Wall clock time and date at job start Tue Mar 31 2020 05:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.46845 * 2 1 4 4 C 1.50704 * 109.47486 * 240.00163 * 2 1 3 5 5 H 1.07990 * 120.00140 * 239.99775 * 4 2 1 6 6 C 1.37878 * 119.99653 * 59.99367 * 4 2 1 7 7 N 1.31517 * 120.00361 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99928 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47131 * 60.00116 * 8 6 4 10 10 H 1.48501 * 109.47085 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47154 * 300.00461 * 8 6 4 12 12 N 1.46500 * 109.47582 * 119.99911 * 2 1 3 13 13 C 1.40349 * 120.00269 * 275.00667 * 12 2 1 14 14 N 1.34076 * 125.86184 * 0.02562 * 13 12 2 15 15 C 1.32480 * 109.24134 * 179.97438 * 14 13 12 16 16 S 1.76276 * 141.82648 * 180.02562 * 15 14 13 17 17 C 1.75783 * 90.69496 * 179.97438 * 16 15 14 18 18 C 1.30934 * 109.79832 * 359.97438 * 17 16 15 19 19 N 1.35059 * 108.95566 * 0.02562 * 15 14 13 20 20 C 1.34900 * 125.86668 * 179.97438 * 13 12 2 21 21 N 1.48748 * 126.50987 * 0.02562 * 20 13 12 22 22 O 1.21800 * 119.99798 * 270.00208 * 21 20 13 23 23 O 1.21802 * 120.00486 * 89.99403 * 21 20 13 24 24 H 1.08992 * 109.47283 * 60.00289 * 1 2 3 25 25 H 1.09004 * 109.46845 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47236 * 299.99224 * 1 2 3 27 27 H 0.96999 * 120.00608 * 180.02562 * 7 6 4 28 28 H 0.97005 * 119.99532 * 94.99907 * 12 2 1 29 29 H 1.07996 * 125.09969 * 180.26419 * 17 16 15 30 30 H 1.07998 * 121.83970 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.8259 -2.5201 -4.0078 10 1 1.8268 -0.4197 -5.2204 11 1 3.8063 -1.1207 -4.0082 12 7 2.0184 -0.6906 1.1961 13 6 2.1524 0.0095 2.4052 14 7 1.8685 1.3056 2.5979 15 6 2.1143 1.6233 3.8603 16 16 2.0561 2.9799 4.9845 17 6 2.6562 1.9576 6.2825 18 6 2.8529 0.7428 5.8355 19 7 2.5655 0.5278 4.5086 20 6 2.5880 -0.5063 3.5731 21 7 3.0126 -1.9109 3.8166 22 8 2.1956 -2.7409 4.1732 23 8 4.1771 -2.2312 3.6593 24 1 -0.3633 0.5137 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8901 27 1 0.7086 1.1614 -3.4844 28 1 2.2491 -1.6318 1.1525 29 1 2.8315 2.2818 7.2977 30 1 3.2221 -0.0463 6.4737 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060349479.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:15 Heat of formation + Delta-G solvation = 112.559613 kcal Electronic energy + Delta-G solvation = -19586.473257 eV Core-core repulsion = 16321.233337 eV Total energy + Delta-G solvation = -3265.239920 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 282.057 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.96929 -41.61024 -37.46433 -36.38603 -35.32169 -32.66090 -31.32043 -29.95784 -27.97174 -25.81426 -25.25985 -24.22617 -21.93089 -21.31435 -20.15538 -19.28257 -18.72589 -17.68680 -17.43413 -16.80402 -16.31531 -15.78658 -15.52660 -14.81111 -14.60889 -13.69678 -13.59116 -12.93330 -12.52801 -11.83916 -11.67974 -11.57956 -11.32343 -11.18907 -11.07571 -11.04441 -10.87178 -10.79557 -10.49848 -10.28671 -10.10982 -9.80426 -9.12291 -8.56419 -8.12209 -7.36805 -6.19104 -4.28625 0.36264 0.58122 0.63528 1.11887 1.39715 1.77852 2.41773 2.87633 3.24732 3.29085 3.31440 3.74405 4.13986 4.31356 4.62796 4.86278 4.96707 5.13877 5.46171 5.75447 6.07689 6.54449 6.70674 6.90306 7.00866 7.18897 7.26953 7.57654 7.73334 7.75437 7.93595 8.09618 8.39444 8.77191 9.38126 10.86874 Molecular weight = 282.06amu Principal moments of inertia in cm(-1) A = 0.021044 B = 0.005167 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.252928 B = 5417.434004 C = 6365.891687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.275 3.725 3 H 0.052 0.948 4 C -0.538 4.538 5 H 0.061 0.939 6 C 0.070 3.930 7 N -0.883 5.883 8 Si 0.905 3.095 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.682 5.682 13 C 0.441 3.559 14 N -0.462 5.462 15 C 0.212 3.788 16 S 0.229 5.771 17 C -0.237 4.237 18 C 0.060 3.940 19 N -0.388 5.388 20 C -0.116 4.116 21 N 0.061 4.939 22 O -0.133 6.133 23 O -0.131 6.131 24 H 0.094 0.906 25 H 0.028 0.972 26 H 0.015 0.985 27 H 0.266 0.734 28 H 0.402 0.598 29 H 0.202 0.798 30 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.321 3.662 17.473 18.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.174 3.826 3 H 0.070 0.930 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.134 4.134 7 N -0.520 5.520 8 Si 0.732 3.268 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.201 1.201 12 N -0.311 5.311 13 C 0.203 3.797 14 N -0.195 5.195 15 C -0.155 4.155 16 S 0.477 5.523 17 C -0.375 4.375 18 C -0.070 4.070 19 N -0.075 5.075 20 C -0.310 4.310 21 N 0.593 4.407 22 O -0.356 6.356 23 O -0.354 6.354 24 H 0.112 0.888 25 H 0.047 0.953 26 H 0.034 0.966 27 H 0.076 0.924 28 H 0.238 0.762 29 H 0.219 0.781 30 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 1.299 6.361 16.277 17.524 hybrid contribution 1.216 -3.192 0.059 3.417 sum 2.516 3.168 16.336 16.830 Atomic orbital electron populations 1.22145 0.98200 0.99426 1.00995 1.18908 0.91110 0.93752 0.78840 0.92980 1.21128 1.32857 1.13527 0.90098 0.92039 1.24847 0.94630 0.94919 0.99004 1.69878 1.35609 1.22315 1.24199 0.86451 0.79258 0.79641 0.81477 1.20040 1.21003 1.20064 1.45464 1.68528 1.11662 1.05460 1.17135 0.89816 0.87836 0.84940 1.70842 1.27534 1.10567 1.10596 1.26377 1.02769 0.92350 0.94045 1.84914 1.70823 1.02637 0.93912 1.25011 1.11510 0.95520 1.05508 1.20383 1.03825 0.99925 0.82878 1.42773 1.48655 1.08395 1.07688 1.19975 1.38790 0.80900 0.91303 1.42377 0.99917 1.00872 0.97529 1.94543 1.49333 1.45388 1.46286 1.94551 1.02721 1.84916 1.53237 0.88782 0.95321 0.96583 0.92374 0.76185 0.78090 0.80412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.28 37.16 0.34 -3.33 16 2 C 0.27 6.98 2.74 -69.08 -0.19 6.79 16 3 H 0.05 1.47 7.84 -51.93 -0.41 1.06 16 4 C -0.54 -14.45 8.73 -34.44 -0.30 -14.75 16 5 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 6 C 0.07 1.87 5.30 -17.82 -0.09 1.78 16 7 N -0.88 -24.49 11.32 55.43 0.63 -23.87 16 8 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 9 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 N -0.68 -15.37 5.29 -55.38 -0.29 -15.66 16 13 C 0.44 9.32 7.69 -153.76 -1.18 8.14 16 14 N -0.46 -9.48 10.80 -12.53 -0.14 -9.62 16 15 C 0.21 3.47 8.92 -88.68 -0.79 2.68 16 16 S 0.23 2.33 23.37 -107.50 -2.51 -0.18 16 17 C -0.24 -1.80 11.11 29.03 0.32 -1.48 16 18 C 0.06 0.64 11.26 -16.73 -0.19 0.45 16 19 N -0.39 -6.11 3.20 -59.97 -0.19 -6.30 16 20 C -0.12 -2.20 8.06 -139.84 -1.13 -3.32 16 21 N 0.06 1.12 4.48 33.78 0.15 1.27 16 22 O -0.13 -2.44 19.26 -29.46 -0.57 -3.00 16 23 O -0.13 -2.43 19.26 -29.46 -0.57 -3.00 16 24 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 25 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.40 8.66 8.67 -40.82 -0.35 8.30 16 29 H 0.20 0.64 8.06 -52.49 -0.42 0.22 16 30 H 0.18 1.47 8.06 -52.49 -0.42 1.04 16 LS Contribution 291.95 15.07 4.40 4.40 Total: -1.00 -30.53 291.95 -9.62 -40.15 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -2.31 Total: 3.05 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -3.21 Total: -3.05 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: 0.16 Total: -54.17 kcal Atomic # 8 Polarization: -4.86 SS G_CDS: -1.14 Total: -6.00 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -2.51 Total: -0.18 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.53 -9.62 -40.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060349479.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.712 kcal (2) G-P(sol) polarization free energy of solvation -30.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds