Wall clock time and date at job start Tue Mar 31 2020 05:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99818 * 2 1 4 4 H 1.48505 * 109.47130 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.47071 * 120.00146 * 3 2 1 6 6 H 1.48497 * 109.47454 * 240.00190 * 3 2 1 7 7 C 1.37875 * 120.00495 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00447 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99994 * 359.97438 * 7 2 1 10 10 O 1.42900 * 112.94219 * 50.33034 * 9 7 2 11 11 C 1.53948 * 113.73901 * 278.74620 * 9 7 2 12 12 N 1.47819 * 86.03599 * 222.08274 * 11 9 7 13 13 C 1.34769 * 134.45879 * 204.64581 * 12 11 9 14 14 O 1.21565 * 120.00510 * 174.63449 * 13 12 11 15 15 C 1.47758 * 120.00055 * 354.63317 * 13 12 11 16 16 C 1.40014 * 120.56902 * 335.11997 * 15 13 12 17 17 C 1.38357 * 118.30514 * 179.71343 * 16 15 13 18 18 C 1.38350 * 119.33651 * 0.59872 * 17 16 15 19 19 N 1.31911 * 121.10812 * 359.65689 * 18 17 16 20 20 C 1.31825 * 121.86517 * 0.02562 * 19 18 17 21 21 Cl 1.73595 * 119.74134 * 179.97438 * 20 19 18 22 22 C 1.47583 * 91.04799 * 24.54558 * 12 11 9 23 23 H 0.96990 * 120.00537 * 359.97438 * 1 2 3 24 24 H 0.96698 * 114.00237 * 309.66850 * 10 9 7 25 25 H 1.09007 * 113.76973 * 336.34172 * 11 9 7 26 26 H 1.08995 * 113.77480 * 107.74576 * 11 9 7 27 27 H 1.08005 * 120.84824 * 359.96987 * 16 15 13 28 28 H 1.07999 * 120.32942 * 180.27494 * 17 16 15 29 29 H 1.08001 * 119.44113 * 179.68095 * 18 17 16 30 30 H 1.09006 * 113.76900 * 221.15134 * 22 12 11 31 31 H 1.09003 * 113.86682 * 89.77178 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1028 1.6964 1.2124 6 1 3.1028 1.6965 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 8 0.2448 -2.5614 -1.0131 11 6 0.7563 -2.9291 1.3924 12 7 1.1922 -4.2900 1.0143 13 6 0.8430 -5.5338 1.3982 14 8 1.3163 -6.5000 0.8323 15 6 -0.1151 -5.7231 2.5070 16 6 -0.2749 -4.7354 3.4865 17 6 -1.1894 -4.9589 4.5004 18 6 -1.9014 -6.1449 4.5217 19 7 -1.7273 -7.0612 3.5889 20 6 -0.8730 -6.8931 2.5991 21 17 -0.6875 -8.1359 1.4014 22 6 2.1610 -3.7401 0.0462 23 1 -0.4850 0.8399 0.0004 24 1 -0.3474 -1.7970 -1.0267 25 1 1.3276 -2.4973 2.2142 26 1 -0.3213 -2.8327 1.5250 27 1 0.2981 -3.8207 3.4492 28 1 -1.3420 -4.2171 5.2703 29 1 -2.6119 -6.3233 5.3153 30 1 2.2028 -4.2899 -0.8941 31 1 3.1465 -3.5466 0.4700 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320482544.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:31 Heat of formation + Delta-G solvation = -7.900842 kcal Electronic energy + Delta-G solvation = -19703.693636 eV Core-core repulsion = 16398.893701 eV Total energy + Delta-G solvation = -3304.799935 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 282.056 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.53510 -39.19988 -37.30642 -36.41016 -34.07722 -32.82061 -32.28662 -31.23473 -28.62209 -25.70490 -25.50360 -24.12372 -23.34491 -20.41137 -18.92121 -17.58887 -17.27082 -16.84093 -16.53603 -15.60381 -15.14753 -14.85499 -14.60012 -14.28859 -14.12988 -13.50049 -13.19755 -12.77777 -12.53464 -12.27579 -12.03660 -11.63269 -11.61286 -11.22127 -11.10738 -10.98498 -10.60721 -10.37115 -10.08073 -10.00601 -9.57657 -9.22168 -9.02050 -8.83300 -8.49713 -7.92671 -6.45834 -4.56798 0.57176 0.98619 1.91644 3.06670 3.11588 3.18169 3.19759 3.32012 3.75842 4.12914 4.33851 4.63764 4.67034 4.78005 4.82329 5.06198 5.21741 5.51248 5.73643 5.83453 5.91599 6.06756 6.24946 6.29704 6.34038 6.52480 6.57861 7.00189 7.53912 7.56131 7.74280 8.30982 8.46696 8.59334 9.14793 9.36023 10.60830 Molecular weight = 282.06amu Principal moments of inertia in cm(-1) A = 0.026646 B = 0.004967 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.557745 B = 5636.226360 C = 6245.131844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.907 3.093 4 H -0.285 1.285 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.539 4.539 8 H 0.072 0.928 9 C 0.240 3.760 10 O -0.571 6.571 11 C 0.072 3.928 12 N -0.625 5.625 13 C 0.569 3.431 14 O -0.535 6.535 15 C -0.154 4.154 16 C -0.032 4.032 17 C -0.178 4.178 18 C 0.129 3.871 19 N -0.486 5.486 20 C 0.216 3.784 21 Cl 0.000 7.000 22 C 0.115 3.885 23 H 0.274 0.726 24 H 0.392 0.608 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.154 0.846 28 H 0.148 0.852 29 H 0.168 0.832 30 H 0.074 0.926 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.689 -5.201 9.101 10.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.129 4.129 3 Si 0.734 3.266 4 H -0.210 1.210 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.577 4.577 8 H 0.090 0.910 9 C 0.199 3.801 10 O -0.382 6.382 11 C -0.051 4.051 12 N -0.358 5.358 13 C 0.357 3.643 14 O -0.414 6.414 15 C -0.160 4.160 16 C -0.058 4.058 17 C -0.198 4.198 18 C -0.028 4.028 19 N -0.197 5.197 20 C 0.051 3.949 21 Cl 0.029 6.971 22 C -0.006 4.006 23 H 0.084 0.916 24 H 0.247 0.753 25 H 0.102 0.898 26 H 0.089 0.911 27 H 0.171 0.829 28 H 0.166 0.834 29 H 0.185 0.815 30 H 0.092 0.908 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.832 -7.223 8.634 11.608 hybrid contribution 0.470 2.142 0.252 2.207 sum -2.361 -5.082 8.886 10.505 Atomic orbital electron populations 1.69385 1.06175 1.28375 1.49820 1.25063 0.95017 0.99869 0.92999 0.86393 0.79514 0.81621 0.79034 1.20997 1.19896 1.19804 1.21456 0.93923 0.89857 1.52458 0.91014 1.19823 0.85671 0.91249 0.83398 1.86079 1.47024 1.49860 1.55287 1.24483 1.00084 0.77454 1.03055 1.50118 1.40014 1.04313 1.41400 1.17459 0.81844 0.82521 0.82461 1.90790 1.56133 1.38820 1.55622 1.20772 1.00906 0.95159 0.99176 1.22112 0.94821 0.97626 0.91235 1.22205 0.97930 0.99422 1.00244 1.22853 0.96406 0.88636 0.94896 1.67136 1.17550 1.32628 1.02408 1.21789 0.92397 0.89334 0.91351 1.98441 1.95670 1.51534 1.51416 1.23490 0.93132 0.92586 0.91429 0.91567 0.75342 0.89763 0.91098 0.82873 0.83424 0.81511 0.90794 0.89305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.77 11.20 55.43 0.62 -21.14 16 2 C 0.07 1.75 5.39 -17.82 -0.10 1.65 16 3 Si 0.91 18.66 29.54 -169.99 -5.02 13.64 16 4 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.54 -12.84 8.61 -34.44 -0.30 -13.14 16 8 H 0.07 1.66 7.81 -52.48 -0.41 1.25 16 9 C 0.24 5.49 1.40 -90.85 -0.13 5.36 16 10 O -0.57 -14.26 13.48 -35.23 -0.48 -14.73 16 11 C 0.07 1.43 5.72 -2.83 -0.02 1.41 16 12 N -0.63 -12.71 3.58 -179.23 -0.64 -13.35 16 13 C 0.57 11.59 7.71 -12.37 -0.10 11.49 16 14 O -0.53 -12.03 15.29 5.31 0.08 -11.95 16 15 C -0.15 -2.67 5.83 -104.79 -0.61 -3.28 16 16 C -0.03 -0.44 8.95 -38.87 -0.35 -0.79 16 17 C -0.18 -1.93 10.10 -39.50 -0.40 -2.33 16 18 C 0.13 1.46 11.17 -17.48 -0.20 1.26 16 19 N -0.49 -7.28 10.33 -10.01 -0.10 -7.39 16 20 C 0.22 3.69 7.30 -17.00 -0.12 3.57 16 21 Cl 0.00 0.01 26.52 -51.86 -1.38 -1.37 16 22 C 0.12 2.40 8.23 -2.97 -0.02 2.37 16 23 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 24 H 0.39 9.85 6.60 45.56 0.30 10.15 16 25 H 0.08 1.54 7.73 -51.92 -0.40 1.14 16 26 H 0.07 1.43 7.87 -51.93 -0.41 1.02 16 27 H 0.15 2.03 5.69 -52.48 -0.30 1.74 16 28 H 0.15 1.08 8.06 -52.49 -0.42 0.65 16 29 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 31 H 0.09 1.66 8.09 -51.93 -0.42 1.24 16 LS Contribution 288.04 15.07 4.34 4.34 Total: -1.00 -28.15 288.04 -6.95 -35.10 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -2.04 Total: 9.28 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -2.33 Total: 7.57 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: -0.13 Total: -41.88 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.39 Total: -26.68 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.02 Total: 13.64 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -1.38 Total: -1.37 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.15 -6.95 -35.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320482544.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.201 kcal (2) G-P(sol) polarization free energy of solvation -28.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds