Wall clock time and date at job start Tue Mar 31 2020 05:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86798 * 119.99947 * 2 1 4 4 H 1.48499 * 109.47099 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47338 * 299.99885 * 3 2 1 6 6 H 1.48500 * 109.47051 * 60.00224 * 3 2 1 7 7 C 1.40047 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00352 * 163.15494 * 7 2 1 9 9 C 1.41529 * 119.99402 * 343.15265 * 7 2 1 10 10 C 1.41154 * 120.99040 * 336.10047 * 9 7 2 11 11 C 1.37715 * 119.07746 * 180.02562 * 10 9 7 12 12 N 1.31935 * 121.16312 * 359.97438 * 11 10 9 13 13 C 1.32797 * 122.20490 * 0.02562 * 12 11 10 14 14 C 1.48327 * 119.61964 * 179.97438 * 13 12 11 15 15 C 1.39787 * 120.39690 * 179.72283 * 14 13 12 16 16 N 1.31083 * 120.90666 * 179.74590 * 15 14 13 17 17 C 1.33533 * 122.33572 * 0.55047 * 16 15 14 18 18 S 1.76045 * 130.14006 * 179.72053 * 17 16 15 19 19 C 1.75272 * 92.25755 * 179.97438 * 18 17 16 20 20 C 1.31754 * 111.47247 * 0.02562 * 19 18 17 21 21 C 1.39959 * 120.39395 * 359.71729 * 17 16 15 22 22 C 1.38859 * 120.40138 * 0.02562 * 14 13 12 23 23 C 1.38939 * 120.76432 * 359.97438 * 13 12 11 24 24 H 0.97001 * 119.99958 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.45751 * 0.02562 * 10 9 7 26 26 H 1.07997 * 119.41744 * 180.02562 * 11 10 9 27 27 H 1.08000 * 119.55088 * 0.02562 * 15 14 13 28 28 H 1.07997 * 124.26256 * 179.97438 * 19 18 17 29 29 H 1.07998 * 122.58579 * 180.02562 * 20 19 18 30 30 H 1.08001 * 120.68038 * 359.94547 * 22 14 13 31 31 H 1.07999 * 120.61960 * 180.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.7013 1.3464 -0.0006 5 1 1.8826 2.3965 -1.2125 6 1 1.8826 2.3964 1.2125 7 6 2.0076 -1.2128 -0.0005 8 1 3.0528 -1.2328 -0.2716 9 6 1.3454 -2.4123 0.3542 10 6 0.1909 -2.3924 1.1661 11 6 -0.4218 -3.5831 1.4876 12 7 0.0514 -4.7344 1.0501 13 6 1.1334 -4.8096 0.2839 14 6 1.6158 -6.1349 -0.1754 15 6 2.7497 -6.2325 -0.9871 16 7 3.1876 -7.3988 -1.3946 17 6 2.5791 -8.5428 -1.0719 18 16 2.9785 -10.2020 -1.5041 19 6 1.6154 -10.8378 -0.6042 20 6 0.9240 -9.8738 -0.0310 21 6 1.4341 -8.5332 -0.2670 22 6 0.9430 -7.2931 0.1906 23 6 1.8189 -3.6612 -0.0925 24 1 -0.4850 0.8401 0.0004 25 1 -0.2063 -1.4564 1.5301 26 1 -1.3057 -3.5742 2.1081 27 1 3.2748 -5.3349 -1.2788 28 1 1.3724 -11.8874 -0.5297 29 1 0.0464 -10.0649 0.5687 30 1 0.0621 -7.2451 0.8137 31 1 2.6984 -3.7250 -0.7160 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242678883.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:17 Heat of formation + Delta-G solvation = 58.619144 kcal Electronic energy + Delta-G solvation = -17849.257622 eV Core-core repulsion = 14992.527930 eV Total energy + Delta-G solvation = -2856.729691 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.052 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.42244 -39.99538 -36.79598 -36.08580 -34.01599 -32.72540 -31.40267 -29.83567 -27.93368 -25.63361 -24.91180 -23.38251 -22.84754 -21.48174 -19.50517 -19.03820 -17.79878 -17.41808 -16.82717 -16.39828 -16.00727 -15.84230 -15.65143 -15.31102 -14.78742 -14.40225 -14.28921 -14.09972 -13.61792 -13.44470 -13.14806 -12.91928 -12.76441 -12.72203 -11.99911 -11.88519 -11.83061 -11.48523 -11.24058 -10.59381 -10.05158 -10.01726 -9.97187 -9.39548 -8.78403 -8.67644 -6.60018 -0.55732 -0.24357 0.24766 0.86802 0.97171 1.01631 1.31352 1.39779 1.53749 1.55785 2.17402 2.54288 2.83916 3.27427 3.48020 3.59418 3.70897 3.86108 3.93397 4.19367 4.43064 4.51733 4.70696 4.76098 4.91148 4.95931 4.99256 5.17139 5.19254 5.25341 5.37840 5.48808 5.51301 5.87775 6.11551 6.46535 6.63659 6.74711 6.76965 7.58644 8.21052 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.038474 B = 0.003589 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.597456 B = 7798.818393 C = 8449.316576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.039 3.961 3 Si 0.987 3.013 4 H -0.256 1.256 5 H -0.265 1.265 6 H -0.262 1.262 7 C -0.484 4.484 8 H 0.085 0.915 9 C 0.100 3.900 10 C -0.230 4.230 11 C 0.088 3.912 12 N -0.571 5.571 13 C 0.156 3.844 14 C -0.087 4.087 15 C 0.140 3.860 16 N -0.476 5.476 17 C 0.019 3.981 18 S 0.138 5.862 19 C -0.175 4.175 20 C -0.120 4.120 21 C -0.137 4.137 22 C -0.012 4.012 23 C -0.268 4.268 24 H 0.294 0.706 25 H 0.118 0.882 26 H 0.152 0.848 27 H 0.176 0.824 28 H 0.215 0.785 29 H 0.176 0.824 30 H 0.152 0.848 31 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.709 -13.826 -0.316 13.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.178 4.178 3 Si 0.807 3.193 4 H -0.180 1.180 5 H -0.190 1.190 6 H -0.187 1.187 7 C -0.514 4.514 8 H 0.104 0.896 9 C 0.093 3.907 10 C -0.253 4.253 11 C -0.064 4.064 12 N -0.286 5.286 13 C 0.022 3.978 14 C -0.093 4.093 15 C -0.030 4.030 16 N -0.186 5.186 17 C -0.224 4.224 18 S 0.398 5.602 19 C -0.308 4.308 20 C -0.150 4.150 21 C -0.148 4.148 22 C -0.040 4.040 23 C -0.291 4.291 24 H 0.105 0.895 25 H 0.136 0.864 26 H 0.169 0.831 27 H 0.193 0.807 28 H 0.232 0.768 29 H 0.193 0.807 30 H 0.170 0.830 31 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.901 -15.319 -1.462 15.660 hybrid contribution -1.246 2.743 1.068 3.196 sum 1.655 -12.576 -0.394 12.691 Atomic orbital electron populations 1.69800 1.09171 1.31209 1.33477 1.26845 0.95517 1.04745 0.90728 0.85075 0.79458 0.75665 0.79085 1.17981 1.18966 1.18686 1.19952 0.98361 0.91731 1.41387 0.89641 1.18147 0.91404 0.93036 0.88148 1.22277 1.00965 0.98520 1.03525 1.22347 0.98564 0.87830 0.97616 1.67325 1.14840 1.29255 1.17199 1.19211 0.92476 0.90977 0.95184 1.19520 0.97246 0.92591 0.99926 1.23053 0.92664 0.95031 0.92206 1.67203 1.31249 0.97094 1.23013 1.24239 0.97156 0.99479 1.01538 1.84027 1.30486 0.91130 1.54569 1.25607 0.98223 1.05106 1.01906 1.21016 1.02801 0.88140 1.03023 1.20485 0.97197 0.95848 1.01235 1.21635 0.98179 0.89076 0.95093 1.22045 1.05314 0.92755 1.08973 0.89525 0.86423 0.83111 0.80739 0.76807 0.80707 0.83028 0.86261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.98 10.92 21.84 0.24 -39.74 16 2 C 0.04 1.87 5.20 85.29 0.44 2.31 16 3 Si 0.99 35.80 29.59 68.60 2.03 37.83 16 4 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 5 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 6 H -0.26 -9.13 7.11 99.48 0.71 -8.43 16 7 C -0.48 -24.77 9.12 23.52 0.21 -24.55 16 8 H 0.09 4.18 7.90 -2.91 -0.02 4.16 16 9 C 0.10 5.25 5.60 -21.12 -0.12 5.14 16 10 C -0.23 -11.72 8.79 22.86 0.20 -11.52 16 11 C 0.09 4.10 11.15 84.55 0.94 5.04 16 12 N -0.57 -26.47 9.44 -185.38 -1.75 -28.22 16 13 C 0.16 7.12 6.73 41.85 0.28 7.40 16 14 C -0.09 -3.44 5.88 -20.07 -0.12 -3.56 16 15 C 0.14 5.16 10.58 85.18 0.90 6.06 16 16 N -0.48 -17.06 10.36 -190.20 -1.97 -19.03 16 17 C 0.02 0.61 7.65 84.85 0.65 1.26 16 18 S 0.14 3.12 23.23 -56.49 -1.31 1.81 16 19 C -0.17 -2.93 11.01 67.09 0.74 -2.20 16 20 C -0.12 -2.53 10.39 23.37 0.24 -2.29 16 21 C -0.14 -4.15 6.05 -20.35 -0.12 -4.27 16 22 C -0.01 -0.42 9.73 23.10 0.22 -0.20 16 23 C -0.27 -12.89 9.26 23.07 0.21 -12.68 16 24 H 0.29 12.91 8.29 -92.71 -0.77 12.14 16 25 H 0.12 6.11 6.20 -2.91 -0.02 6.09 16 26 H 0.15 5.95 8.06 -2.91 -0.02 5.93 16 27 H 0.18 5.99 6.18 -2.91 -0.02 5.97 16 28 H 0.22 1.68 8.06 -2.91 -0.02 1.66 16 29 H 0.18 2.66 8.06 -2.91 -0.02 2.64 16 30 H 0.15 5.09 7.58 -2.91 -0.02 5.07 16 31 H 0.12 5.22 6.19 -2.91 -0.02 5.20 16 Total: -1.00 -61.03 288.51 3.11 -57.91 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: 1.18 Total: 23.48 kcal Atomic # 6 Polarization: -38.73 SS G_CDS: 4.69 Total: -34.04 kcal Atomic # 7 Polarization: -83.51 SS G_CDS: -3.48 Total: -86.99 kcal Atomic # 14 Polarization: 35.80 SS G_CDS: 2.03 Total: 37.83 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -1.31 Total: 1.81 kcal Total: -61.03 3.11 -57.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242678883.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.533 kcal (2) G-P(sol) polarization free energy of solvation -61.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds