Wall clock time and date at job start Tue Mar 31 2020 05:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99818 * 2 1 4 4 H 1.48505 * 109.47130 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.47071 * 120.00146 * 3 2 1 6 6 H 1.48497 * 109.47454 * 240.00190 * 3 2 1 7 7 C 1.37875 * 120.00495 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00447 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99994 * 359.97438 * 7 2 1 10 10 O 1.42900 * 112.94219 * 50.33034 * 9 7 2 11 11 C 1.53948 * 113.73901 * 278.74620 * 9 7 2 12 12 N 1.47819 * 86.03599 * 222.08274 * 11 9 7 13 13 C 1.34769 * 134.45879 * 204.64581 * 12 11 9 14 14 O 1.21565 * 120.00510 * 174.63449 * 13 12 11 15 15 C 1.47758 * 120.00055 * 354.63317 * 13 12 11 16 16 C 1.40014 * 120.56902 * 335.11997 * 15 13 12 17 17 C 1.38357 * 118.30514 * 179.71343 * 16 15 13 18 18 C 1.38350 * 119.33651 * 0.59872 * 17 16 15 19 19 N 1.31911 * 121.10812 * 359.65689 * 18 17 16 20 20 C 1.31825 * 121.86517 * 0.02562 * 19 18 17 21 21 Cl 1.73595 * 119.74134 * 179.97438 * 20 19 18 22 22 C 1.47583 * 91.04799 * 24.54558 * 12 11 9 23 23 H 0.96990 * 120.00537 * 359.97438 * 1 2 3 24 24 H 0.96698 * 114.00237 * 309.66850 * 10 9 7 25 25 H 1.09007 * 113.76973 * 336.34172 * 11 9 7 26 26 H 1.08995 * 113.77480 * 107.74576 * 11 9 7 27 27 H 1.08005 * 120.84824 * 359.96987 * 16 15 13 28 28 H 1.07999 * 120.32942 * 180.27494 * 17 16 15 29 29 H 1.08001 * 119.44113 * 179.68095 * 18 17 16 30 30 H 1.09006 * 113.76900 * 221.15134 * 22 12 11 31 31 H 1.09003 * 113.86682 * 89.77178 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1028 1.6964 1.2124 6 1 3.1028 1.6965 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 8 0.2448 -2.5614 -1.0131 11 6 0.7563 -2.9291 1.3924 12 7 1.1922 -4.2900 1.0143 13 6 0.8430 -5.5338 1.3982 14 8 1.3163 -6.5000 0.8323 15 6 -0.1151 -5.7231 2.5070 16 6 -0.2749 -4.7354 3.4865 17 6 -1.1894 -4.9589 4.5004 18 6 -1.9014 -6.1449 4.5217 19 7 -1.7273 -7.0612 3.5889 20 6 -0.8730 -6.8931 2.5991 21 17 -0.6875 -8.1359 1.4014 22 6 2.1610 -3.7401 0.0462 23 1 -0.4850 0.8399 0.0004 24 1 -0.3474 -1.7970 -1.0267 25 1 1.3276 -2.4973 2.2142 26 1 -0.3213 -2.8327 1.5250 27 1 0.2981 -3.8207 3.4492 28 1 -1.3420 -4.2171 5.2703 29 1 -2.6119 -6.3233 5.3153 30 1 2.2028 -4.2899 -0.8941 31 1 3.1465 -3.5466 0.4700 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320482544.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:31 Heat of formation + Delta-G solvation = -28.217408 kcal Electronic energy + Delta-G solvation = -19704.574629 eV Core-core repulsion = 16398.893701 eV Total energy + Delta-G solvation = -3305.680927 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 282.056 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.80560 -40.65558 -38.92156 -37.66715 -35.85891 -34.14714 -33.97760 -32.33980 -30.25596 -27.36633 -27.13009 -25.33482 -24.48235 -22.01300 -20.45444 -19.32879 -18.44965 -18.20951 -17.85769 -17.20250 -16.79257 -16.33667 -15.93654 -15.62602 -15.50256 -14.95285 -14.67610 -14.16375 -14.08270 -13.79713 -13.43574 -13.38461 -12.91128 -12.78821 -12.74621 -12.34318 -12.24891 -12.20296 -11.45749 -11.15098 -11.11078 -10.74641 -10.60358 -10.25211 -10.11504 -9.56850 -8.24854 -6.41937 -0.55645 -0.06791 0.71992 1.50010 1.53083 1.59289 1.70061 1.80435 2.42415 2.57354 2.97405 3.16473 3.44868 3.62510 3.75062 3.81724 4.03754 4.17332 4.29076 4.47671 4.60372 4.72044 4.77690 4.87810 4.92757 4.93745 5.22726 5.37746 5.74069 5.93952 6.49565 6.63872 6.73305 7.02399 7.31602 7.44869 8.80970 Molecular weight = 282.06amu Principal moments of inertia in cm(-1) A = 0.026646 B = 0.004967 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.557745 B = 5636.226360 C = 6245.131844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.037 3.963 3 Si 0.966 3.034 4 H -0.284 1.284 5 H -0.265 1.265 6 H -0.278 1.278 7 C -0.555 4.555 8 H 0.074 0.926 9 C 0.218 3.782 10 O -0.588 6.588 11 C 0.092 3.908 12 N -0.628 5.628 13 C 0.564 3.436 14 O -0.567 6.567 15 C -0.181 4.181 16 C -0.037 4.037 17 C -0.155 4.155 18 C 0.139 3.861 19 N -0.502 5.502 20 C 0.199 3.801 21 Cl -0.022 7.022 22 C 0.115 3.885 23 H 0.276 0.724 24 H 0.387 0.613 25 H 0.105 0.895 26 H 0.068 0.932 27 H 0.159 0.841 28 H 0.196 0.804 29 H 0.216 0.784 30 H 0.058 0.942 31 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.245 -3.970 11.764 12.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.164 4.164 3 Si 0.791 3.209 4 H -0.210 1.210 5 H -0.190 1.190 6 H -0.204 1.204 7 C -0.593 4.593 8 H 0.092 0.908 9 C 0.177 3.823 10 O -0.400 6.400 11 C -0.030 4.030 12 N -0.360 5.360 13 C 0.354 3.646 14 O -0.448 6.448 15 C -0.188 4.188 16 C -0.063 4.063 17 C -0.174 4.174 18 C -0.018 4.018 19 N -0.213 5.213 20 C 0.034 3.966 21 Cl 0.007 6.993 22 C -0.007 4.007 23 H 0.085 0.915 24 H 0.241 0.759 25 H 0.122 0.878 26 H 0.086 0.914 27 H 0.177 0.823 28 H 0.213 0.787 29 H 0.233 0.767 30 H 0.077 0.923 31 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.385 -5.996 11.307 13.239 hybrid contribution 0.575 1.770 -0.498 1.927 sum -2.810 -4.226 10.809 11.941 Atomic orbital electron populations 1.69451 1.07066 1.28985 1.50052 1.25693 0.95694 1.02398 0.92653 0.85481 0.78290 0.78207 0.78890 1.20970 1.18993 1.20365 1.21670 0.94174 0.90551 1.52904 0.90831 1.20145 0.85873 0.91824 0.84500 1.86070 1.47545 1.49705 1.56645 1.24281 1.00059 0.76868 1.01824 1.50114 1.39952 1.04673 1.41308 1.17991 0.81919 0.81841 0.82893 1.90757 1.57405 1.39597 1.57038 1.20601 1.01716 0.96824 0.99623 1.22305 0.95735 0.96954 0.91304 1.22719 0.95273 0.99885 0.99509 1.23775 0.96032 0.87696 0.94271 1.67193 1.17291 1.34105 1.02718 1.21779 0.93685 0.89014 0.92093 1.98421 1.95889 1.52390 1.52591 1.23513 0.94064 0.91731 0.91429 0.91458 0.75861 0.87752 0.91382 0.82316 0.78683 0.76718 0.92326 0.87231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -43.87 11.20 21.45 0.24 -43.63 16 2 C 0.04 1.71 5.39 84.65 0.46 2.16 16 3 Si 0.97 37.39 29.54 68.60 2.03 39.42 16 4 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 5 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 6 H -0.28 -10.93 7.11 99.48 0.71 -10.23 16 7 C -0.56 -26.15 8.61 25.60 0.22 -25.93 16 8 H 0.07 3.35 7.81 -2.91 -0.02 3.33 16 9 C 0.22 9.95 1.40 -10.88 -0.02 9.94 16 10 O -0.59 -29.96 13.48 -148.98 -2.01 -31.97 16 11 C 0.09 3.57 5.72 86.44 0.49 4.07 16 12 N -0.63 -25.56 3.58 -843.07 -3.02 -28.58 16 13 C 0.56 23.26 7.71 86.76 0.67 23.93 16 14 O -0.57 -26.35 15.29 -3.92 -0.06 -26.41 16 15 C -0.18 -6.18 5.83 -19.97 -0.12 -6.30 16 16 C -0.04 -0.94 8.95 22.73 0.20 -0.74 16 17 C -0.15 -2.63 10.10 22.32 0.23 -2.40 16 18 C 0.14 2.53 11.17 84.71 0.95 3.48 16 19 N -0.50 -13.98 10.33 -185.60 -1.92 -15.89 16 20 C 0.20 6.69 7.30 85.05 0.62 7.31 16 21 Cl -0.02 -0.78 26.52 -2.72 -0.07 -0.85 16 22 C 0.11 4.81 8.23 86.48 0.71 5.52 16 23 H 0.28 12.60 8.31 -92.72 -0.77 11.83 16 24 H 0.39 19.88 6.60 -74.06 -0.49 19.39 16 25 H 0.10 3.62 7.73 -2.38 -0.02 3.60 16 26 H 0.07 2.68 7.87 -2.39 -0.02 2.66 16 27 H 0.16 3.79 5.69 -2.91 -0.02 3.78 16 28 H 0.20 1.51 8.06 -2.91 -0.02 1.48 16 29 H 0.22 1.77 8.06 -2.91 -0.02 1.75 16 30 H 0.06 2.60 8.14 -2.38 -0.02 2.58 16 31 H 0.11 4.07 8.09 -2.39 -0.02 4.05 16 Total: -1.00 -62.31 288.04 0.30 -62.00 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: 0.70 Total: 24.87 kcal Atomic # 6 Polarization: 16.63 SS G_CDS: 4.42 Total: 21.04 kcal Atomic # 7 Polarization: -83.41 SS G_CDS: -4.70 Total: -88.11 kcal Atomic # 8 Polarization: -56.31 SS G_CDS: -2.07 Total: -58.38 kcal Atomic # 14 Polarization: 37.39 SS G_CDS: 2.03 Total: 39.42 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -0.07 Total: -0.85 kcal Total: -62.31 0.30 -62.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320482544.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.785 kcal (2) G-P(sol) polarization free energy of solvation -62.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds