Wall clock time and date at job start Tue Mar 31 2020 05:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30522 * 1 3 3 Si 1.86792 * 120.00214 * 2 1 4 4 H 1.48507 * 109.47152 * 240.00346 * 3 2 1 5 5 H 1.48502 * 109.47129 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47402 * 120.00342 * 3 2 1 7 7 C 1.40433 * 119.99720 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99731 * 180.02562 * 7 2 1 9 9 C 1.40367 * 120.00437 * 359.97438 * 7 2 1 10 10 N 1.33187 * 126.67962 * 179.97438 * 9 7 2 11 11 C 1.34313 * 105.47860 * 179.97438 * 10 9 7 12 12 C 1.48378 * 126.20750 * 179.97438 * 11 10 9 13 13 C 1.39386 * 120.06171 * 180.02562 * 12 11 10 14 14 C 1.37874 * 119.93568 * 179.97438 * 13 12 11 15 15 C 1.38861 * 120.05901 * 0.28178 * 14 13 12 16 16 O 1.35836 * 119.93422 * 179.71896 * 15 14 13 17 17 C 1.42895 * 117.00058 * 179.97438 * 16 15 14 18 18 F 1.39906 * 109.47307 * 300.00145 * 17 16 15 19 19 F 1.39895 * 109.47078 * 60.00150 * 17 16 15 20 20 C 1.38865 * 120.12825 * 359.44538 * 15 14 13 21 21 C 1.37870 * 120.05853 * 0.54774 * 20 15 14 22 22 N 1.31310 * 107.58665 * 0.24356 * 11 10 9 23 23 O 1.21267 * 110.51988 * 359.57278 * 22 11 10 24 24 H 0.97001 * 119.99792 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.03238 * 0.02562 * 13 12 11 26 26 H 1.08002 * 119.96560 * 179.97438 * 14 13 12 27 27 H 1.08995 * 109.47356 * 180.02562 * 17 16 15 28 28 H 1.07997 * 119.96942 * 180.25790 * 20 15 14 29 29 H 1.08007 * 120.02789 * 179.74698 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6176 0.0000 4 1 3.0930 1.6963 -1.2126 5 1 1.2743 2.7464 0.0006 6 1 3.0931 1.6963 1.2124 7 6 2.0073 -1.2162 -0.0005 8 1 3.0873 -1.2162 -0.0001 9 6 1.3055 -2.4318 -0.0005 10 7 1.8328 -3.6549 -0.0015 11 6 0.7861 -4.4965 -0.0005 12 6 0.8532 -5.9788 -0.0015 13 6 -0.3204 -6.7309 -0.0008 14 6 -0.2550 -8.1081 -0.0023 15 6 0.9785 -8.7458 0.0014 16 8 1.0400 -10.1028 0.0057 17 6 2.3413 -10.6932 0.0088 18 9 3.0396 -10.2889 -1.1341 19 9 3.0373 -10.2818 1.1505 20 6 2.1493 -7.9991 -0.0050 21 6 2.0899 -6.6217 -0.0036 22 7 -0.3075 -3.7696 -0.0043 23 8 -0.0328 -2.5885 0.0010 24 1 -0.4850 0.8401 0.0004 25 1 -1.2799 -6.2353 0.0001 26 1 -1.1640 -8.6913 -0.0013 27 1 2.2475 -11.7791 0.0117 28 1 3.1072 -8.4978 -0.0063 29 1 3.0008 -6.0414 -0.0045 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001247386401.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:13 Heat of formation + Delta-G solvation = -72.729452 kcal Electronic energy + Delta-G solvation = -20787.043510 eV Core-core repulsion = 16927.635716 eV Total energy + Delta-G solvation = -3859.407795 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.060 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.49357 -47.48478 -43.05653 -39.83454 -37.42534 -34.17136 -33.66719 -31.13712 -30.85338 -29.25531 -26.56233 -26.26922 -23.17126 -22.80835 -21.33600 -20.69276 -19.01989 -18.41074 -18.05246 -17.83501 -16.04812 -15.86982 -15.76331 -15.43976 -14.69621 -14.68234 -14.44102 -14.05846 -13.79841 -13.71311 -13.43916 -13.25775 -12.89852 -12.65608 -12.05678 -11.92549 -11.66783 -11.47641 -11.38305 -10.79468 -10.56959 -10.17778 -10.11428 -9.82776 -9.02669 -8.84630 -8.68820 -7.70913 -7.12760 -5.07890 1.28550 1.55153 2.46089 2.78260 2.94068 2.98071 3.22082 3.31368 3.65108 3.70745 4.11821 4.32649 4.48915 4.80661 4.92764 4.99524 4.99754 5.29688 5.33840 5.64392 5.66610 6.05773 6.23664 6.35553 6.40953 6.65897 6.80506 6.98044 7.13825 7.31447 7.82984 8.02726 8.24553 8.40130 9.86238 10.25935 Molecular weight = 282.06amu Principal moments of inertia in cm(-1) A = 0.041866 B = 0.003408 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.646375 B = 8213.222054 C = 8707.366065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.070 3.930 3 Si 0.938 3.062 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.414 4.414 8 H 0.114 0.886 9 C 0.304 3.696 10 N -0.606 5.606 11 C 0.190 3.810 12 C -0.002 4.002 13 C -0.064 4.064 14 C -0.136 4.136 15 C 0.095 3.905 16 O -0.323 6.323 17 C 0.411 3.589 18 F -0.199 7.199 19 F -0.199 7.199 20 C -0.192 4.192 21 C -0.049 4.049 22 N -0.456 5.456 23 O 0.053 5.947 24 H 0.294 0.706 25 H 0.140 0.860 26 H 0.134 0.866 27 H 0.179 0.821 28 H 0.133 0.867 29 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.534 -14.425 0.022 14.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.155 4.155 3 Si 0.760 3.240 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.452 4.452 8 H 0.132 0.868 9 C 0.114 3.886 10 N -0.350 5.350 11 C -0.081 4.081 12 C -0.004 4.004 13 C -0.084 4.084 14 C -0.155 4.155 15 C 0.051 3.949 16 O -0.241 6.241 17 C 0.321 3.679 18 F -0.181 7.181 19 F -0.181 7.181 20 C -0.211 4.211 21 C -0.069 4.069 22 N -0.183 5.183 23 O 0.003 5.997 24 H 0.105 0.895 25 H 0.157 0.843 26 H 0.152 0.848 27 H 0.195 0.805 28 H 0.151 0.849 29 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.776 -14.964 0.015 15.069 hybrid contribution 0.688 1.040 0.004 1.247 sum 2.464 -13.924 0.019 14.140 Atomic orbital electron populations 1.69626 1.07779 1.31053 1.30542 1.26206 0.95153 1.02345 0.91806 0.85862 0.79634 0.78016 0.80447 1.18323 1.19815 1.18331 1.18555 0.95055 0.85414 1.46156 0.86843 1.24154 0.79774 0.93900 0.90757 1.72358 1.27662 0.98431 1.36524 1.23199 0.86938 0.94653 1.03269 1.17596 0.93328 0.87875 1.01630 1.21057 0.98683 0.92086 0.96556 1.20244 0.95177 0.93833 1.06229 1.18903 0.95122 0.80236 1.00592 1.86552 1.28462 1.20196 1.88846 1.23299 0.75432 0.97266 0.71909 1.93105 1.80130 1.92830 1.52040 1.93103 1.80229 1.92655 1.52106 1.21395 0.96977 0.95162 1.07568 1.21063 0.98143 0.92820 0.94831 1.74583 1.23869 0.91026 1.28837 1.85513 1.25803 1.17693 1.70705 0.89520 0.84268 0.84775 0.80499 0.84933 0.84131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.17 12.05 55.57 0.67 -18.50 15 2 C 0.07 1.67 5.50 -17.28 -0.10 1.58 15 3 Si 0.94 17.34 29.56 -169.99 -5.03 12.31 15 4 H -0.26 -4.70 7.11 56.52 0.40 -4.30 15 5 H -0.27 -4.87 7.11 56.52 0.40 -4.47 15 6 H -0.26 -4.70 7.11 56.52 0.40 -4.30 15 7 C -0.41 -10.81 9.48 -37.96 -0.36 -11.17 15 8 H 0.11 2.77 7.85 -52.49 -0.41 2.36 15 9 C 0.30 8.62 7.80 -16.33 -0.13 8.50 15 10 N -0.61 -16.64 11.29 -11.62 -0.13 -16.77 15 11 C 0.19 4.90 7.78 -156.50 -1.22 3.68 15 12 C 0.00 -0.05 5.88 -104.87 -0.62 -0.67 15 13 C -0.06 -1.15 9.68 -39.29 -0.38 -1.53 15 14 C -0.14 -2.07 9.97 -39.48 -0.39 -2.46 15 15 C 0.09 1.43 6.49 -39.12 -0.25 1.18 15 16 O -0.32 -3.95 10.42 -19.22 -0.20 -4.15 15 17 C 0.41 3.77 5.98 101.05 0.60 4.37 15 18 F -0.20 -2.21 15.56 2.25 0.04 -2.18 15 19 F -0.20 -2.21 15.59 2.25 0.04 -2.18 15 20 C -0.19 -3.10 8.24 -39.48 -0.33 -3.42 15 21 C -0.05 -0.92 9.69 -39.29 -0.38 -1.30 15 22 N -0.46 -12.43 11.83 31.47 0.37 -12.06 15 23 O 0.05 1.53 9.72 15.15 0.15 1.68 15 24 H 0.29 6.53 8.29 -40.82 -0.34 6.19 15 25 H 0.14 2.47 7.85 -52.49 -0.41 2.06 15 26 H 0.13 1.65 8.06 -52.49 -0.42 1.22 15 27 H 0.18 0.63 8.14 -51.93 -0.42 0.21 15 28 H 0.13 1.93 5.08 -52.49 -0.27 1.66 15 29 H 0.14 2.70 7.86 -52.48 -0.41 2.28 15 LS Contribution 276.96 15.07 4.17 4.17 Total: -1.00 -31.04 276.96 -4.95 -35.99 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -1.48 Total: 2.92 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -3.55 Total: -1.25 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: 0.91 Total: -47.32 kcal Atomic # 8 Polarization: -2.42 SS G_CDS: -0.05 Total: -2.47 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.07 Total: -4.35 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.03 Total: 12.31 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.04 -4.95 -35.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247386401.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.740 kcal (2) G-P(sol) polarization free energy of solvation -31.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds