Wall clock time and date at job start Tue Mar 31 2020 06:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38130 * 120.02777 * 2 1 4 4 C 1.38239 * 120.09207 * 180.25552 * 3 2 1 5 5 C 1.38433 * 120.13440 * 359.74057 * 4 3 2 6 6 Cl 1.73597 * 119.97637 * 180.02562 * 5 4 3 7 7 C 1.38194 * 120.04584 * 0.02562 * 5 4 3 8 8 C 1.38903 * 120.02514 * 179.76333 * 2 1 3 9 9 N 1.39668 * 120.06671 * 0.02562 * 8 2 1 10 10 C 1.46506 * 120.00181 * 179.72324 * 9 8 2 11 11 C 1.50703 * 109.47289 * 180.02562 * 10 9 8 12 12 O 1.21279 * 119.99926 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99773 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99642 * 180.02562 * 13 11 10 15 15 C 1.50706 * 109.47106 * 180.02562 * 14 13 11 16 16 H 1.07999 * 119.99515 * 359.97438 * 15 14 13 17 17 C 1.37870 * 120.00176 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00145 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00043 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47011 * 90.00027 * 19 17 15 21 21 H 1.48498 * 109.47118 * 209.99885 * 19 17 15 22 22 H 1.48494 * 109.47201 * 330.00053 * 19 17 15 23 23 H 1.09001 * 109.47042 * 270.23563 * 1 2 3 24 24 H 1.09001 * 109.46657 * 30.23623 * 1 2 3 25 25 H 1.09003 * 109.46491 * 150.23464 * 1 2 3 26 26 H 1.08004 * 119.95547 * 359.97438 * 3 2 1 27 27 H 1.07999 * 119.93719 * 179.71718 * 4 3 2 28 28 H 1.08000 * 120.04278 * 179.97438 * 7 5 4 29 29 H 0.97001 * 120.00568 * 359.72237 * 9 8 2 30 30 H 1.09001 * 109.47060 * 300.00571 * 10 9 8 31 31 H 1.09004 * 109.47073 * 60.00060 * 10 9 8 32 32 H 0.96998 * 120.00166 * 0.02562 * 13 11 10 33 33 H 1.08998 * 109.47245 * 299.99628 * 14 13 11 34 34 H 1.09001 * 109.47464 * 60.00642 * 14 13 11 35 35 H 0.96999 * 120.00284 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1959 0.0000 4 6 3.5806 1.1975 -0.0053 5 6 4.2770 0.0010 -0.0053 6 17 6.0129 0.0078 -0.0113 7 6 3.5911 -1.1987 -0.0004 8 6 2.2021 -1.2026 0.0050 9 7 1.5057 -2.4133 0.0094 10 6 2.2402 -3.6809 0.0085 11 6 1.2627 -4.8279 0.0133 12 8 0.0700 -4.6082 0.0167 13 7 1.7140 -6.0979 0.0129 14 6 0.7638 -7.2128 0.0170 15 6 1.5194 -8.5168 0.0162 16 1 2.5994 -8.5150 0.0125 17 6 0.8320 -9.7119 0.0201 18 7 -0.4831 -9.7140 0.0241 19 14 1.7685 -11.3281 0.0184 20 1 2.0220 -11.7548 1.4180 21 1 0.9650 -12.3651 -0.6774 22 1 3.0631 -11.1493 -0.6867 23 1 -0.3633 0.0042 1.0277 24 1 -0.3633 0.8879 -0.5175 25 1 -0.3632 -0.8921 -0.5102 26 1 1.6580 2.1311 -0.0004 27 1 4.1185 2.1340 -0.0099 28 1 4.1344 -2.1321 -0.0008 29 1 0.5357 -2.4149 0.0131 30 1 2.8636 -3.7390 -0.8837 31 1 2.8703 -3.7363 0.8963 32 1 2.6679 -6.2736 0.0099 33 1 0.1401 -7.1554 0.9090 34 1 0.1341 -7.1569 -0.8710 35 1 -0.9668 -10.5548 0.0265 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020033163.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:40 Heat of formation + Delta-G solvation = -30.029626 kcal Electronic energy + Delta-G solvation = -18686.555714 eV Core-core repulsion = 15516.629298 eV Total energy + Delta-G solvation = -3169.926416 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.01194 -38.92438 -36.75771 -35.26116 -34.30259 -32.68619 -32.43310 -30.18633 -28.09467 -26.86856 -26.00258 -22.92114 -21.84235 -21.42415 -19.90104 -18.15683 -17.04562 -16.40914 -15.73690 -15.44965 -15.42852 -15.12050 -14.51238 -14.27572 -14.22534 -13.70588 -13.56289 -13.17480 -12.94717 -12.76425 -12.53833 -12.05054 -11.87334 -11.56812 -11.40140 -11.38572 -11.07071 -11.00888 -10.94671 -10.39814 -10.16004 -9.49801 -9.34581 -8.83628 -8.78217 -8.06819 -7.51065 -6.24147 -4.31836 1.07907 1.39154 2.01920 3.08910 3.18904 3.20062 3.26933 3.29288 3.57981 3.99084 4.29757 4.64233 4.81647 4.97980 5.12341 5.12642 5.17350 5.31963 5.36491 5.40772 5.49408 5.53157 5.60036 5.90028 6.02948 6.19836 6.33417 6.56339 7.07358 7.18951 7.24418 7.39386 7.55212 7.67597 7.87227 8.43190 8.63648 8.88296 9.34921 10.85983 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.024623 B = 0.003057 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.867405 B = 9157.887694 C =10269.002005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.158 4.158 3 C -0.061 4.061 4 C -0.174 4.174 5 C 0.012 3.988 6 Cl -0.078 7.078 7 C -0.194 4.194 8 C 0.237 3.763 9 N -0.725 5.725 10 C 0.099 3.901 11 C 0.494 3.506 12 O -0.553 6.553 13 N -0.704 5.704 14 C 0.249 3.751 15 C -0.546 4.546 16 H 0.064 0.936 17 C 0.064 3.936 18 N -0.885 5.885 19 Si 0.905 3.095 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.272 1.272 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.129 0.871 27 H 0.127 0.873 28 H 0.132 0.868 29 H 0.414 0.586 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.394 0.606 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.494 20.336 -0.048 22.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.163 4.163 3 C -0.080 4.080 4 C -0.195 4.195 5 C -0.015 4.015 6 Cl -0.049 7.049 7 C -0.217 4.217 8 C 0.131 3.869 9 N -0.357 5.357 10 C -0.029 4.029 11 C 0.277 3.723 12 O -0.433 6.433 13 N -0.352 5.352 14 C 0.129 3.871 15 C -0.584 4.584 16 H 0.082 0.918 17 C -0.140 4.140 18 N -0.522 5.522 19 Si 0.732 3.268 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.147 0.853 27 H 0.145 0.855 28 H 0.150 0.850 29 H 0.255 0.745 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.227 0.773 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.699 20.104 -0.052 21.527 hybrid contribution 0.789 -1.133 0.008 1.380 sum 8.488 18.971 -0.044 20.783 Atomic orbital electron populations 1.20644 0.90822 1.02786 1.02363 1.19479 0.96292 0.91483 1.09044 1.20689 0.93041 0.97045 0.97190 1.20717 0.94076 0.96479 1.08201 1.20558 0.83779 0.94658 1.02547 1.98361 1.10726 1.98975 1.96878 1.20445 0.92175 0.97577 1.11537 1.17443 0.90445 0.85805 0.93197 1.44556 1.09480 1.01178 1.80521 1.21182 0.94785 0.83702 1.03269 1.20295 0.89318 0.84674 0.77981 1.90654 1.16630 1.84594 1.51428 1.46418 1.11502 1.05837 1.71487 1.19168 0.88265 0.81747 0.97923 1.21204 0.93320 0.90334 1.53588 0.91769 1.24952 0.94935 0.99532 0.94551 1.69965 1.06197 1.27406 1.48643 0.86391 0.79633 0.82478 0.78288 1.20403 1.20958 1.19679 0.91262 0.91334 0.91639 0.85320 0.85547 0.84971 0.74480 0.89421 0.89397 0.77334 0.95337 0.95328 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 9.57 36.01 0.34 -0.70 16 2 C -0.16 -1.73 5.90 -104.41 -0.62 -2.35 16 3 C -0.06 -0.58 9.69 -39.62 -0.38 -0.97 16 4 C -0.17 -1.73 9.83 -39.51 -0.39 -2.12 16 5 C 0.01 0.13 6.32 -39.53 -0.25 -0.12 16 6 Cl -0.08 -0.81 28.95 -51.86 -1.50 -2.31 16 7 C -0.19 -2.26 9.09 -39.35 -0.36 -2.62 16 8 C 0.24 2.91 6.63 -83.79 -0.56 2.35 16 9 N -0.72 -9.65 5.60 -59.80 -0.34 -9.99 16 10 C 0.10 1.30 5.39 -5.19 -0.03 1.28 16 11 C 0.49 9.04 7.90 -10.98 -0.09 8.95 16 12 O -0.55 -12.25 15.67 5.56 0.09 -12.17 16 13 N -0.70 -13.80 5.55 -61.47 -0.34 -14.14 16 14 C 0.25 6.35 5.43 -5.19 -0.03 6.32 16 15 C -0.55 -14.36 9.28 -34.44 -0.32 -14.68 16 16 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.88 -25.53 13.29 55.43 0.74 -24.80 16 19 Si 0.91 20.41 29.54 -169.99 -5.02 15.39 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 23 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 25 H 0.06 0.68 6.55 -51.93 -0.34 0.34 16 26 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 27 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 28 H 0.13 1.42 6.73 -52.49 -0.35 1.07 16 29 H 0.41 5.93 5.43 -40.82 -0.22 5.71 16 30 H 0.09 1.00 7.95 -51.93 -0.41 0.59 16 31 H 0.09 1.00 7.95 -51.93 -0.41 0.59 16 32 H 0.39 6.47 8.32 -40.82 -0.34 6.13 16 33 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 317.87 15.07 4.79 4.79 Total: -1.00 -30.42 317.87 -8.50 -38.92 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -4.15 Total: 7.32 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -2.77 Total: -3.01 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: 0.06 Total: -48.93 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.09 Total: -12.17 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.50 Total: -2.31 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.42 -8.50 -38.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020033163.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.889 kcal (2) G-P(sol) polarization free energy of solvation -30.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds