Wall clock time and date at job start Tue Mar 31 2020 05:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30785 * 1 3 3 Si 1.86804 * 120.00126 * 2 1 4 4 H 1.48504 * 109.46898 * 269.99843 * 3 2 1 5 5 H 1.48497 * 109.47030 * 30.00023 * 3 2 1 6 6 H 1.48495 * 109.46925 * 150.00106 * 3 2 1 7 7 C 1.40068 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00074 * 168.32571 * 7 2 1 9 9 C 1.40785 * 119.99981 * 348.32258 * 7 2 1 10 10 C 1.40356 * 120.41676 * 330.70274 * 9 7 2 11 11 C 1.40019 * 117.99058 * 180.26308 * 10 9 7 12 12 C 1.40788 * 121.38838 * 179.69419 * 11 10 9 13 13 C 1.36114 * 119.47440 * 180.02562 * 12 11 10 14 14 C 1.39171 * 121.46662 * 0.02562 * 13 12 11 15 15 C 1.36238 * 121.75585 * 0.02562 * 14 13 12 16 16 C 1.40489 * 119.70526 * 359.96864 * 15 14 13 17 17 N 1.33652 * 120.98154 * 179.97438 * 16 15 14 18 18 C 1.31721 * 121.73135 * 180.02562 * 17 16 15 19 19 C 1.47640 * 119.46268 * 179.97438 * 18 17 16 20 20 C 1.35148 * 123.06825 * 335.02090 * 19 18 17 21 21 S 1.70964 * 108.78339 * 180.02562 * 20 19 18 22 22 C 1.70801 * 91.03833 * 359.97438 * 21 20 19 23 23 N 1.28807 * 110.45257 * 359.97438 * 22 21 20 24 24 H 0.97007 * 119.99765 * 359.97438 * 1 2 3 25 25 H 1.08004 * 121.00265 * 359.97438 * 10 9 7 26 26 H 1.07999 * 120.26315 * 0.04838 * 12 11 10 27 27 H 1.07998 * 119.26947 * 180.02562 * 13 12 11 28 28 H 1.08004 * 119.12488 * 179.97438 * 14 13 12 29 29 H 1.07994 * 120.14968 * 180.02562 * 15 14 13 30 30 H 1.08001 * 125.61428 * 0.02562 * 20 19 18 31 31 H 1.08001 * 124.77525 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 2.4894 2.0464 -1.4001 5 1 1.4394 2.6527 0.7000 6 1 3.5394 1.4401 0.7000 7 6 2.0082 -1.2130 0.0005 8 1 3.0713 -1.2228 -0.1887 9 6 1.3260 -2.4195 0.2479 10 6 0.1809 -2.4350 1.0593 11 6 -0.4544 -3.6638 1.2760 12 6 -1.6041 -3.7627 2.0826 13 6 -2.1901 -4.9772 2.2673 14 6 -1.6780 -6.1284 1.6762 15 6 -0.5683 -6.0961 0.8866 16 6 0.0856 -4.8745 0.6544 17 7 1.1765 -4.8136 -0.1154 18 6 1.8014 -3.6765 -0.3426 19 6 3.0027 -3.6670 -1.2009 20 6 3.7902 -4.7507 -1.3792 21 16 5.0688 -4.3344 -2.4350 22 6 4.4748 -2.7391 -2.5754 23 7 3.4076 -2.5924 -1.8692 24 1 -0.4850 0.8401 0.0004 25 1 -0.1960 -1.5272 1.5068 26 1 -2.0179 -2.8818 2.5508 27 1 -3.0721 -5.0492 2.8864 28 1 -2.1731 -7.0727 1.8487 29 1 -0.1934 -7.0053 0.4404 30 1 3.6371 -5.7203 -0.9288 31 1 4.9295 -1.9629 -3.1729 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241889080.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:03 Heat of formation + Delta-G solvation = 90.620105 kcal Electronic energy + Delta-G solvation = -18597.032814 eV Core-core repulsion = 15741.690788 eV Total energy + Delta-G solvation = -2855.342025 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.052 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.50277 -38.54856 -35.78390 -34.19229 -31.70443 -30.60166 -29.47552 -28.31670 -25.57668 -25.16279 -22.71656 -21.83432 -20.62483 -19.35865 -18.21601 -17.64875 -16.28613 -16.02471 -15.37626 -14.86499 -14.41166 -14.05062 -13.52081 -13.35365 -12.87837 -12.82042 -12.73835 -12.50118 -11.96108 -11.73169 -11.34462 -11.24047 -10.99398 -10.81794 -10.66321 -10.45361 -9.94438 -9.58715 -9.12509 -9.03904 -8.92338 -8.58684 -8.32431 -7.27921 -7.12395 -6.95548 -4.46618 1.06679 1.65991 1.88277 2.04920 2.24525 2.91650 2.96537 3.01612 3.17045 3.60295 3.77987 4.05509 4.61911 4.72692 5.36568 5.54333 5.65219 5.69227 5.76323 5.89598 5.97604 6.23995 6.26961 6.38481 6.47836 6.72013 6.85069 6.92593 7.02544 7.27309 7.36616 7.39738 7.71558 7.82270 7.89635 8.27816 8.37890 8.50254 8.57416 9.18766 9.92102 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.011808 B = 0.008340 C = 0.004971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.762072 B = 3356.686784 C = 5631.845689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.067 3.933 3 Si 0.919 3.081 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.385 4.385 8 H 0.097 0.903 9 C 0.080 3.920 10 C -0.170 4.170 11 C -0.044 4.044 12 C -0.130 4.130 13 C -0.116 4.116 14 C -0.182 4.182 15 C -0.056 4.056 16 C 0.021 3.979 17 N -0.453 5.453 18 C 0.131 3.869 19 C 0.141 3.859 20 C -0.269 4.269 21 S 0.120 5.880 22 C -0.007 4.007 23 N -0.412 5.412 24 H 0.286 0.714 25 H 0.133 0.867 26 H 0.111 0.889 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.112 0.888 30 H 0.176 0.824 31 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.148 -3.027 -1.540 6.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.153 4.153 3 Si 0.742 3.258 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.413 4.413 8 H 0.114 0.886 9 C 0.074 3.926 10 C -0.195 4.195 11 C -0.046 4.046 12 C -0.149 4.149 13 C -0.134 4.134 14 C -0.203 4.203 15 C -0.075 4.075 16 C -0.103 4.103 17 N -0.160 5.160 18 C -0.025 4.025 19 C 0.010 3.990 20 C -0.410 4.410 21 S 0.372 5.628 22 C -0.307 4.307 23 N -0.124 5.124 24 H 0.098 0.902 25 H 0.150 0.850 26 H 0.129 0.871 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.130 0.870 30 H 0.193 0.807 31 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 5.740 -3.647 -2.304 7.180 hybrid contribution -0.937 1.547 0.808 1.981 sum 4.803 -2.100 -1.496 5.451 Atomic orbital electron populations 1.69784 1.07808 1.30012 1.32101 1.26104 0.94885 1.01900 0.92445 0.86119 0.80454 0.79599 0.79606 1.19001 1.19969 1.18207 1.19752 0.97071 0.89542 1.34934 0.88562 1.19147 0.92283 0.91613 0.89598 1.21511 0.99802 0.95391 1.02827 1.19694 0.94796 0.94014 0.96130 1.20847 0.96379 0.97019 1.00682 1.20468 0.99510 0.93065 1.00362 1.20234 0.99124 0.97612 1.03302 1.20461 0.94563 0.95567 0.96882 1.19180 0.95574 0.92755 1.02760 1.67201 1.07205 1.27783 1.13834 1.20039 0.94443 0.89825 0.98177 1.18536 0.95949 0.86895 0.97637 1.26350 1.00894 1.05358 1.08432 1.82457 1.28014 1.09943 1.42345 1.28543 0.97727 0.99957 1.04431 1.66903 1.11000 1.28395 1.06128 0.90243 0.84966 0.87093 0.87879 0.87742 0.87021 0.80708 0.78938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.04 10.95 55.55 0.61 -18.43 16 2 C 0.07 1.60 5.24 -17.31 -0.09 1.51 16 3 Si 0.92 17.90 29.58 -169.99 -5.03 12.87 16 4 H -0.27 -5.13 7.11 56.52 0.40 -4.72 16 5 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 6 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 7 C -0.38 -9.72 7.73 -37.93 -0.29 -10.02 16 8 H 0.10 2.39 6.25 -52.49 -0.33 2.06 16 9 C 0.08 2.09 5.70 -104.68 -0.60 1.50 16 10 C -0.17 -4.38 8.50 -38.12 -0.32 -4.70 16 11 C -0.04 -1.06 5.87 -104.97 -0.62 -1.68 16 12 C -0.13 -2.75 9.80 -39.38 -0.39 -3.13 16 13 C -0.12 -2.16 9.91 -40.00 -0.40 -2.56 16 14 C -0.18 -3.37 9.90 -39.95 -0.40 -3.77 16 15 C -0.06 -1.15 9.98 -39.45 -0.39 -1.55 16 16 C 0.02 0.51 6.75 -82.93 -0.56 -0.05 16 17 N -0.45 -11.13 9.94 -4.85 -0.05 -11.18 16 18 C 0.13 3.29 6.86 -80.62 -0.55 2.74 16 19 C 0.14 3.11 6.30 -84.68 -0.53 2.58 16 20 C -0.27 -4.92 10.65 29.63 0.32 -4.60 16 21 S 0.12 1.67 22.97 -107.50 -2.47 -0.80 16 22 C -0.01 -0.11 12.19 51.49 0.63 0.52 16 23 N -0.41 -8.61 7.87 -12.37 -0.10 -8.71 16 24 H 0.29 6.37 8.30 -40.82 -0.34 6.03 16 25 H 0.13 3.43 6.37 -52.48 -0.33 3.10 16 26 H 0.11 2.14 8.06 -52.49 -0.42 1.72 16 27 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 28 H 0.10 1.60 8.06 -52.48 -0.42 1.17 16 29 H 0.11 2.07 8.06 -52.49 -0.42 1.65 16 30 H 0.18 3.05 8.06 -52.49 -0.42 2.63 16 31 H 0.19 2.27 8.06 -52.49 -0.42 1.84 16 LS Contribution 287.26 15.07 4.33 4.33 Total: -1.00 -28.65 287.26 -9.24 -37.88 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -2.33 Total: 7.26 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: -4.20 Total: -23.22 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.46 Total: -38.32 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -2.47 Total: -0.80 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.65 -9.24 -37.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241889080.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.503 kcal (2) G-P(sol) polarization free energy of solvation -28.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds