Wall clock time and date at job start Tue Mar 31 2020 06:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38280 * 119.93094 * 2 1 4 4 C 1.38089 * 120.08821 * 180.25782 * 3 2 1 5 5 C 1.38942 * 119.94872 * 359.49039 * 4 3 2 6 6 N 1.39669 * 120.07113 * 180.23638 * 5 4 3 7 7 C 1.46498 * 120.00245 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.47448 * 179.97438 * 7 6 5 9 9 O 1.21290 * 119.99703 * 359.97438 * 8 7 6 10 10 N 1.34769 * 120.00343 * 180.02562 * 8 7 6 11 11 C 1.46499 * 120.00172 * 179.97438 * 10 8 7 12 12 C 1.50700 * 109.47545 * 179.97438 * 11 10 8 13 13 H 1.08004 * 119.99654 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00338 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00140 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00037 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47013 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47025 * 119.99588 * 16 14 12 19 19 H 1.48497 * 109.47060 * 239.99750 * 16 14 12 20 20 C 1.38870 * 119.86379 * 0.25774 * 5 4 3 21 21 C 1.38238 * 119.91164 * 359.97438 * 20 5 4 22 22 Cl 1.73598 * 119.97497 * 180.02562 * 21 20 5 23 23 H 1.08996 * 109.47224 * 270.25205 * 1 2 3 24 24 H 1.09004 * 109.47021 * 30.25024 * 1 2 3 25 25 H 1.08993 * 109.47205 * 150.25050 * 1 2 3 26 26 H 1.08002 * 119.95991 * 0.02562 * 3 2 1 27 27 H 1.08002 * 120.03036 * 179.77437 * 4 3 2 28 28 H 0.97002 * 119.99660 * 359.97438 * 6 5 4 29 29 H 1.09004 * 109.46786 * 299.99174 * 7 6 5 30 30 H 1.08998 * 109.47632 * 59.99445 * 7 6 5 31 31 H 0.96996 * 120.00308 * 359.97438 * 10 8 7 32 32 H 1.09001 * 109.47202 * 300.00149 * 11 10 8 33 33 H 1.09006 * 109.46837 * 59.99662 * 11 10 8 34 34 H 0.96991 * 120.00115 * 180.02562 * 15 14 12 35 35 H 1.08003 * 120.04544 * 179.97438 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1971 1.1984 0.0000 4 6 3.5779 1.2022 -0.0054 5 6 4.2749 0.0002 -0.0001 6 7 5.6716 0.0011 -0.0005 7 6 6.4049 -1.2671 0.0045 8 6 7.8864 -0.9908 0.0023 9 8 8.2899 0.1530 -0.0035 10 7 8.7629 -2.0146 0.0056 11 6 10.2030 -1.7459 0.0029 12 6 10.9575 -3.0505 0.0081 13 1 10.4181 -3.9862 0.0135 14 6 12.3362 -3.0496 0.0072 15 7 12.9931 -1.9102 0.0023 16 14 13.2713 -4.6667 0.0145 17 1 12.3070 -5.7960 0.0200 18 1 14.1242 -4.7507 -1.1982 19 1 14.1259 -4.7388 1.2268 20 6 3.5799 -1.2021 0.0052 21 6 2.1976 -1.1993 0.0057 22 17 1.3271 -2.7012 0.0129 23 1 -0.3633 0.0045 1.0276 24 1 -0.3633 0.8878 -0.5177 25 1 -0.3633 -0.8922 -0.5099 26 1 1.6553 2.1327 0.0004 27 1 4.1158 2.1387 -0.0091 28 1 6.1560 0.8415 -0.0049 29 1 6.1423 -1.8351 0.8970 30 1 6.1417 -1.8426 -0.8829 31 1 8.4402 -2.9293 0.0098 32 1 10.4650 -1.1779 -0.8898 33 1 10.4669 -1.1704 0.8902 34 1 13.9630 -1.9096 0.0013 35 1 4.1187 -2.1381 0.0089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020039153.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:22 Heat of formation + Delta-G solvation = -30.853604 kcal Electronic energy + Delta-G solvation = -18494.050214 eV Core-core repulsion = 15324.088067 eV Total energy + Delta-G solvation = -3169.962147 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.90565 -38.95075 -36.74821 -35.55390 -34.32838 -32.47877 -31.72154 -30.87127 -28.59523 -26.82537 -25.12367 -23.15684 -22.35161 -21.16524 -19.92342 -18.15198 -16.98581 -16.32367 -15.54584 -15.49649 -15.42528 -15.21820 -14.57426 -14.30086 -14.25232 -13.80212 -13.62558 -13.40665 -12.70552 -12.54465 -12.38647 -12.05474 -11.95099 -11.91288 -11.59369 -11.29038 -11.03596 -10.96934 -10.92921 -10.39841 -9.95312 -9.47945 -9.34032 -8.93350 -8.83940 -8.06471 -7.47427 -6.24228 -4.31759 1.10396 1.35400 2.01100 3.09462 3.19257 3.19462 3.27181 3.30079 3.58596 3.99571 4.29801 4.63803 4.81963 4.97579 5.12339 5.13423 5.14865 5.32097 5.37009 5.39827 5.47122 5.54243 5.58346 5.83694 6.02537 6.14731 6.36039 6.55484 7.08154 7.19479 7.24933 7.39555 7.55615 7.68470 7.87313 8.43587 8.64093 8.88776 9.35017 10.85983 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.031873 B = 0.002793 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.272245 B =10022.915862 C =10875.438558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.146 4.146 3 C -0.058 4.058 4 C -0.188 4.188 5 C 0.233 3.767 6 N -0.726 5.726 7 C 0.100 3.900 8 C 0.493 3.507 9 O -0.553 6.553 10 N -0.705 5.705 11 C 0.249 3.751 12 C -0.545 4.545 13 H 0.065 0.935 14 C 0.064 3.936 15 N -0.885 5.885 16 Si 0.905 3.095 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.194 4.194 21 C 0.016 3.984 22 Cl -0.075 7.075 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.129 0.871 27 H 0.127 0.873 28 H 0.414 0.586 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.394 0.606 32 H 0.029 0.971 33 H 0.029 0.971 34 H 0.266 0.734 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.461 1.791 0.015 23.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.149 4.149 3 C -0.077 4.077 4 C -0.211 4.211 5 C 0.128 3.872 6 N -0.357 5.357 7 C -0.028 4.028 8 C 0.277 3.723 9 O -0.433 6.433 10 N -0.353 5.353 11 C 0.129 3.871 12 C -0.583 4.583 13 H 0.083 0.917 14 C -0.140 4.140 15 N -0.522 5.522 16 Si 0.732 3.268 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.207 1.207 20 C -0.218 4.218 21 C -0.011 4.011 22 Cl -0.046 7.046 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.147 0.853 27 H 0.145 0.855 28 H 0.253 0.747 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.227 0.773 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -22.881 2.354 0.013 23.002 hybrid contribution 0.732 -1.155 0.013 1.367 sum -22.149 1.199 0.026 22.182 Atomic orbital electron populations 1.20706 0.90775 1.02786 1.02192 1.19457 0.96392 0.91285 1.07749 1.20666 0.93156 0.96874 0.97048 1.20700 0.94322 0.96590 1.09512 1.17622 0.83495 0.93226 0.92896 1.44460 1.01923 1.08648 1.80685 1.21166 0.90835 0.87613 1.03218 1.20300 0.87757 0.86240 0.77983 1.90660 1.79803 1.21413 1.51401 1.46416 1.09358 1.07985 1.71507 1.19174 0.72751 0.97294 0.97930 1.21240 0.91651 0.92010 1.53433 0.91722 1.24959 0.97499 0.96989 0.94571 1.69977 1.08171 1.25319 1.48752 0.86338 0.79776 0.82865 0.77812 1.19572 1.20745 1.20741 1.20449 0.92166 0.97609 1.11564 1.20448 0.91579 0.86273 1.02840 1.98349 1.76724 1.32702 1.96787 0.91535 0.91717 0.91406 0.85321 0.85467 0.74654 0.89449 0.89456 0.77338 0.95330 0.95335 0.92404 0.84987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 9.61 36.01 0.35 -0.50 16 2 C -0.15 -1.48 5.89 -104.55 -0.62 -2.09 16 3 C -0.06 -0.56 9.69 -39.62 -0.38 -0.94 16 4 C -0.19 -2.02 9.90 -39.38 -0.39 -2.41 16 5 C 0.23 2.82 6.65 -83.79 -0.56 2.27 16 6 N -0.73 -9.58 5.70 -59.81 -0.34 -9.92 16 7 C 0.10 1.32 5.39 -5.19 -0.03 1.29 16 8 C 0.49 9.05 7.90 -10.99 -0.09 8.96 16 9 O -0.55 -12.30 15.67 5.55 0.09 -12.21 16 10 N -0.70 -13.84 5.55 -61.47 -0.34 -14.18 16 11 C 0.25 6.35 5.43 -5.19 -0.03 6.32 16 12 C -0.55 -14.35 9.28 -34.44 -0.32 -14.67 16 13 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.88 -25.58 13.29 55.43 0.74 -24.84 16 16 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 17 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 C -0.19 -2.26 9.09 -39.35 -0.36 -2.62 16 21 C 0.02 0.18 6.31 -39.53 -0.25 -0.07 16 22 Cl -0.07 -0.76 27.28 -51.86 -1.41 -2.18 16 23 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 25 H 0.07 0.54 6.89 -51.93 -0.36 0.18 16 26 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 27 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 28 H 0.41 5.86 7.45 -40.82 -0.30 5.55 16 29 H 0.09 1.00 7.95 -51.93 -0.41 0.58 16 30 H 0.09 1.00 7.95 -51.93 -0.41 0.58 16 31 H 0.39 6.48 8.32 -40.82 -0.34 6.14 16 32 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.13 1.42 6.73 -52.48 -0.35 1.06 16 LS Contribution 318.77 15.07 4.80 4.80 Total: -1.00 -30.57 318.77 -8.51 -39.08 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -4.25 Total: 6.87 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -2.77 Total: -2.84 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: 0.05 Total: -48.94 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.09 Total: -12.21 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.41 Total: -2.18 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.57 -8.51 -39.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020039153.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.224 kcal (2) G-P(sol) polarization free energy of solvation -30.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds