1 -5.7958 -8.7848 0.8868 30 1 -2.7317 -5.0251 0.4501 31 1 -1.7920 -3.5056 0.2758 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241866617.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:19 Heat of formation + Delta-G solvation = 85.933972 kcal Electronic energy + Delta-G solvation = -17838.975962 eV Core-core repulsion = 14983.430731 eV Total energy + Delta-G solvation = -2855.545231 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.052 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.04853 -38.43097 -36.52910 -33.93431 -31.74386 -31.01243 -29.88402 -28.70815 -25.84365 -24.64778 -23.16332 -22.09220 -21.03927 -20.07246 -18.22011 -17.76919 -16.29807 -15.81620 -15.69001 -15.08468 -14.49685 -14.38838 -14.15560 -13.48266 -13.40573 -13.03472 -12.57543 -12.55844 -12.22239 -11.71457 -11.68529 -11.30500 -11.11919 -10.99567 -10.62492 -10.54711 -10.17246 -10.02165 -9.51855 -9.51373 -8.76578 -8.36781 -8.07612 -7.76566 -7.23880 -6.67885 -4.72318 0.67212 1.30684 1.46911 1.89602 2.45178 2.75402 2.94783 2.95475 2.98970 3.09511 3.74599 4.11960 4.18750 4.60519 4.88048 5.23315 5.32557 5.51523 5.66434 5.71905 5.80131 5.90094 6.10337 6.24724 6.40366 6.50676 6.55758 6.61287 6.85044 6.86614 7.04523 7.18837 7.43953 7.58983 7.77945 7.81037 7.96700 8.36433 8.65732 9.86707 10.02490 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.044322 B = 0.003438 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.586711 B = 8141.900699 C = 8759.383223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.694 5.694 2 C 0.061 3.939 3 Si 0.913 3.087 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.400 4.400 8 H 0.090 0.910 9 C 0.250 3.750 10 C -0.270 4.270 11 C -0.033 4.033 12 C -0.284 4.284 13 C 0.050 3.950 14 C -0.115 4.115 15 C -0.067 4.067 16 C -0.207 4.207 17 S 0.054 5.946 18 C 0.060 3.940 19 N -0.463 5.463 20 C 0.090 3.910 21 C -0.104 4.104 22 C 0.163 3.837 23 N -0.489 5.489 24 H 0.279 0.721 25 H 0.102 0.898 26 H 0.101 0.899 27 H 0.131 0.869 28 H 0.122 0.878 29 H 0.197 0.803 30 H 0.133 0.867 31 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.255 -11.547 1.355 12.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.313 5.313 2 C -0.167 4.167 3 Si 0.736 3.264 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.182 1.182 7 C -0.429 4.429 8 H 0.108 0.892 9 C 0.128 3.872 10 C -0.292 4.292 11 C -0.056 4.056 12 C -0.290 4.290 13 C 0.046 3.954 14 C -0.136 4.136 15 C -0.089 4.089 16 C -0.325 4.325 17 S 0.306 5.694 18 C -0.245 4.245 19 N -0.175 5.175 20 C -0.027 4.027 21 C -0.125 4.125 22 C -0.007 4.007 23 N -0.200 5.200 24 H 0.091 0.909 25 H 0.120 0.880 26 H 0.119 0.881 27 H 0.149 0.851 28 H 0.140 0.860 29 H 0.214 0.786 30 H 0.151 0.849 31 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.243 -11.150 1.336 12.005 hybrid contribution 1.053 0.536 0.025 1.182 sum -3.191 -10.614 1.362 11.166 Atomic orbital electron populations 1.70121 1.07452 1.28655 1.25079 1.26232 0.95050 1.01664 0.93764 0.86202 0.80613 0.80184 0.79366 1.19161 1.19722 1.18192 1.19846 0.95215 0.89735 1.38114 0.89204 1.18696 0.88562 0.91950 0.88028 1.21436 0.98986 0.93767 1.15027 1.20638 0.92878 0.96804 0.95240 1.18931 0.93148 0.92352 1.24550 1.18652 0.91531 0.93031 0.92207 1.20971 1.00094 0.91352 1.01163 1.19852 0.89914 0.98715 1.00465 1.23574 0.98896 0.95412 1.14640 1.83650 0.98461 1.12186 1.75149 1.27912 1.04242 0.90543 1.01817 1.66202 1.13730 1.22612 1.14998 1.19084 0.86600 0.93901 1.03151 1.20619 0.92403 0.95589 1.03920 1.22825 0.98790 0.87889 0.91211 1.68822 1.07278 1.26020 1.17896 0.90949 0.87957 0.88149 0.85108 0.86012 0.78601 0.84889 0.85801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -17.42 11.47 55.55 0.64 -16.78 16 2 C 0.06 1.45 5.49 -17.33 -0.10 1.36 16 3 Si 0.91 17.25 29.57 -169.99 -5.03 12.22 16 4 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 5 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 6 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 7 C -0.40 -9.98 9.11 -37.87 -0.35 -10.33 16 8 H 0.09 2.06 7.86 -52.49 -0.41 1.65 16 9 C 0.25 6.46 6.54 -84.98 -0.56 5.90 16 10 C -0.27 -6.19 9.76 -39.15 -0.38 -6.57 16 11 C -0.03 -0.68 9.46 -39.38 -0.37 -1.06 16 12 C -0.28 -6.10 5.92 -104.45 -0.62 -6.72 16 13 C 0.05 0.94 5.86 -105.05 -0.62 0.32 16 14 C -0.11 -1.86 9.37 -39.58 -0.37 -2.23 16 15 C -0.07 -0.99 9.99 -39.80 -0.40 -1.39 16 16 C -0.21 -3.28 6.56 -38.38 -0.25 -3.53 16 17 S 0.05 0.66 23.17 -107.50 -2.49 -1.83 16 18 C 0.06 0.76 12.10 51.12 0.62 1.38 16 19 N -0.46 -7.65 10.57 -13.00 -0.14 -7.79 16 20 C 0.09 1.60 6.99 -84.97 -0.59 1.01 16 21 C -0.10 -1.94 9.50 -38.48 -0.37 -2.30 16 22 C 0.16 3.83 10.59 -17.12 -0.18 3.65 16 23 N -0.49 -12.90 7.86 -10.84 -0.09 -12.98 16 24 H 0.28 6.29 8.29 -40.82 -0.34 5.95 16 25 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 26 H 0.10 1.76 6.27 -52.49 -0.33 1.43 16 27 H 0.13 1.87 6.22 -52.49 -0.33 1.55 16 28 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 29 H 0.20 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.13 2.46 6.16 -52.49 -0.32 2.14 16 31 H 0.12 2.66 6.18 -52.49 -0.32 2.34 16 LS Contribution 286.35 15.07 4.32 4.32 Total: -1.00 -28.58 286.35 -9.43 -38.02 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -2.12 Total: 5.33 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: -4.53 Total: -20.51 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.41 Total: -37.55 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.03 Total: 12.22 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -2.49 Total: -1.83 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.58 -9.43 -38.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241866617.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.950 kcal (2) G-P(sol) polarization free energy of solvation -28.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds