Wall clock time and date at job start Tue Mar 31 2020 05:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30717 * 1 3 3 Si 1.86796 * 119.99529 * 2 1 4 4 H 1.48502 * 109.47384 * 274.98133 * 3 2 1 5 5 H 1.48498 * 109.47227 * 34.98465 * 3 2 1 6 6 H 1.48506 * 109.46711 * 154.98547 * 3 2 1 7 7 C 1.40120 * 119.99886 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99679 * 186.04300 * 7 2 1 9 9 C 1.40762 * 120.00395 * 6.03958 * 7 2 1 10 10 N 1.33709 * 119.94441 * 351.40933 * 9 7 2 11 11 C 1.31270 * 121.63955 * 180.02562 * 10 9 7 12 12 C 1.39082 * 121.34941 * 359.97438 * 11 10 9 13 13 C 1.38347 * 119.73379 * 0.27134 * 12 11 10 14 14 C 1.39732 * 118.47109 * 359.49275 * 13 12 11 15 15 C 1.47744 * 120.65363 * 180.26150 * 14 13 12 16 16 C 1.40209 * 119.86753 * 130.24940 * 15 14 13 17 17 C 1.36212 * 120.07576 * 180.02562 * 16 15 14 18 18 C 1.39606 * 120.45013 * 359.97438 * 17 16 15 19 19 S 1.76149 * 131.52094 * 180.02562 * 18 17 16 20 20 C 1.70619 * 90.86065 * 180.02562 * 19 18 17 21 21 N 1.27876 * 111.58443 * 359.97438 * 20 19 18 22 22 C 1.34742 * 117.83555 * 0.02562 * 21 20 19 23 23 C 1.38810 * 119.85690 * 309.97741 * 15 14 13 24 24 H 0.96995 * 119.99887 * 359.97438 * 1 2 3 25 25 H 1.08001 * 119.32602 * 179.97438 * 11 10 9 26 26 H 1.08001 * 120.13167 * 180.02562 * 12 11 10 27 27 H 1.07998 * 120.76444 * 179.72760 * 13 12 11 28 28 H 1.08005 * 119.95579 * 359.97403 * 16 15 14 29 29 H 1.08002 * 119.77633 * 179.97438 * 17 16 15 30 30 H 1.08004 * 124.21341 * 179.97438 * 20 19 18 31 31 H 1.07996 * 119.98543 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 2.3832 2.1073 -1.3948 5 1 1.4951 2.6200 0.8027 6 1 3.5873 1.4121 0.5921 7 6 2.0077 -1.2135 -0.0005 8 1 3.0833 -1.2161 0.0979 9 6 1.3099 -2.4291 -0.1293 10 7 -0.0262 -2.4403 -0.0783 11 6 -0.7104 -3.5546 -0.1941 12 6 -0.0750 -4.7783 -0.3763 13 6 1.3063 -4.8326 -0.4323 14 6 2.0251 -3.6403 -0.3131 15 6 3.5014 -3.6417 -0.3719 16 6 4.1671 -2.7487 -1.2236 17 6 5.5280 -2.7467 -1.2815 18 6 6.2709 -3.6300 -0.4961 19 16 8.0082 -3.8757 -0.3400 20 6 7.7562 -5.1109 0.8097 21 7 6.5113 -5.2982 1.0338 22 6 5.6290 -4.5321 0.3627 23 6 4.2237 -4.5233 0.4205 24 1 -0.4850 0.8400 0.0004 25 1 -1.7889 -3.5205 -0.1470 26 1 -0.6574 -5.6830 -0.4697 27 1 1.8171 -5.7743 -0.5688 28 1 3.6001 -2.0622 -1.8349 29 1 6.0358 -2.0571 -1.9395 30 1 8.5495 -5.6656 1.2888 31 1 3.7063 -5.2057 1.0783 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241869435.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:28 Heat of formation + Delta-G solvation = 87.190009 kcal Electronic energy + Delta-G solvation = -18455.684798 eV Core-core repulsion = 15600.194033 eV Total energy + Delta-G solvation = -2855.490765 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.052 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.98038 -38.37160 -36.35439 -33.82392 -31.99036 -30.47291 -29.96705 -28.32179 -25.93452 -24.56640 -23.16342 -21.67502 -21.30800 -19.95566 -18.12511 -17.60915 -16.23651 -15.77378 -15.42068 -14.94074 -14.48451 -14.42913 -14.21664 -13.53742 -13.39943 -13.03803 -12.61070 -12.27388 -11.88466 -11.57952 -11.46860 -11.30860 -11.17221 -11.09093 -10.61995 -10.44962 -10.04032 -9.72825 -9.50884 -9.46161 -8.58694 -8.14082 -7.91432 -7.74268 -7.35094 -6.59772 -4.68115 0.77635 1.49548 1.52579 1.95499 2.55609 2.72738 2.93697 3.00054 3.03816 3.11068 3.81656 4.17748 4.27061 4.58803 4.99399 5.30262 5.54814 5.61023 5.75489 5.82350 5.96799 5.99476 6.21352 6.35384 6.40209 6.51887 6.66679 6.72888 6.94327 7.04290 7.11514 7.24806 7.46284 7.60884 7.84043 7.88073 8.07894 8.46450 8.74605 9.92377 10.11525 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.016828 B = 0.006135 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.470058 B = 4562.626277 C = 5943.142448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.706 5.706 2 C 0.069 3.931 3 Si 0.903 3.097 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.419 4.419 8 H 0.092 0.908 9 C 0.271 3.729 10 N -0.481 5.481 11 C 0.136 3.864 12 C -0.319 4.319 13 C -0.028 4.028 14 C -0.245 4.245 15 C 0.045 3.955 16 C -0.073 4.073 17 C -0.085 4.085 18 C -0.188 4.188 19 S 0.057 5.943 20 C 0.054 3.946 21 N -0.461 5.461 22 C 0.075 3.925 23 C -0.083 4.083 24 H 0.276 0.724 25 H 0.121 0.879 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.143 0.857 29 H 0.124 0.876 30 H 0.197 0.803 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.206 -3.242 -1.726 10.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.325 5.325 2 C -0.158 4.158 3 Si 0.727 3.273 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.449 4.449 8 H 0.110 0.890 9 C 0.148 3.852 10 N -0.192 5.192 11 C -0.033 4.033 12 C -0.342 4.342 13 C -0.052 4.052 14 C -0.250 4.250 15 C 0.041 3.959 16 C -0.095 4.095 17 C -0.108 4.108 18 C -0.306 4.306 19 S 0.308 5.692 20 C -0.252 4.252 21 N -0.173 5.173 22 C -0.043 4.043 23 C -0.105 4.105 24 H 0.087 0.913 25 H 0.138 0.862 26 H 0.115 0.885 27 H 0.116 0.884 28 H 0.160 0.840 29 H 0.142 0.858 30 H 0.213 0.787 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.388 -2.287 -1.588 10.754 hybrid contribution -0.065 -0.290 0.072 0.306 sum 10.322 -2.576 -1.515 10.746 Atomic orbital electron populations 1.70109 1.07326 1.28281 1.26826 1.26142 0.94898 1.01308 0.93494 0.86352 0.80843 0.80743 0.79396 1.19132 1.19841 1.18164 1.19758 0.95203 0.89411 1.40508 0.88970 1.18503 0.87928 0.90725 0.88045 1.68775 1.07219 1.26163 1.17090 1.22650 0.98904 0.88916 0.92815 1.21246 0.94558 0.98358 1.19996 1.20924 0.93881 0.95547 0.94851 1.19256 0.90127 0.95199 1.20387 1.18556 0.93188 0.92100 0.92030 1.21258 0.92784 0.97872 0.97543 1.19935 0.93658 0.98050 0.99110 1.23678 0.95317 1.05170 1.06396 1.83666 1.04280 1.37615 1.43622 1.27854 0.96447 1.00458 1.00419 1.66178 1.01479 1.25396 1.24294 1.19081 0.94688 0.94471 0.96042 1.20774 0.88806 1.00797 1.00095 0.91250 0.86193 0.88478 0.88351 0.83954 0.85812 0.78680 0.85404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.77 11.50 55.56 0.64 -17.13 16 2 C 0.07 1.65 5.49 -17.32 -0.10 1.55 16 3 Si 0.90 17.68 29.56 -169.99 -5.03 12.66 16 4 H -0.27 -5.10 7.11 56.52 0.40 -4.69 16 5 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 6 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 7 C -0.42 -10.44 7.72 -37.92 -0.29 -10.73 16 8 H 0.09 2.19 5.62 -52.48 -0.30 1.89 16 9 C 0.27 6.95 6.54 -84.71 -0.55 6.40 16 10 N -0.48 -12.62 7.90 -10.91 -0.09 -12.70 16 11 C 0.14 3.14 11.17 -17.48 -0.20 2.94 16 12 C -0.32 -6.80 10.10 -39.23 -0.40 -7.19 16 13 C -0.03 -0.59 9.64 -38.98 -0.38 -0.97 16 14 C -0.24 -5.64 5.52 -104.07 -0.57 -6.21 16 15 C 0.04 0.92 4.97 -105.06 -0.52 0.40 16 16 C -0.07 -1.38 7.57 -39.57 -0.30 -1.68 16 17 C -0.08 -1.42 9.99 -39.80 -0.40 -1.82 16 18 C -0.19 -3.19 6.57 -38.37 -0.25 -3.44 16 19 S 0.06 0.74 23.17 -107.50 -2.49 -1.75 16 20 C 0.05 0.71 12.10 51.12 0.62 1.33 16 21 N -0.46 -7.87 10.57 -13.00 -0.14 -8.01 16 22 C 0.07 1.39 6.99 -84.97 -0.59 0.80 16 23 C -0.08 -1.63 9.59 -38.46 -0.37 -2.00 16 24 H 0.28 6.29 8.29 -40.82 -0.34 5.95 16 25 H 0.12 2.44 8.06 -52.49 -0.42 2.01 16 26 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 27 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 28 H 0.14 2.68 7.29 -52.48 -0.38 2.30 16 29 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 30 H 0.20 1.70 8.06 -52.48 -0.42 1.28 16 31 H 0.13 2.45 8.03 -52.49 -0.42 2.03 16 LS Contribution 287.48 15.07 4.33 4.33 Total: -1.00 -28.43 287.48 -9.41 -37.85 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -2.35 Total: 5.39 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -4.30 Total: -20.63 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.42 Total: -37.85 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.66 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.49 Total: -1.75 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.43 -9.41 -37.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241869435.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.036 kcal (2) G-P(sol) polarization free energy of solvation -28.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds