Wall clock time and date at job start Tue Mar 31 2020 06:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38248 * 120.04228 * 2 1 4 4 Cl 1.73599 * 119.97567 * 359.97311 * 3 2 1 5 5 C 1.38388 * 120.04460 * 180.25316 * 3 2 1 6 6 C 1.38285 * 120.13334 * 359.44516 * 5 3 2 7 7 C 1.38082 * 120.09278 * 0.55375 * 6 5 3 8 8 C 1.38867 * 120.04484 * 179.97438 * 2 1 3 9 9 N 1.39671 * 120.06676 * 0.04887 * 8 2 1 10 10 C 1.46501 * 120.00112 * 179.97438 * 9 8 2 11 11 C 1.50698 * 109.46995 * 179.97438 * 10 9 8 12 12 O 1.21281 * 120.00495 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99667 * 179.97438 * 11 10 9 14 14 C 1.46509 * 120.00035 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.47232 * 179.97438 * 14 13 11 16 16 H 1.07997 * 119.99832 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99703 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00556 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99782 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47030 * 90.00010 * 19 17 15 21 21 H 1.48499 * 109.46900 * 210.00245 * 19 17 15 22 22 H 1.48500 * 109.47108 * 330.00388 * 19 17 15 23 23 H 1.09003 * 109.46968 * 90.00071 * 1 2 3 24 24 H 1.08995 * 109.47062 * 210.00411 * 1 2 3 25 25 H 1.09000 * 109.46914 * 330.00232 * 1 2 3 26 26 H 1.07995 * 119.92532 * 179.72291 * 5 3 2 27 27 H 1.08004 * 119.95475 * 180.25033 * 6 5 3 28 28 H 1.07998 * 120.03040 * 179.70099 * 7 6 5 29 29 H 0.97003 * 119.99865 * 359.97438 * 9 8 2 30 30 H 1.09002 * 109.47091 * 299.99464 * 10 9 8 31 31 H 1.09001 * 109.46895 * 59.99555 * 10 9 8 32 32 H 0.97002 * 120.00636 * 359.97438 * 13 11 10 33 33 H 1.08994 * 109.46934 * 300.00191 * 14 13 11 34 34 H 1.09000 * 109.46590 * 59.99760 * 14 13 11 35 35 H 0.97000 * 120.00237 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.1968 0.0000 4 17 1.3316 2.7004 -0.0007 5 6 3.5830 1.1968 -0.0053 6 6 4.2773 0.0009 0.0010 7 6 3.5917 -1.1977 0.0010 8 6 2.2023 -1.2021 0.0005 9 7 1.5063 -2.4130 0.0000 10 6 2.2412 -3.6803 0.0000 11 6 1.2641 -4.8276 0.0001 12 8 0.0713 -4.6084 0.0006 13 7 1.7159 -6.0974 -0.0004 14 6 0.7660 -7.2129 -0.0009 15 6 1.5221 -8.5165 -0.0021 16 1 2.6020 -8.5144 -0.0020 17 6 0.8350 -9.7118 -0.0022 18 7 -0.4802 -9.7145 -0.0018 19 14 1.7721 -11.3278 -0.0029 20 1 2.0209 -11.7563 1.3970 21 1 0.9714 -12.3640 -0.7030 22 1 3.0692 -11.1475 -0.7032 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 4.1217 2.1328 -0.0098 27 1 5.3573 0.0044 0.0009 28 1 4.1349 -2.1311 0.0010 29 1 0.5363 -2.4149 -0.0003 30 1 2.8682 -3.7367 -0.8898 31 1 2.8677 -3.7370 0.8902 32 1 2.6699 -6.2729 -0.0012 33 1 0.1392 -7.1567 0.8890 34 1 0.1393 -7.1559 -0.8909 35 1 -0.9635 -10.5554 -0.0022 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020042735.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:25 Heat of formation + Delta-G solvation = -48.776803 kcal Electronic energy + Delta-G solvation = -18704.692798 eV Core-core repulsion = 15533.953444 eV Total energy + Delta-G solvation = -3170.739355 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.05316 -40.25116 -37.58214 -36.40680 -35.90282 -34.41190 -33.64526 -31.02442 -29.59862 -28.04966 -27.19899 -24.64374 -22.84672 -22.29516 -21.41632 -19.37967 -18.39595 -17.74437 -17.10653 -16.90469 -16.75176 -16.28514 -15.93183 -15.38673 -15.36510 -14.91461 -14.58796 -14.30850 -14.16926 -13.94792 -13.68916 -13.38516 -13.31992 -12.94430 -12.72698 -12.48889 -12.36001 -12.25801 -12.22051 -11.67377 -11.50173 -11.00957 -10.94598 -10.81876 -9.90570 -9.55548 -8.40572 -8.30228 -6.46702 0.29259 0.57690 1.19018 1.44020 1.45796 1.57009 1.61846 2.07672 2.38425 2.72565 2.80070 3.05381 3.79942 3.89075 4.02530 4.12464 4.32558 4.39377 4.49694 4.57357 4.68573 4.71915 4.74233 5.08253 5.19779 5.21944 5.29117 5.39516 5.43971 5.55708 5.62298 5.76613 5.82657 6.26139 6.60378 6.64883 6.82506 7.21547 7.39060 8.81854 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.045649 B = 0.002710 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.225274 B =10328.711650 C =10916.186879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.173 4.173 3 C -0.001 4.001 4 Cl -0.074 7.074 5 C -0.175 4.175 6 C -0.059 4.059 7 C -0.197 4.197 8 C 0.218 3.782 9 N -0.739 5.739 10 C 0.118 3.882 11 C 0.490 3.510 12 O -0.598 6.598 13 N -0.699 5.699 14 C 0.266 3.734 15 C -0.555 4.555 16 H 0.087 0.913 17 C 0.003 3.997 18 N -0.932 5.932 19 Si 0.984 3.016 20 H -0.271 1.271 21 H -0.286 1.286 22 H -0.254 1.254 23 H 0.070 0.930 24 H 0.057 0.943 25 H 0.076 0.924 26 H 0.144 0.856 27 H 0.161 0.839 28 H 0.148 0.852 29 H 0.404 0.596 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.413 0.587 33 H -0.011 1.011 34 H -0.011 1.011 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.358 20.427 -0.026 23.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.178 4.178 3 C -0.028 4.028 4 Cl -0.045 7.045 5 C -0.196 4.196 6 C -0.078 4.078 7 C -0.220 4.220 8 C 0.114 3.886 9 N -0.371 5.371 10 C -0.009 4.009 11 C 0.277 3.723 12 O -0.480 6.480 13 N -0.349 5.349 14 C 0.143 3.857 15 C -0.593 4.593 16 H 0.105 0.895 17 C -0.196 4.196 18 N -0.570 5.570 19 Si 0.807 3.193 20 H -0.197 1.197 21 H -0.212 1.212 22 H -0.177 1.177 23 H 0.088 0.912 24 H 0.076 0.924 25 H 0.095 0.905 26 H 0.162 0.838 27 H 0.179 0.821 28 H 0.166 0.834 29 H 0.242 0.758 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.250 0.750 33 H 0.007 0.993 34 H 0.007 0.993 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.394 20.382 -0.029 23.351 hybrid contribution -0.565 -0.942 0.015 1.099 sum 10.829 19.440 -0.014 22.253 Atomic orbital electron populations 1.20646 0.90635 1.02837 1.02517 1.19260 0.96702 0.90729 1.11154 1.20645 0.92778 0.85679 1.03699 1.98342 1.77391 1.31903 1.96824 1.21053 0.91173 1.00241 1.07099 1.21169 1.01192 0.90287 0.95136 1.21077 0.91161 1.00563 1.09199 1.17642 0.92002 0.84542 0.94416 1.44591 1.09140 1.01692 1.81680 1.21149 0.93008 0.80836 1.05944 1.21278 0.89708 0.85348 0.75947 1.90644 1.19244 1.85283 1.52862 1.46084 1.11567 1.05164 1.72081 1.18573 0.88718 0.84170 0.94264 1.21626 0.94443 0.90445 1.52771 0.89491 1.26057 0.95755 1.03919 0.93907 1.70132 1.08369 1.28505 1.50032 0.85171 0.78560 0.77024 0.78567 1.19673 1.21199 1.17734 0.91177 0.92398 0.90473 0.83805 0.82135 0.83402 0.75782 0.86411 0.86441 0.75045 0.99309 0.99297 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.49 9.17 71.24 0.65 -1.84 16 2 C -0.17 -4.05 5.90 -19.71 -0.12 -4.17 16 3 C 0.00 -0.02 6.31 22.31 0.14 0.12 16 4 Cl -0.07 -1.45 27.29 -2.72 -0.07 -1.53 16 5 C -0.17 -3.04 9.83 22.32 0.22 -2.82 16 6 C -0.06 -0.89 10.04 22.24 0.22 -0.67 16 7 C -0.20 -3.53 9.31 22.40 0.21 -3.32 16 8 C 0.22 5.03 6.63 38.21 0.25 5.28 16 9 N -0.74 -19.03 5.60 -343.14 -1.92 -20.95 16 10 C 0.12 2.75 5.39 85.63 0.46 3.22 16 11 C 0.49 17.75 7.90 87.66 0.69 18.44 16 12 O -0.60 -27.56 15.67 -3.03 -0.05 -27.61 16 13 N -0.70 -26.92 5.55 -466.78 -2.59 -29.51 16 14 C 0.27 13.93 5.43 85.63 0.46 14.40 16 15 C -0.56 -28.97 9.28 25.60 0.24 -28.73 16 16 H 0.09 4.04 7.60 -2.91 -0.02 4.01 16 17 C 0.00 0.18 5.46 84.65 0.46 0.64 16 18 N -0.93 -55.18 13.29 21.45 0.28 -54.89 16 19 Si 0.98 41.12 29.54 68.60 2.03 43.15 16 20 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 21 H -0.29 -11.98 7.11 99.48 0.71 -11.28 16 22 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 23 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.06 1.40 6.55 -2.39 -0.02 1.38 16 25 H 0.08 1.62 6.90 -2.39 -0.02 1.60 16 26 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 27 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 28 H 0.15 1.97 6.73 -2.91 -0.02 1.95 16 29 H 0.40 12.06 5.43 -92.71 -0.50 11.56 16 30 H 0.12 2.11 7.95 -2.39 -0.02 2.09 16 31 H 0.12 2.10 7.95 -2.39 -0.02 2.08 16 32 H 0.41 12.49 8.32 -92.71 -0.77 11.72 16 33 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 34 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 35 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -68.90 315.19 1.44 -67.47 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: -0.14 Total: 23.32 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 3.90 Total: 0.56 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -4.23 Total: -105.35 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.05 Total: -27.61 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.07 Total: -1.53 kcal Total: -68.90 1.44 -67.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020042735.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.690 kcal (2) G-P(sol) polarization free energy of solvation -68.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds