Wall clock time and date at job start Tue Mar 31 2020 05:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30763 * 1 3 3 Si 1.86796 * 120.00087 * 2 1 4 4 H 1.48500 * 109.47112 * 269.99955 * 3 2 1 5 5 H 1.48505 * 109.47288 * 29.99679 * 3 2 1 6 6 H 1.48503 * 109.47556 * 149.99722 * 3 2 1 7 7 C 1.40099 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99748 * 187.23807 * 7 2 1 9 9 C 1.40740 * 119.99868 * 6.97068 * 7 2 1 10 10 C 1.40399 * 120.42511 * 39.44524 * 9 7 2 11 11 C 1.39974 * 117.98794 * 179.97438 * 10 9 7 12 12 C 1.40801 * 121.39084 * 179.97438 * 11 10 9 13 13 C 1.36119 * 119.47386 * 180.02562 * 12 11 10 14 14 C 1.39195 * 121.48305 * 0.02579 * 13 12 11 15 15 C 1.36201 * 121.76071 * 359.97438 * 14 13 12 16 16 C 1.40556 * 119.70361 * 359.97438 * 15 14 13 17 17 N 1.33529 * 120.96304 * 179.97438 * 16 15 14 18 18 C 1.31824 * 121.73472 * 179.75908 * 17 16 15 19 19 C 1.47274 * 119.47198 * 180.26398 * 18 17 16 20 20 N 1.30485 * 125.46944 * 6.13202 * 19 18 17 21 21 C 1.30902 * 117.09946 * 179.97438 * 20 19 18 22 22 C 1.34190 * 115.82196 * 0.02562 * 21 20 19 23 23 S 1.76176 * 125.46450 * 185.82693 * 19 18 17 24 24 H 0.96996 * 119.99596 * 0.02562 * 1 2 3 25 25 H 1.07996 * 121.01033 * 0.02562 * 10 9 7 26 26 H 1.08001 * 120.26730 * 0.05377 * 12 11 10 27 27 H 1.08000 * 119.25530 * 180.02562 * 13 12 11 28 28 H 1.08000 * 119.11591 * 179.97438 * 14 13 12 29 29 H 1.08001 * 120.14979 * 180.02562 * 15 14 13 30 30 H 1.07996 * 122.08437 * 180.02562 * 21 20 19 31 31 H 1.08008 * 125.90512 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.4891 2.0464 -1.4001 5 1 1.4391 2.6527 0.7000 6 1 3.5392 1.4402 0.7001 7 6 2.0081 -1.2133 0.0005 8 1 3.0816 -1.2169 0.1184 9 6 1.3122 -2.4277 -0.1468 10 6 0.2348 -2.5257 -1.0417 11 6 -0.4207 -3.7578 -1.1482 12 6 -1.5098 -3.9360 -2.0226 13 6 -2.1189 -5.1511 -2.0948 14 6 -1.6901 -6.2263 -1.3217 15 6 -0.6427 -6.1158 -0.4581 16 6 0.0320 -4.8889 -0.3351 17 7 1.0617 -4.7523 0.5041 18 6 1.7083 -3.6102 0.6281 19 6 2.8409 -3.5168 1.5648 20 7 3.3581 -4.5137 2.2292 21 6 4.3661 -4.2443 3.0198 22 6 4.7539 -2.9601 3.0556 23 16 3.7197 -2.0426 1.9624 24 1 -0.4849 0.8400 -0.0004 25 1 -0.0782 -1.6763 -1.6308 26 1 -1.8589 -3.1152 -2.6316 27 1 -2.9538 -5.2840 -2.7669 28 1 -2.2016 -7.1735 -1.4090 29 1 -0.3316 -6.9672 0.1290 30 1 4.8550 -5.0079 3.6065 31 1 5.5628 -2.5590 3.6484 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242895522.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:05 Heat of formation + Delta-G solvation = 84.856849 kcal Electronic energy + Delta-G solvation = -18547.402539 eV Core-core repulsion = 15691.810600 eV Total energy + Delta-G solvation = -2855.591939 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.052 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.23227 -38.43944 -36.13959 -34.28387 -31.94332 -30.81216 -29.48530 -28.34924 -25.95984 -25.04925 -22.41912 -21.98265 -20.88373 -18.90094 -18.41390 -17.54889 -16.23383 -16.15237 -15.42335 -14.98348 -14.37000 -13.89111 -13.64113 -13.59658 -13.06377 -12.88043 -12.75451 -12.36743 -12.01420 -11.94442 -11.66934 -11.44241 -10.92867 -10.88639 -10.63211 -10.47512 -10.08642 -9.55910 -9.19485 -8.89353 -8.77507 -8.45402 -8.33188 -7.37528 -7.23119 -7.10617 -4.84890 0.85573 1.70796 1.95526 2.13991 2.60952 2.82298 2.87940 2.91500 3.22024 3.51173 3.64870 3.99053 4.47277 4.77326 5.28877 5.33707 5.48296 5.57214 5.73023 5.84314 5.98521 6.08453 6.10913 6.22165 6.41046 6.57616 6.69528 6.80667 6.84238 7.06343 7.17812 7.21564 7.44820 7.48847 7.67002 7.99317 8.22424 8.28317 8.49674 9.06248 9.77210 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.013756 B = 0.008249 C = 0.005244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.940542 B = 3393.545177 C = 5338.178945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.082 3.918 3 Si 0.908 3.092 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.251 1.251 7 C -0.449 4.449 8 H 0.099 0.901 9 C 0.086 3.914 10 C -0.134 4.134 11 C -0.051 4.051 12 C -0.122 4.122 13 C -0.116 4.116 14 C -0.165 4.165 15 C -0.059 4.059 16 C 0.044 3.956 17 N -0.423 5.423 18 C 0.128 3.872 19 C 0.146 3.854 20 N -0.470 5.470 21 C 0.034 3.966 22 C -0.331 4.331 23 S 0.162 5.838 24 H 0.291 0.709 25 H 0.131 0.869 26 H 0.115 0.885 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.118 0.882 30 H 0.156 0.844 31 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.775 0.142 -0.419 1.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.186 1.186 5 H -0.195 1.195 6 H -0.175 1.175 7 C -0.482 4.482 8 H 0.116 0.884 9 C 0.080 3.920 10 C -0.160 4.160 11 C -0.055 4.055 12 C -0.141 4.141 13 C -0.135 4.135 14 C -0.186 4.186 15 C -0.078 4.078 16 C -0.082 4.082 17 N -0.132 5.132 18 C -0.025 4.025 19 C -0.127 4.127 20 N -0.185 5.185 21 C -0.120 4.120 22 C -0.470 4.470 23 S 0.420 5.580 24 H 0.102 0.898 25 H 0.149 0.851 26 H 0.133 0.867 27 H 0.126 0.874 28 H 0.127 0.873 29 H 0.136 0.864 30 H 0.174 0.826 31 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.573 0.054 -0.212 1.588 hybrid contribution 0.471 0.812 0.237 0.968 sum 2.044 0.865 0.025 2.220 Atomic orbital electron populations 1.69690 1.07620 1.30542 1.32020 1.25889 0.94946 1.01352 0.91772 0.86237 0.80921 0.79673 0.80082 1.18595 1.19542 1.17455 1.19425 0.95080 0.90147 1.43550 0.88404 1.19106 0.92706 0.91134 0.89082 1.21466 0.99389 0.95024 1.00167 1.19793 0.95317 0.94333 0.96018 1.20902 0.96331 0.97162 0.99692 1.20548 0.99794 0.93462 0.99675 1.20367 0.99485 0.98604 1.00132 1.20589 0.94489 0.95486 0.97213 1.19441 0.96392 0.93795 0.98613 1.67417 1.05250 1.24463 1.16038 1.20058 0.94932 0.91253 0.96300 1.25287 0.98375 0.89940 0.99098 1.66576 1.10739 1.32355 1.08853 1.21489 0.95553 0.95254 0.99690 1.27891 1.08869 0.99666 1.10611 1.85926 1.24945 1.12606 1.34490 0.89776 0.85116 0.86668 0.87440 0.87252 0.86355 0.82640 0.82181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.68 11.44 55.56 0.64 -17.05 16 2 C 0.08 1.80 5.29 -17.31 -0.09 1.71 16 3 Si 0.91 16.35 29.57 -169.99 -5.03 11.32 16 4 H -0.26 -4.63 7.11 56.52 0.40 -4.23 16 5 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16 6 H -0.25 -4.41 7.11 56.52 0.40 -4.01 16 7 C -0.45 -10.33 7.00 -37.94 -0.27 -10.60 16 8 H 0.10 2.16 5.05 -31.25 -0.16 2.00 16 9 C 0.09 2.11 5.57 -104.67 -0.58 1.52 16 10 C -0.13 -3.19 8.47 -38.12 -0.32 -3.51 16 11 C -0.05 -1.17 5.87 -104.96 -0.62 -1.79 16 12 C -0.12 -2.34 9.80 -39.37 -0.39 -2.73 16 13 C -0.12 -1.98 9.91 -39.99 -0.40 -2.38 16 14 C -0.17 -2.85 9.90 -39.96 -0.40 -3.24 16 15 C -0.06 -1.17 9.99 -39.44 -0.39 -1.56 16 16 C 0.04 1.04 6.75 -82.94 -0.56 0.48 16 17 N -0.42 -10.58 10.17 -4.92 -0.05 -10.63 16 18 C 0.13 3.19 6.93 -80.73 -0.56 2.64 16 19 C 0.15 3.36 7.36 -14.45 -0.11 3.25 16 20 N -0.47 -10.49 10.49 -11.46 -0.12 -10.62 16 21 C 0.03 0.62 11.26 -19.37 -0.22 0.41 16 22 C -0.33 -5.62 11.37 29.31 0.33 -5.29 16 23 S 0.16 3.17 18.81 -107.50 -2.02 1.15 16 24 H 0.29 6.00 8.29 -40.82 -0.34 5.66 16 25 H 0.13 3.06 7.00 -52.49 -0.37 2.70 16 26 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 27 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 28 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 29 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 30 H 0.16 2.34 8.06 -52.49 -0.42 1.91 16 31 H 0.16 2.15 8.06 -52.48 -0.42 1.73 16 LS Contribution 285.95 15.07 4.31 4.31 Total: -1.00 -26.73 285.95 -9.03 -35.76 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -2.20 Total: 6.83 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -4.56 Total: -21.09 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.47 Total: -38.29 kcal Atomic # 14 Polarization: 16.35 SS G_CDS: -5.03 Total: 11.32 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -2.02 Total: 1.15 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -26.73 -9.03 -35.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242895522.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.618 kcal (2) G-P(sol) polarization free energy of solvation -26.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds