Wall clock time and date at job start Tue Mar 31 2020 05:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86798 * 119.99947 * 2 1 4 4 H 1.48499 * 109.47099 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47338 * 299.99885 * 3 2 1 6 6 H 1.48500 * 109.47051 * 60.00224 * 3 2 1 7 7 C 1.40047 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00352 * 163.15494 * 7 2 1 9 9 C 1.41529 * 119.99402 * 343.15265 * 7 2 1 10 10 C 1.41154 * 120.99040 * 336.10047 * 9 7 2 11 11 C 1.37715 * 119.07746 * 180.02562 * 10 9 7 12 12 N 1.31935 * 121.16312 * 359.97438 * 11 10 9 13 13 C 1.32797 * 122.20490 * 0.02562 * 12 11 10 14 14 C 1.48327 * 119.61964 * 179.97438 * 13 12 11 15 15 C 1.39787 * 120.39690 * 179.72283 * 14 13 12 16 16 N 1.31083 * 120.90666 * 179.74590 * 15 14 13 17 17 C 1.33533 * 122.33572 * 0.55047 * 16 15 14 18 18 S 1.76045 * 130.14006 * 179.72053 * 17 16 15 19 19 C 1.75272 * 92.25755 * 179.97438 * 18 17 16 20 20 C 1.31754 * 111.47247 * 0.02562 * 19 18 17 21 21 C 1.39959 * 120.39395 * 359.71729 * 17 16 15 22 22 C 1.38859 * 120.40138 * 0.02562 * 14 13 12 23 23 C 1.38939 * 120.76432 * 359.97438 * 13 12 11 24 24 H 0.97001 * 119.99958 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.45751 * 0.02562 * 10 9 7 26 26 H 1.07997 * 119.41744 * 180.02562 * 11 10 9 27 27 H 1.08000 * 119.55088 * 0.02562 * 15 14 13 28 28 H 1.07997 * 124.26256 * 179.97438 * 19 18 17 29 29 H 1.07998 * 122.58579 * 180.02562 * 20 19 18 30 30 H 1.08001 * 120.68038 * 359.94547 * 22 14 13 31 31 H 1.07999 * 120.61960 * 180.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.7013 1.3464 -0.0006 5 1 1.8826 2.3965 -1.2125 6 1 1.8826 2.3964 1.2125 7 6 2.0076 -1.2128 -0.0005 8 1 3.0528 -1.2328 -0.2716 9 6 1.3454 -2.4123 0.3542 10 6 0.1909 -2.3924 1.1661 11 6 -0.4218 -3.5831 1.4876 12 7 0.0514 -4.7344 1.0501 13 6 1.1334 -4.8096 0.2839 14 6 1.6158 -6.1349 -0.1754 15 6 2.7497 -6.2325 -0.9871 16 7 3.1876 -7.3988 -1.3946 17 6 2.5791 -8.5428 -1.0719 18 16 2.9785 -10.2020 -1.5041 19 6 1.6154 -10.8378 -0.6042 20 6 0.9240 -9.8738 -0.0310 21 6 1.4341 -8.5332 -0.2670 22 6 0.9430 -7.2931 0.1906 23 6 1.8189 -3.6612 -0.0925 24 1 -0.4850 0.8401 0.0004 25 1 -0.2063 -1.4564 1.5301 26 1 -1.3057 -3.5742 2.1081 27 1 3.2748 -5.3349 -1.2788 28 1 1.3724 -11.8874 -0.5297 29 1 0.0464 -10.0649 0.5687 30 1 0.0621 -7.2451 0.8137 31 1 2.6984 -3.7250 -0.7160 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242678883.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:17 Heat of formation + Delta-G solvation = 72.972277 kcal Electronic energy + Delta-G solvation = -17848.635223 eV Core-core repulsion = 14992.527930 eV Total energy + Delta-G solvation = -2856.107293 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.052 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.07920 -38.30386 -35.64902 -34.34019 -32.51977 -30.94575 -30.04258 -28.34112 -26.13252 -24.27041 -23.53626 -21.93039 -21.19550 -20.11423 -18.14526 -17.48388 -16.45482 -15.77216 -15.47418 -14.87136 -14.44636 -14.35238 -14.28566 -13.96591 -13.39200 -12.83098 -12.71005 -12.56627 -12.46997 -11.96017 -11.66250 -11.49765 -11.26663 -11.05670 -10.85959 -10.41332 -10.08752 -10.03340 -9.53294 -9.24743 -8.73368 -8.21744 -8.16466 -8.13107 -7.26819 -6.97495 -4.72933 0.68823 1.12294 1.35413 1.97660 2.31820 2.62224 2.74891 2.96734 3.01937 3.12655 3.76811 3.99613 4.51799 4.55989 4.78336 4.85508 5.16821 5.27826 5.34580 5.52789 5.60235 5.82982 5.96860 6.04684 6.27659 6.40354 6.60206 6.72403 6.74856 6.89887 6.97351 7.17960 7.29655 7.70935 7.88481 8.00394 8.30508 8.58022 8.60500 9.38129 9.94110 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.038474 B = 0.003589 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.597456 B = 7798.818393 C = 8449.316576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.077 3.923 3 Si 0.913 3.087 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.453 4.453 8 H 0.085 0.915 9 C 0.126 3.874 10 C -0.205 4.205 11 C 0.089 3.911 12 N -0.565 5.565 13 C 0.153 3.847 14 C -0.060 4.060 15 C 0.146 3.854 16 N -0.462 5.462 17 C 0.048 3.952 18 S 0.110 5.890 19 C -0.203 4.203 20 C -0.104 4.104 21 C -0.133 4.133 22 C -0.013 4.013 23 C -0.248 4.248 24 H 0.285 0.715 25 H 0.128 0.872 26 H 0.124 0.876 27 H 0.171 0.829 28 H 0.170 0.830 29 H 0.147 0.853 30 H 0.150 0.850 31 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.589 -11.732 -0.220 11.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.143 4.143 3 Si 0.737 3.263 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.483 4.483 8 H 0.103 0.897 9 C 0.119 3.881 10 C -0.228 4.228 11 C -0.063 4.063 12 N -0.280 5.280 13 C 0.019 3.981 14 C -0.066 4.066 15 C -0.023 4.023 16 N -0.172 5.172 17 C -0.196 4.196 18 S 0.369 5.631 19 C -0.336 4.336 20 C -0.134 4.134 21 C -0.143 4.143 22 C -0.041 4.041 23 C -0.272 4.272 24 H 0.096 0.904 25 H 0.146 0.854 26 H 0.142 0.858 27 H 0.188 0.812 28 H 0.187 0.813 29 H 0.165 0.835 30 H 0.168 0.832 31 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.783 -13.198 -1.362 13.557 hybrid contribution -1.202 2.385 1.085 2.882 sum 1.581 -10.814 -0.277 10.932 Atomic orbital electron populations 1.69760 1.07794 1.29752 1.33453 1.25995 0.94789 1.01722 0.91779 0.86174 0.81034 0.80338 0.78781 1.18137 1.19746 1.19483 1.19670 0.98024 0.90691 1.39956 0.89735 1.17759 0.90746 0.91981 0.87659 1.22295 1.00115 0.98251 1.02108 1.21941 0.98102 0.88311 0.97946 1.67211 1.14478 1.29484 1.16789 1.18806 0.93205 0.89735 0.96385 1.19625 0.95749 0.93349 0.97837 1.23032 0.92791 0.94425 0.92101 1.67154 1.30786 0.96662 1.22603 1.23528 0.96626 0.98167 1.01270 1.84033 1.29791 0.94271 1.54964 1.25050 1.00522 1.03303 1.04762 1.20810 1.01194 0.89980 1.01462 1.20133 0.97430 0.94758 1.01968 1.21560 0.98404 0.88706 0.95411 1.21845 1.04381 0.92840 1.08133 0.90439 0.85416 0.85814 0.81196 0.81306 0.83540 0.83243 0.87512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.86 10.92 55.55 0.61 -18.26 16 2 C 0.08 1.81 5.20 -17.34 -0.09 1.72 16 3 Si 0.91 17.39 29.59 -169.99 -5.03 12.36 16 4 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 5 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 6 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.45 -11.19 9.12 -37.65 -0.34 -11.53 16 8 H 0.08 1.99 7.90 -52.49 -0.41 1.58 16 9 C 0.13 3.17 5.60 -106.56 -0.60 2.57 16 10 C -0.21 -5.02 8.79 -38.67 -0.34 -5.36 16 11 C 0.09 2.02 11.15 -17.70 -0.20 1.82 16 12 N -0.56 -12.87 9.44 -9.95 -0.09 -12.96 16 13 C 0.15 3.40 6.73 -83.04 -0.56 2.84 16 14 C -0.06 -1.17 5.88 -104.94 -0.62 -1.78 16 15 C 0.15 2.63 10.58 -17.29 -0.18 2.45 16 16 N -0.46 -8.31 10.36 -11.47 -0.12 -8.43 16 17 C 0.05 0.80 7.65 -16.17 -0.12 0.67 16 18 S 0.11 1.41 23.23 -107.50 -2.50 -1.09 16 19 C -0.20 -2.18 11.01 28.85 0.32 -1.86 16 20 C -0.10 -1.28 10.39 -38.64 -0.40 -1.68 16 21 C -0.13 -2.12 6.05 -105.37 -0.64 -2.76 16 22 C -0.01 -0.23 9.73 -38.30 -0.37 -0.60 16 23 C -0.25 -5.74 9.26 -38.34 -0.35 -6.09 16 24 H 0.28 6.18 8.29 -40.82 -0.34 5.84 16 25 H 0.13 3.17 6.20 -52.49 -0.33 2.84 16 26 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 27 H 0.17 2.79 6.18 -52.49 -0.32 2.46 16 28 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 29 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.15 2.54 7.58 -52.49 -0.40 2.14 16 31 H 0.11 2.22 6.19 -52.49 -0.33 1.90 16 LS Contribution 288.51 15.07 4.35 4.35 Total: -1.00 -27.43 288.51 -9.47 -36.90 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -2.19 Total: 6.72 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -4.50 Total: -19.59 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.39 Total: -39.65 kcal Atomic # 14 Polarization: 17.39 SS G_CDS: -5.03 Total: 12.36 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.50 Total: -1.09 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.43 -9.47 -36.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242678883.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.871 kcal (2) G-P(sol) polarization free energy of solvation -27.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds