Wall clock time and date at job start Tue Mar 31 2020 05:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30709 * 1 3 3 Si 1.86800 * 119.99952 * 2 1 4 4 H 1.48497 * 109.47117 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46991 * 299.99680 * 3 2 1 6 6 H 1.48504 * 109.46970 * 59.99400 * 3 2 1 7 7 C 1.40154 * 119.99743 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99266 * 164.34750 * 7 2 1 9 9 C 1.40880 * 120.00075 * 344.34360 * 7 2 1 10 10 C 1.41130 * 121.11528 * 334.57678 * 9 7 2 11 11 C 1.36445 * 119.11394 * 179.97438 * 10 9 7 12 12 N 1.32235 * 121.52121 * 359.97438 * 11 10 9 13 13 C 1.31641 * 122.51195 * 0.02562 * 12 11 10 14 14 C 1.39365 * 120.65375 * 0.02562 * 13 12 11 15 15 C 1.47771 * 120.79255 * 180.02562 * 14 13 12 16 16 C 1.40195 * 119.86406 * 129.95634 * 15 14 13 17 17 C 1.36229 * 120.07592 * 180.02562 * 16 15 14 18 18 C 1.39599 * 120.44877 * 359.97332 * 17 16 15 19 19 S 1.76152 * 131.52234 * 179.97438 * 18 17 16 20 20 C 1.70629 * 90.85661 * 180.02562 * 19 18 17 21 21 N 1.27873 * 111.58078 * 359.97438 * 20 19 18 22 22 C 1.34734 * 117.83725 * 0.02562 * 21 20 19 23 23 C 1.38782 * 119.86114 * 309.68519 * 15 14 13 24 24 H 0.96998 * 120.00112 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.44494 * 0.02562 * 10 9 7 26 26 H 1.08000 * 119.24014 * 180.02562 * 11 10 9 27 27 H 1.08000 * 119.67913 * 179.97438 * 13 12 11 28 28 H 1.08001 * 119.95988 * 0.02562 * 16 15 14 29 29 H 1.07994 * 119.77457 * 179.97438 * 17 16 15 30 30 H 1.07998 * 124.20377 * 179.97438 * 20 19 18 31 31 H 1.08001 * 119.97838 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2411 1.6177 0.0000 4 1 3.7010 1.3464 0.0006 5 1 1.8824 2.3964 -1.2125 6 1 1.8822 2.3965 1.2125 7 6 2.0078 -1.2138 0.0005 8 1 3.0578 -1.2312 -0.2518 9 6 1.3426 -2.4110 0.3303 10 6 0.1919 -2.4048 1.1475 11 6 -0.4205 -3.5883 1.4408 12 7 0.0391 -4.7381 0.9768 13 6 1.1064 -4.8159 0.2102 14 6 1.8083 -3.6668 -0.1493 15 6 3.0064 -3.7505 -1.0102 16 6 3.1160 -2.9229 -2.1365 17 6 4.2184 -2.9968 -2.9334 18 6 5.2465 -3.8935 -2.6373 19 16 6.7733 -4.2290 -3.4492 20 6 7.1640 -5.4105 -2.2818 21 7 6.2452 -5.5216 -1.3993 22 6 5.1610 -4.7304 -1.5169 23 6 4.0212 -4.6440 -0.6971 24 1 -0.4850 0.8400 -0.0004 25 1 -0.1992 -1.4756 1.5348 26 1 -1.3014 -3.5858 2.0656 27 1 1.4421 -5.7797 -0.1430 28 1 2.3254 -2.2260 -2.3727 29 1 4.2975 -2.3573 -3.8000 30 1 8.0740 -5.9920 -2.2875 31 1 3.9340 -5.2758 0.1744 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241869754.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:30 Heat of formation + Delta-G solvation = 75.436633 kcal Electronic energy + Delta-G solvation = -18439.127472 eV Core-core repulsion = 15583.127042 eV Total energy + Delta-G solvation = -2856.000430 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.052 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.98284 -38.50500 -36.39301 -34.33548 -31.95796 -30.57848 -29.73469 -28.24042 -26.19228 -24.59018 -23.11192 -21.76842 -21.36803 -19.94917 -18.14869 -17.68032 -16.18724 -15.77589 -15.52698 -14.82583 -14.62284 -14.51628 -14.29185 -13.57446 -13.37378 -13.04445 -12.78487 -12.36288 -12.13780 -11.60531 -11.55324 -11.46438 -11.35603 -11.03444 -10.63811 -10.42353 -9.98021 -9.80269 -9.58335 -9.46613 -8.52546 -8.16884 -8.04296 -7.86967 -7.40442 -7.02884 -4.77920 0.78001 1.48001 1.52241 1.95317 2.53285 2.65500 2.83957 2.92254 2.97873 3.11262 3.70564 4.17540 4.26195 4.46609 4.99131 5.30295 5.44906 5.56411 5.67224 5.73846 5.83719 6.04737 6.24013 6.35675 6.50399 6.64183 6.71907 6.78195 6.90097 7.12167 7.17932 7.22689 7.37318 7.68171 7.83924 7.92114 8.26315 8.51401 8.55169 9.48777 9.83421 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.016643 B = 0.006082 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.951932 B = 4602.841755 C = 5958.386643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.078 3.922 3 Si 0.908 3.092 4 H -0.256 1.256 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.441 4.441 8 H 0.088 0.912 9 C 0.148 3.852 10 C -0.206 4.206 11 C 0.084 3.916 12 N -0.577 5.577 13 C 0.136 3.864 14 C -0.243 4.243 15 C 0.043 3.957 16 C -0.066 4.066 17 C -0.087 4.087 18 C -0.185 4.185 19 S 0.056 5.944 20 C 0.053 3.947 21 N -0.460 5.460 22 C 0.073 3.927 23 C -0.081 4.081 24 H 0.287 0.713 25 H 0.127 0.873 26 H 0.120 0.880 27 H 0.123 0.877 28 H 0.143 0.857 29 H 0.123 0.877 30 H 0.197 0.803 31 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.602 -1.489 -5.522 10.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.180 1.180 5 H -0.195 1.195 6 H -0.193 1.193 7 C -0.470 4.470 8 H 0.106 0.894 9 C 0.140 3.860 10 C -0.228 4.228 11 C -0.063 4.063 12 N -0.291 5.291 13 C -0.023 4.023 14 C -0.249 4.249 15 C 0.039 3.961 16 C -0.087 4.087 17 C -0.109 4.109 18 C -0.303 4.303 19 S 0.308 5.692 20 C -0.252 4.252 21 N -0.173 5.173 22 C -0.044 4.044 23 C -0.103 4.103 24 H 0.098 0.902 25 H 0.144 0.856 26 H 0.137 0.863 27 H 0.141 0.859 28 H 0.161 0.839 29 H 0.141 0.859 30 H 0.213 0.787 31 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.531 -2.159 -5.682 10.475 hybrid contribution 0.173 1.606 0.324 1.647 sum 8.704 -0.553 -5.358 10.236 Atomic orbital electron populations 1.69748 1.07804 1.30013 1.32265 1.26041 0.94766 1.01726 0.91804 0.86227 0.81243 0.80357 0.78994 1.17982 1.19547 1.19335 1.19660 0.97766 0.90460 1.39152 0.89415 1.17713 0.90096 0.91061 0.87114 1.21910 1.00036 0.98338 1.02547 1.21751 0.98062 0.88816 0.97715 1.67337 1.15997 1.29042 1.16708 1.22134 0.91169 0.95755 0.93245 1.19432 1.01035 0.95306 1.09133 1.18520 0.92512 0.92248 0.92801 1.21259 0.96994 0.97686 0.92788 1.19944 0.92485 0.97893 1.00615 1.23694 0.99981 1.05553 1.01082 1.83684 1.14574 1.39038 1.31926 1.27852 1.02060 1.01150 0.94139 1.66172 1.01305 1.23608 1.26181 1.19075 0.94505 0.94967 0.95892 1.20795 0.90286 1.00437 0.98770 0.90227 0.85559 0.86291 0.85942 0.83943 0.85868 0.78679 0.85268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.92 10.95 55.56 0.61 -17.31 16 2 C 0.08 1.75 5.21 -17.31 -0.09 1.66 16 3 Si 0.91 17.02 29.59 -169.99 -5.03 11.99 16 4 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 5 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 6 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 7 C -0.44 -10.41 7.27 -37.86 -0.28 -10.68 16 8 H 0.09 2.05 6.70 -52.48 -0.35 1.70 16 9 C 0.15 3.60 5.59 -106.26 -0.59 3.01 16 10 C -0.21 -4.99 8.72 -39.13 -0.34 -5.33 16 11 C 0.08 1.93 11.09 -18.02 -0.20 1.73 16 12 N -0.58 -13.54 10.32 -13.36 -0.14 -13.68 16 13 C 0.14 3.04 10.69 -17.21 -0.18 2.86 16 14 C -0.24 -5.52 5.52 -104.04 -0.57 -6.09 16 15 C 0.04 0.87 4.99 -105.06 -0.52 0.34 16 16 C -0.07 -1.24 7.99 -39.57 -0.32 -1.56 16 17 C -0.09 -1.44 9.99 -39.80 -0.40 -1.84 16 18 C -0.19 -3.12 6.56 -38.37 -0.25 -3.37 16 19 S 0.06 0.73 23.17 -107.50 -2.49 -1.76 16 20 C 0.05 0.70 12.10 51.11 0.62 1.32 16 21 N -0.46 -7.77 10.57 -13.01 -0.14 -7.90 16 22 C 0.07 1.35 6.99 -84.98 -0.59 0.75 16 23 C -0.08 -1.57 9.59 -38.47 -0.37 -1.93 16 24 H 0.29 5.99 8.29 -40.82 -0.34 5.65 16 25 H 0.13 3.09 6.27 -52.49 -0.33 2.76 16 26 H 0.12 2.42 8.06 -52.49 -0.42 1.99 16 27 H 0.12 2.44 8.05 -52.49 -0.42 2.02 16 28 H 0.14 2.75 7.34 -52.49 -0.39 2.36 16 29 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 30 H 0.20 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.13 2.42 8.04 -52.49 -0.42 1.99 16 LS Contribution 287.06 15.07 4.33 4.33 Total: -1.00 -26.79 287.06 -9.27 -36.06 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -2.31 Total: 7.41 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -4.09 Total: -19.14 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.33 Total: -38.89 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -5.03 Total: 11.99 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -2.49 Total: -1.76 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -26.79 -9.27 -36.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241869754.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.497 kcal (2) G-P(sol) polarization free energy of solvation -26.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds