Wall clock time and date at job start Tue Mar 31 2020 05:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86801 * 120.00428 * 2 1 4 4 H 1.48492 * 109.47145 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.46587 * 120.00135 * 3 2 1 6 6 H 1.48494 * 109.47123 * 240.00101 * 3 2 1 7 7 C 1.40038 * 119.99744 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99874 * 2.41551 * 7 2 1 9 9 C 1.41426 * 120.00103 * 182.42101 * 7 2 1 10 10 C 1.40461 * 119.77421 * 187.04581 * 9 7 2 11 11 C 1.39336 * 118.83025 * 179.97438 * 10 9 7 12 12 C 1.48348 * 120.82505 * 180.02562 * 11 10 9 13 13 C 1.39877 * 119.82507 * 359.73203 * 12 11 10 14 14 C 1.36361 * 120.10254 * 179.75798 * 13 12 11 15 15 C 1.39467 * 120.39933 * 0.51731 * 14 13 12 16 16 S 1.76137 * 131.54784 * 179.71345 * 15 14 13 17 17 C 1.70631 * 90.84998 * 180.02562 * 16 15 14 18 18 N 1.27903 * 111.55418 * 0.02562 * 17 16 15 19 19 C 1.34700 * 117.83073 * 359.97438 * 18 17 16 20 20 C 1.38373 * 119.83056 * 180.02562 * 12 11 10 21 21 C 1.40063 * 118.35600 * 0.02562 * 11 10 9 22 22 C 1.38476 * 119.41841 * 359.97438 * 21 11 10 23 23 N 1.31494 * 121.15478 * 359.74163 * 22 21 11 24 24 H 0.96993 * 120.00186 * 174.83101 * 1 2 3 25 25 H 1.07991 * 120.58652 * 0.02562 * 10 9 7 26 26 H 1.07998 * 119.94710 * 0.02562 * 13 12 11 27 27 H 1.07996 * 119.80025 * 180.25448 * 14 13 12 28 28 H 1.08002 * 124.21896 * 179.97438 * 17 16 15 29 29 H 1.07999 * 119.96271 * 0.02562 * 20 12 11 30 30 H 1.07997 * 120.28808 * 179.97438 * 21 11 10 31 31 H 1.08007 * 119.42274 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 1.2767 2.7464 0.0006 5 1 3.0953 1.6961 1.2125 6 1 3.0952 1.6963 -1.2125 7 6 2.0075 -1.2128 -0.0005 8 1 1.4682 -2.1477 -0.0404 9 6 3.4209 -1.2135 0.0512 10 6 4.1238 -2.4202 -0.0988 11 6 5.5159 -2.3981 -0.0451 12 6 6.3025 -3.6464 -0.1986 13 6 5.6433 -4.8645 -0.3945 14 6 6.3609 -6.0147 -0.5413 15 6 7.7542 -5.9890 -0.4869 16 16 8.9527 -7.2718 -0.6294 17 6 10.2187 -6.1472 -0.4194 18 7 9.7708 -4.9594 -0.2626 19 6 8.4357 -4.7826 -0.2859 20 6 7.6843 -3.6008 -0.1413 21 6 6.1543 -1.1680 0.1575 22 6 5.3916 -0.0206 0.2967 23 7 4.0788 -0.0650 0.2370 24 1 -0.4850 -0.8366 -0.0757 25 1 3.5946 -3.3488 -0.2539 26 1 4.5644 -4.8933 -0.4339 27 1 5.8470 -6.9518 -0.6964 28 1 11.2672 -6.4061 -0.4182 29 1 8.1868 -2.6577 0.0153 30 1 7.2319 -1.1149 0.2048 31 1 5.8838 0.9279 0.4534 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241869400.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:26 Heat of formation + Delta-G solvation = 71.996296 kcal Electronic energy + Delta-G solvation = -17958.895007 eV Core-core repulsion = 15102.745393 eV Total energy + Delta-G solvation = -2856.149614 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.052 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.43324 -38.80877 -36.91928 -33.95533 -32.59322 -30.87022 -30.21541 -28.90070 -25.76874 -25.10941 -23.37735 -22.65729 -20.94365 -20.36510 -18.70560 -18.14865 -16.53558 -16.27091 -15.79809 -15.00294 -14.81964 -14.61733 -14.27839 -13.79577 -13.71747 -13.24104 -12.98493 -12.53521 -12.40456 -12.09722 -12.02487 -11.84876 -11.05976 -10.79480 -10.58749 -10.27874 -10.14029 -9.78474 -9.67766 -9.37736 -9.24898 -8.45742 -8.09207 -7.78196 -7.75693 -7.31930 -4.89055 0.36239 0.88755 1.15510 1.59584 2.18153 2.44822 2.65968 3.58787 3.60646 3.85861 3.87902 4.00066 4.40551 4.55845 4.59054 4.84739 5.04264 5.14712 5.31707 5.42405 5.47190 5.62937 5.77194 6.04319 6.10841 6.13656 6.25887 6.37242 6.57714 6.63957 6.85686 7.10056 7.26895 7.36578 7.47124 7.52735 7.96753 8.16737 8.52392 9.36639 9.92403 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.042173 B = 0.003780 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.769195 B = 7406.115605 C = 8049.933668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.043 3.957 3 Si 1.155 2.845 4 H -0.332 1.332 5 H -0.279 1.279 6 H -0.293 1.293 7 C -0.470 4.470 8 H 0.082 0.918 9 C 0.248 3.752 10 C -0.237 4.237 11 C 0.010 3.990 12 C -0.009 4.009 13 C -0.084 4.084 14 C -0.076 4.076 15 C -0.182 4.182 16 S 0.077 5.923 17 C 0.060 3.940 18 N -0.460 5.460 19 C 0.075 3.925 20 C -0.056 4.056 21 C -0.303 4.303 22 C 0.155 3.845 23 N -0.573 5.573 24 H 0.283 0.717 25 H 0.110 0.890 26 H 0.141 0.859 27 H 0.130 0.870 28 H 0.201 0.799 29 H 0.141 0.859 30 H 0.109 0.891 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.241 -12.061 -1.246 18.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.179 4.179 3 Si 0.990 3.010 4 H -0.266 1.266 5 H -0.207 1.207 6 H -0.221 1.221 7 C -0.501 4.501 8 H 0.100 0.900 9 C 0.126 3.874 10 C -0.259 4.259 11 C 0.005 3.995 12 C -0.012 4.012 13 C -0.105 4.105 14 C -0.099 4.099 15 C -0.300 4.300 16 S 0.329 5.671 17 C -0.245 4.245 18 N -0.172 5.172 19 C -0.043 4.043 20 C -0.077 4.077 21 C -0.326 4.326 22 C -0.006 4.006 23 N -0.292 5.292 24 H 0.095 0.905 25 H 0.128 0.872 26 H 0.159 0.841 27 H 0.148 0.852 28 H 0.218 0.782 29 H 0.158 0.842 30 H 0.126 0.874 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 13.869 -10.455 -1.172 17.408 hybrid contribution 0.342 -2.033 -0.067 2.062 sum 14.211 -12.487 -1.240 18.958 Atomic orbital electron populations 1.70653 1.08212 1.32864 1.30442 1.27871 0.95269 1.06351 0.88393 0.81797 0.70542 0.69250 0.79386 1.26595 1.20667 1.22068 1.20820 0.90304 0.96375 1.42625 0.89961 1.18583 0.93976 0.86795 0.88050 1.21742 0.92293 0.98899 1.12984 1.18579 0.92813 0.90836 0.97318 1.18804 0.91963 0.93477 0.96942 1.21122 1.00892 0.91044 0.97438 1.19964 0.89842 0.99147 1.00920 1.23805 0.99263 0.96062 1.10870 1.83841 0.97858 1.11976 1.73385 1.28007 1.04572 0.90552 1.01367 1.66198 1.13104 1.22610 1.15334 1.19112 0.87038 0.93933 1.04266 1.20764 0.92263 0.96019 0.98690 1.21199 0.98880 0.92940 1.19603 1.22053 0.89722 0.96761 0.92066 1.66522 1.09302 1.28223 1.25105 0.90533 0.87196 0.84099 0.85179 0.78195 0.84174 0.87351 0.85139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.41 13.65 55.55 0.76 -20.65 16 2 C 0.04 1.14 5.52 -17.34 -0.10 1.04 16 3 Si 1.16 27.97 25.54 -169.99 -4.34 23.62 16 4 H -0.33 -7.97 7.11 56.52 0.40 -7.57 16 5 H -0.28 -6.71 6.68 56.52 0.38 -6.33 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 7 C -0.47 -12.41 9.58 -37.69 -0.36 -12.77 16 8 H 0.08 2.14 8.05 -52.48 -0.42 1.72 16 9 C 0.25 6.26 6.40 -85.02 -0.54 5.71 16 10 C -0.24 -5.24 9.22 -38.34 -0.35 -5.59 16 11 C 0.01 0.21 5.90 -104.64 -0.62 -0.41 16 12 C -0.01 -0.15 5.86 -105.07 -0.62 -0.77 16 13 C -0.08 -1.25 9.38 -39.64 -0.37 -1.62 16 14 C -0.08 -1.00 10.00 -39.80 -0.40 -1.40 16 15 C -0.18 -2.50 6.56 -38.46 -0.25 -2.75 16 16 S 0.08 0.79 23.17 -107.50 -2.49 -1.70 16 17 C 0.06 0.63 12.10 51.13 0.62 1.25 16 18 N -0.46 -6.53 10.57 -12.99 -0.14 -6.67 16 19 C 0.08 1.16 6.99 -84.98 -0.59 0.56 16 20 C -0.06 -0.91 9.51 -38.57 -0.37 -1.28 16 21 C -0.30 -5.98 9.50 -38.81 -0.37 -6.35 16 22 C 0.15 3.29 11.17 -17.61 -0.20 3.09 16 23 N -0.57 -14.15 4.53 -11.21 -0.05 -14.20 16 24 H 0.28 7.21 8.72 -40.82 -0.36 6.85 16 25 H 0.11 2.21 6.30 -52.49 -0.33 1.88 16 26 H 0.14 1.97 6.26 -52.49 -0.33 1.64 16 27 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 28 H 0.20 1.22 8.06 -52.49 -0.42 0.80 16 29 H 0.14 2.17 6.22 -52.49 -0.33 1.84 16 30 H 0.11 1.84 6.29 -52.49 -0.33 1.51 16 31 H 0.13 2.34 8.06 -52.48 -0.42 1.92 16 LS Contribution 282.05 15.07 4.25 4.25 Total: -1.00 -29.43 282.05 -8.71 -38.14 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: -2.18 Total: -1.51 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: -4.52 Total: -21.29 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 0.57 Total: -41.52 kcal Atomic # 14 Polarization: 27.97 SS G_CDS: -4.34 Total: 23.62 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.49 Total: -1.70 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.43 -8.71 -38.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241869400.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.135 kcal (2) G-P(sol) polarization free energy of solvation -29.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds