Wall clock time and date at job start Tue Mar 31 2020 05:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86801 * 120.00165 * 2 1 4 4 H 1.48496 * 109.47295 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46865 * 299.99821 * 3 2 1 6 6 H 1.48500 * 109.47180 * 59.99272 * 3 2 1 7 7 C 1.40017 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00224 * 180.02562 * 7 2 1 9 9 C 1.41361 * 119.99774 * 0.02562 * 7 2 1 10 10 C 1.40712 * 119.76578 * 180.02562 * 9 7 2 11 11 C 1.38276 * 119.19127 * 180.02562 * 10 9 7 12 12 C 1.38708 * 118.69445 * 359.97438 * 11 10 9 13 13 C 1.39906 * 119.46166 * 0.02562 * 12 11 10 14 14 C 1.48260 * 119.60584 * 179.97438 * 13 12 11 15 15 C 1.39836 * 120.40601 * 0.06518 * 14 13 12 16 16 N 1.31059 * 120.90068 * 179.97438 * 15 14 13 17 17 C 1.33544 * 122.35153 * 359.95095 * 16 15 14 18 18 S 1.76043 * 130.14174 * 180.02562 * 17 16 15 19 19 C 1.75269 * 92.25626 * 179.97438 * 18 17 16 20 20 C 1.31744 * 111.48189 * 0.02562 * 19 18 17 21 21 C 1.39975 * 120.39452 * 0.02562 * 17 16 15 22 22 C 1.38922 * 120.40388 * 179.97438 * 14 13 12 23 23 N 1.32254 * 120.78476 * 0.27132 * 13 12 11 24 24 H 0.97000 * 119.99622 * 0.02562 * 1 2 3 25 25 H 1.07993 * 120.40372 * 359.97198 * 10 9 7 26 26 H 1.07993 * 120.65104 * 179.97438 * 11 10 9 27 27 H 1.07993 * 120.27019 * 179.97438 * 12 11 10 28 28 H 1.08002 * 119.54395 * 359.94822 * 15 14 13 29 29 H 1.08004 * 124.25829 * 180.02562 * 19 18 17 30 30 H 1.08002 * 122.58877 * 179.97438 * 20 19 18 31 31 H 1.08000 * 120.68727 * 0.02562 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7015 1.3464 0.0006 5 1 1.8828 2.3964 -1.2126 6 1 1.8827 2.3965 1.2124 7 6 2.0076 -1.2126 0.0005 8 1 3.0875 -1.2126 0.0010 9 6 1.3008 -2.4368 0.0005 10 6 2.0093 -3.6525 0.0016 11 6 1.3059 -4.8430 0.0011 12 6 -0.0804 -4.7975 0.0000 13 6 -0.7282 -3.5574 -0.0010 14 6 -2.2099 -3.5050 -0.0028 15 6 -2.9598 -4.6853 -0.0020 16 7 -4.2699 -4.6502 -0.0030 17 6 -4.9541 -3.5034 -0.0038 18 16 -6.6913 -3.2183 -0.0046 19 6 -6.4757 -1.4789 -0.0046 20 6 -5.1998 -1.1509 -0.0046 21 6 -4.2801 -2.2766 -0.0042 22 6 -2.8701 -2.2827 -0.0033 23 7 -0.0345 -2.4314 -0.0064 24 1 -0.4849 0.8401 -0.0004 25 1 3.0892 -3.6557 0.0020 26 1 1.8257 -5.7896 0.0015 27 1 -0.6551 -5.7118 -0.0009 28 1 -2.4523 -5.6386 -0.0010 29 1 -7.2869 -0.7657 -0.0047 30 1 -4.8630 -0.1247 -0.0050 31 1 -2.3150 -1.3563 -0.0028 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242678773.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:35 Heat of formation + Delta-G solvation = 83.954971 kcal Electronic energy + Delta-G solvation = -18271.854054 eV Core-core repulsion = 15416.223006 eV Total energy + Delta-G solvation = -2855.631047 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.052 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.91708 -38.15515 -35.51568 -33.83884 -32.50104 -30.60403 -30.00085 -28.75364 -25.88851 -24.14686 -23.31075 -21.74583 -21.23113 -19.85529 -18.06618 -17.41725 -16.23103 -15.85414 -15.29916 -14.85973 -14.34767 -14.21006 -14.14367 -13.87041 -13.23651 -12.62160 -12.51775 -12.39294 -12.33346 -11.58784 -11.55419 -11.30538 -11.14467 -10.84362 -10.74650 -10.62483 -10.10424 -9.98693 -9.44655 -9.10810 -8.65959 -8.27696 -7.97548 -7.78983 -7.25717 -6.56601 -4.65422 0.81890 1.29849 1.47777 2.09806 2.45363 2.68755 2.92968 3.02481 3.06228 3.10505 3.85141 4.12635 4.66507 4.69095 4.90806 5.01810 5.34711 5.47916 5.51224 5.78302 5.78381 5.96386 6.02025 6.22159 6.35466 6.44390 6.59686 6.62478 6.91838 6.97870 7.01483 7.18529 7.41954 7.57974 7.87013 8.05119 8.11780 8.52557 8.77485 9.88206 10.16663 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.018414 B = 0.005374 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.247653 B = 5209.036255 C = 6719.441179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.721 5.721 2 C 0.071 3.929 3 Si 0.909 3.091 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.429 4.429 8 H 0.086 0.914 9 C 0.257 3.743 10 C -0.267 4.267 11 C -0.058 4.058 12 C -0.298 4.298 13 C 0.178 3.822 14 C -0.070 4.070 15 C 0.144 3.856 16 N -0.469 5.469 17 C 0.050 3.950 18 S 0.102 5.898 19 C -0.206 4.206 20 C -0.098 4.098 21 C -0.136 4.136 22 C 0.003 3.997 23 N -0.469 5.469 24 H 0.272 0.728 25 H 0.101 0.899 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.167 0.833 29 H 0.168 0.832 30 H 0.148 0.852 31 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.368 -0.666 0.004 8.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.342 5.342 2 C -0.154 4.154 3 Si 0.733 3.267 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.460 4.460 8 H 0.104 0.896 9 C 0.132 3.868 10 C -0.290 4.290 11 C -0.082 4.082 12 C -0.322 4.322 13 C 0.033 3.967 14 C -0.075 4.075 15 C -0.025 4.025 16 N -0.179 5.179 17 C -0.193 4.193 18 S 0.361 5.639 19 C -0.340 4.340 20 C -0.128 4.128 21 C -0.146 4.146 22 C -0.025 4.025 23 N -0.182 5.182 24 H 0.083 0.917 25 H 0.119 0.881 26 H 0.118 0.882 27 H 0.118 0.882 28 H 0.184 0.816 29 H 0.186 0.814 30 H 0.166 0.834 31 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -10.778 -1.312 -0.005 10.857 hybrid contribution 2.583 1.524 0.004 2.999 sum -8.195 0.212 -0.001 8.197 Atomic orbital electron populations 1.70058 1.07324 1.27703 1.29134 1.26033 0.94907 1.01132 0.93283 0.86249 0.80875 0.80995 0.78609 1.18379 1.19784 1.19789 1.19656 0.94382 0.89253 1.42679 0.89615 1.18501 0.87660 0.92117 0.88565 1.21830 0.98930 0.93517 1.14716 1.20794 0.93735 0.96825 0.96806 1.21177 0.94703 0.96567 1.19716 1.19432 0.90506 0.90424 0.96359 1.19639 0.93740 0.93276 1.00858 1.22947 0.87736 0.98489 0.93349 1.67110 1.09255 1.26971 1.14583 1.23509 0.98423 0.92159 1.05252 1.83927 0.99928 1.00381 1.79687 1.25001 1.00391 0.98670 1.09914 1.20858 0.91661 0.99222 1.01071 1.20195 0.95118 0.92778 1.06550 1.22024 0.90380 1.00613 0.89517 1.68683 1.07608 1.25049 1.16856 0.91670 0.88066 0.88186 0.88213 0.81643 0.81412 0.83449 0.81266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -17.67 11.17 55.55 0.62 -17.05 16 2 C 0.07 1.71 5.50 -17.35 -0.10 1.61 16 3 Si 0.91 17.68 29.56 -169.99 -5.02 12.65 16 4 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 5 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 6 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 7 C -0.43 -10.87 9.14 -37.73 -0.34 -11.21 16 8 H 0.09 2.04 7.85 -52.49 -0.41 1.63 16 9 C 0.26 6.69 6.55 -85.01 -0.56 6.13 16 10 C -0.27 -6.23 9.83 -38.63 -0.38 -6.61 16 11 C -0.06 -1.22 10.15 -39.39 -0.40 -1.62 16 12 C -0.30 -6.35 9.48 -38.78 -0.37 -6.71 16 13 C 0.18 4.13 6.74 -82.94 -0.56 3.57 16 14 C -0.07 -1.45 5.88 -104.93 -0.62 -2.07 16 15 C 0.14 2.67 10.58 -17.28 -0.18 2.48 16 16 N -0.47 -8.76 10.36 -11.46 -0.12 -8.88 16 17 C 0.05 0.90 7.65 -16.16 -0.12 0.78 16 18 S 0.10 1.42 23.23 -107.50 -2.50 -1.08 16 19 C -0.21 -2.54 11.01 28.85 0.32 -2.23 16 20 C -0.10 -1.41 10.39 -38.63 -0.40 -1.81 16 21 C -0.14 -2.45 6.05 -105.37 -0.64 -3.08 16 22 C 0.00 0.05 9.73 -38.28 -0.37 -0.32 16 23 N -0.47 -12.14 6.96 -7.68 -0.05 -12.19 16 24 H 0.27 6.01 8.29 -40.82 -0.34 5.67 16 25 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 26 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 27 H 0.10 1.81 6.18 -52.49 -0.32 1.48 16 28 H 0.17 2.64 6.17 -52.49 -0.32 2.32 16 29 H 0.17 1.47 8.06 -52.48 -0.42 1.05 16 30 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 31 H 0.17 3.68 7.30 -52.49 -0.38 3.30 16 LS Contribution 289.30 15.07 4.36 4.36 Total: -1.00 -27.93 289.30 -9.70 -37.63 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -2.27 Total: 5.65 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: -4.72 Total: -21.10 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.45 Total: -38.12 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.02 Total: 12.65 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.50 Total: -1.08 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -27.93 -9.70 -37.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242678773.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.589 kcal (2) G-P(sol) polarization free energy of solvation -27.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds