Wall clock time and date at job start Tue Mar 31 2020 05:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30836 * 1 3 3 Si 1.86803 * 119.99965 * 2 1 4 4 H 1.48499 * 109.46588 * 239.99519 * 3 2 1 5 5 H 1.48498 * 109.47288 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47297 * 119.99601 * 3 2 1 7 7 C 1.39932 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99337 * 163.64607 * 7 2 1 9 9 C 1.41433 * 120.00415 * 343.65139 * 7 2 1 10 10 C 1.40811 * 120.60784 * 155.72798 * 9 7 2 11 11 N 1.31488 * 120.66596 * 179.97438 * 10 9 7 12 12 C 1.31940 * 122.12010 * 359.70172 * 11 10 9 13 13 C 1.39677 * 121.14852 * 0.59619 * 12 11 10 14 14 C 1.48417 * 120.40858 * 179.69408 * 13 12 11 15 15 C 1.39751 * 120.39467 * 179.44758 * 14 13 12 16 16 N 1.31098 * 120.90813 * 179.74521 * 15 14 13 17 17 C 1.33511 * 122.33911 * 0.54378 * 16 15 14 18 18 S 1.76045 * 130.14426 * 179.72086 * 17 16 15 19 19 C 1.75269 * 92.25468 * 179.97438 * 18 17 16 20 20 C 1.31768 * 111.47043 * 0.02562 * 19 18 17 21 21 C 1.39939 * 120.38713 * 359.72295 * 17 16 15 22 22 C 1.38816 * 120.39595 * 359.71812 * 14 13 12 23 23 C 1.39164 * 119.18072 * 359.42306 * 13 12 11 24 24 H 0.97000 * 119.99384 * 0.02562 * 1 2 3 25 25 H 1.08000 * 119.66217 * 0.02562 * 10 9 7 26 26 H 1.08001 * 119.42878 * 180.31073 * 12 11 10 27 27 H 1.07995 * 119.54238 * 359.97438 * 15 14 13 28 28 H 1.08000 * 124.26770 * 180.02562 * 19 18 17 29 29 H 1.07995 * 122.58606 * 180.02562 * 20 19 18 30 30 H 1.07997 * 120.68057 * 0.02562 * 22 14 13 31 31 H 1.08009 * 120.95148 * 180.29764 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 3.0962 1.6963 -1.2125 5 1 1.2774 2.7465 -0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0552 -1.2308 -0.2628 9 6 1.3437 -2.4118 0.3458 10 6 1.8230 -3.6540 -0.1124 11 7 1.2067 -4.7704 0.2083 12 6 0.1284 -4.7829 0.9686 13 6 -0.4209 -3.5976 1.4629 14 6 -1.6383 -3.6303 2.3112 15 6 -2.1811 -2.4452 2.8151 16 7 -3.2589 -2.4619 3.5612 17 6 -3.8846 -3.5955 3.8868 18 16 -5.3229 -3.8566 4.8677 19 6 -5.2466 -5.5929 4.6411 20 6 -4.2205 -5.9366 3.8892 21 6 -3.4032 -4.8267 3.4278 22 6 -2.2483 -4.8389 2.6181 23 6 0.1907 -2.3861 1.1548 24 1 -0.4849 0.8401 -0.0004 25 1 2.7062 -3.6902 -0.7329 26 1 -0.3404 -5.7257 1.2091 27 1 -1.7082 -1.5023 2.5836 28 1 -5.9517 -6.2930 5.0644 29 1 -4.0040 -6.9635 3.6348 30 1 -1.8463 -5.7694 2.2453 31 1 -0.2070 -1.4529 1.5258 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242680399.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:42 Heat of formation + Delta-G solvation = 72.280307 kcal Electronic energy + Delta-G solvation = -18087.399991 eV Core-core repulsion = 15231.262692 eV Total energy + Delta-G solvation = -2856.137299 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.052 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.09604 -38.33244 -35.65685 -34.26168 -33.07699 -30.72594 -29.99637 -28.45370 -25.86380 -24.22305 -23.64779 -21.91013 -21.33731 -19.97778 -18.12841 -17.41975 -16.48825 -15.89378 -15.53379 -15.17451 -14.60416 -14.32651 -14.30290 -14.05885 -13.26210 -12.90235 -12.61338 -12.47927 -12.34432 -11.74106 -11.64462 -11.54004 -11.38907 -11.06953 -10.85047 -10.69239 -10.26241 -10.05131 -9.51648 -9.31057 -8.88981 -8.29095 -8.20264 -7.96631 -7.31585 -6.97105 -4.64243 0.70262 1.08533 1.36891 1.98696 2.32005 2.56777 2.82356 2.96694 2.98164 3.09434 3.76311 4.01691 4.49166 4.52104 4.80865 4.91545 5.18835 5.24258 5.49909 5.51957 5.57269 5.76357 5.89420 6.00485 6.23763 6.30625 6.38265 6.58413 6.77789 6.85565 6.95361 7.04906 7.46377 7.67224 7.72276 8.00885 8.25284 8.51353 8.53920 9.44812 9.92789 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.023571 B = 0.004501 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.599104 B = 6219.763628 C = 7330.943269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.447 4.447 8 H 0.085 0.915 9 C 0.062 3.938 10 C -0.012 4.012 11 N -0.468 5.468 12 C -0.023 4.023 13 C -0.092 4.092 14 C -0.053 4.053 15 C 0.145 3.855 16 N -0.459 5.459 17 C 0.043 3.957 18 S 0.110 5.890 19 C -0.201 4.201 20 C -0.107 4.107 21 C -0.125 4.125 22 C -0.044 4.044 23 C -0.114 4.114 24 H 0.287 0.713 25 H 0.129 0.871 26 H 0.122 0.878 27 H 0.172 0.828 28 H 0.169 0.831 29 H 0.146 0.854 30 H 0.142 0.858 31 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.687 -4.911 6.929 11.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.145 4.145 3 Si 0.738 3.262 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.476 4.476 8 H 0.103 0.897 9 C 0.058 3.942 10 C -0.173 4.173 11 N -0.174 5.174 12 C -0.181 4.181 13 C -0.095 4.095 14 C -0.058 4.058 15 C -0.024 4.024 16 N -0.169 5.169 17 C -0.200 4.200 18 S 0.369 5.631 19 C -0.335 4.335 20 C -0.138 4.138 21 C -0.136 4.136 22 C -0.071 4.071 23 C -0.139 4.139 24 H 0.098 0.902 25 H 0.147 0.853 26 H 0.139 0.861 27 H 0.189 0.811 28 H 0.187 0.813 29 H 0.164 0.836 30 H 0.160 0.840 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.013 -3.882 7.766 12.514 hybrid contribution 1.214 -0.085 -0.868 1.495 sum -7.799 -3.968 6.898 11.142 Atomic orbital electron populations 1.69747 1.07697 1.30087 1.33893 1.25986 0.94847 1.01719 0.91904 0.86248 0.80121 0.79592 0.80236 1.18746 1.20088 1.18577 1.19563 0.97861 0.90612 1.39602 0.89656 1.18453 0.92063 0.93824 0.89862 1.22600 1.02251 0.88053 1.04413 1.66952 1.07692 1.31718 1.11079 1.21728 0.96996 0.95254 1.04156 1.19237 0.94437 0.95913 0.99901 1.19784 0.95863 0.93252 0.96903 1.23118 0.89761 0.98874 0.90691 1.67133 1.08778 1.27378 1.13570 1.23488 1.01076 0.92110 1.03359 1.84045 1.25157 1.00689 1.53201 1.25059 1.03574 0.98930 1.05916 1.20793 0.94842 0.99045 0.99099 1.20043 0.98369 0.93035 1.02111 1.21448 0.92314 0.98749 0.94634 1.21826 0.97757 0.95820 0.98532 0.90205 0.85349 0.86081 0.81083 0.81322 0.83595 0.84043 0.84825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.69 10.90 55.55 0.61 -18.08 16 2 C 0.07 1.71 5.20 -17.34 -0.09 1.62 16 3 Si 0.91 17.27 29.59 -169.99 -5.03 12.24 16 4 H -0.26 -4.93 7.11 56.52 0.40 -4.52 16 5 H -0.28 -5.12 7.11 56.52 0.40 -4.72 16 6 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 7 C -0.45 -10.85 9.09 -37.73 -0.34 -11.19 16 8 H 0.09 1.96 7.90 -52.49 -0.41 1.54 16 9 C 0.06 1.55 5.59 -106.71 -0.60 0.95 16 10 C -0.01 -0.28 10.96 -16.73 -0.18 -0.47 16 11 N -0.47 -11.02 10.32 -12.28 -0.13 -11.14 16 12 C -0.02 -0.51 10.60 -16.97 -0.18 -0.69 16 13 C -0.09 -2.01 5.88 -104.82 -0.62 -2.62 16 14 C -0.05 -1.02 5.88 -104.93 -0.62 -1.64 16 15 C 0.14 2.77 10.60 -17.30 -0.18 2.58 16 16 N -0.46 -8.65 10.36 -11.49 -0.12 -8.77 16 17 C 0.04 0.73 7.65 -16.18 -0.12 0.61 16 18 S 0.11 1.44 23.23 -107.50 -2.50 -1.06 16 19 C -0.20 -2.18 11.01 28.84 0.32 -1.86 16 20 C -0.11 -1.30 10.39 -38.64 -0.40 -1.70 16 21 C -0.13 -1.98 6.05 -105.37 -0.64 -2.62 16 22 C -0.04 -0.74 9.59 -38.30 -0.37 -1.11 16 23 C -0.11 -2.71 8.17 -38.24 -0.31 -3.03 16 24 H 0.29 6.21 8.30 -40.82 -0.34 5.87 16 25 H 0.13 2.83 8.06 -52.49 -0.42 2.40 16 26 H 0.12 2.28 6.24 -52.49 -0.33 1.95 16 27 H 0.17 3.23 6.26 -52.49 -0.33 2.90 16 28 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.15 1.37 8.06 -52.49 -0.42 0.94 16 30 H 0.14 2.06 6.29 -52.49 -0.33 1.73 16 31 H 0.13 3.17 4.46 -52.48 -0.23 2.94 16 LS Contribution 286.00 15.07 4.31 4.31 Total: -1.00 -27.10 286.00 -9.23 -36.33 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -2.04 Total: 7.33 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -4.33 Total: -21.16 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.36 Total: -38.00 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.03 Total: 12.24 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.50 Total: -1.06 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -27.10 -9.23 -36.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242680399.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.612 kcal (2) G-P(sol) polarization free energy of solvation -27.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds