Wall clock time and date at job start Tue Mar 31 2020 06:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38292 * 119.92530 * 2 1 4 4 C 1.38112 * 120.09643 * 179.97438 * 3 2 1 5 5 C 1.38882 * 119.93481 * 359.97438 * 4 3 2 6 6 N 1.39752 * 120.07375 * 179.97438 * 5 4 3 7 7 C 1.46500 * 120.00366 * 0.02562 * 6 5 4 8 8 C 1.50698 * 109.47038 * 179.97438 * 7 6 5 9 9 O 1.21279 * 120.00282 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99612 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99768 * 179.97438 * 10 8 7 12 12 C 1.50707 * 109.47221 * 180.02562 * 11 10 8 13 13 H 1.08005 * 119.99808 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00297 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99896 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00074 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46988 * 90.00204 * 16 14 12 18 18 H 1.48503 * 109.47257 * 209.99891 * 16 14 12 19 19 H 1.48500 * 109.47245 * 330.00336 * 16 14 12 20 20 C 1.38992 * 119.84863 * 0.02562 * 5 4 3 21 21 Cl 1.73599 * 120.04748 * 179.97438 * 20 5 4 22 22 C 1.38212 * 119.89892 * 0.28146 * 20 5 4 23 23 H 1.08999 * 109.46994 * 90.00066 * 1 2 3 24 24 H 1.08991 * 109.47359 * 210.00139 * 1 2 3 25 25 H 1.08998 * 109.46923 * 330.00470 * 1 2 3 26 26 H 1.07998 * 119.94925 * 359.97438 * 3 2 1 27 27 H 1.07998 * 120.03508 * 179.97438 * 4 3 2 28 28 H 0.97004 * 119.99989 * 180.02562 * 6 5 4 29 29 H 1.09001 * 109.47301 * 300.00257 * 7 6 5 30 30 H 1.09005 * 109.46605 * 60.00051 * 7 6 5 31 31 H 0.96997 * 120.00132 * 0.02562 * 10 8 7 32 32 H 1.08993 * 109.47947 * 300.00538 * 11 10 8 33 33 H 1.09005 * 109.47155 * 60.00734 * 11 10 8 34 34 H 0.96994 * 119.99778 * 179.97438 * 15 14 12 35 35 H 1.07997 * 119.96337 * 179.72376 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5781 1.2027 0.0005 5 6 4.2747 0.0012 0.0016 6 7 5.6722 0.0020 0.0016 7 6 6.4041 1.2711 0.0010 8 6 7.8858 0.9964 0.0018 9 8 8.2907 -0.1468 0.0023 10 7 8.7611 2.0213 0.0009 11 6 10.2016 1.7544 0.0022 12 6 10.9544 3.0599 0.0015 13 1 10.4139 3.9950 -0.0002 14 6 12.3332 3.0606 0.0020 15 7 12.9914 1.9220 0.0026 16 14 13.2663 4.6788 0.0004 17 1 13.5131 5.1092 1.4001 18 1 14.5643 4.5011 -0.6990 19 1 12.4634 5.7125 -0.7010 20 6 3.5788 -1.2020 0.0016 21 17 4.4443 -2.7068 0.0023 22 6 2.1967 -1.1984 -0.0054 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6549 2.1326 -0.0004 27 1 4.1158 2.1392 0.0001 28 1 6.1577 -0.8378 0.0020 29 1 6.1405 1.8422 -0.8892 30 1 6.1404 1.8429 0.8908 31 1 8.4373 2.9356 0.0002 32 1 10.4647 1.1841 0.8930 33 1 10.4658 1.1818 -0.8869 34 1 13.9613 1.9225 0.0025 35 1 1.6549 -2.1327 -0.0099 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020361039.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:29 Heat of formation + Delta-G solvation = -31.629984 kcal Electronic energy + Delta-G solvation = -18604.553167 eV Core-core repulsion = 15434.557354 eV Total energy + Delta-G solvation = -3169.995813 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.90003 -38.91843 -36.46788 -35.73586 -34.31212 -32.46262 -31.62701 -30.85607 -28.61261 -26.84749 -25.11482 -23.16364 -22.34139 -21.10401 -19.89324 -18.15150 -16.93975 -16.38000 -15.73150 -15.45462 -15.42606 -15.14819 -14.49509 -14.20518 -14.02984 -13.92172 -13.51894 -13.41369 -12.75182 -12.70257 -12.41129 -12.03640 -11.95468 -11.80752 -11.35949 -11.31076 -11.05051 -10.94004 -10.86417 -10.38860 -10.06724 -9.48391 -9.31545 -8.92126 -8.82244 -8.04505 -7.42977 -6.22907 -4.30599 1.12351 1.36503 2.17720 3.11857 3.18839 3.20474 3.27255 3.29472 3.57875 4.00662 4.30623 4.62772 4.73943 5.03938 5.05642 5.13420 5.16574 5.28603 5.32928 5.37281 5.43218 5.50030 5.72117 5.76624 5.98474 6.09780 6.44273 6.61806 7.06465 7.20777 7.26322 7.41513 7.56443 7.68547 7.88739 8.45249 8.65647 8.90657 9.35995 10.87255 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.033165 B = 0.002967 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.067660 B = 9436.156938 C =10254.475139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.146 4.146 3 C -0.063 4.063 4 C -0.190 4.190 5 C 0.232 3.768 6 N -0.725 5.725 7 C 0.101 3.899 8 C 0.492 3.508 9 O -0.550 6.550 10 N -0.705 5.705 11 C 0.249 3.751 12 C -0.546 4.546 13 H 0.064 0.936 14 C 0.064 3.936 15 N -0.885 5.885 16 Si 0.905 3.095 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.272 1.272 20 C -0.114 4.114 21 Cl -0.071 7.071 22 C -0.060 4.060 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.125 0.875 27 H 0.131 0.869 28 H 0.416 0.584 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.393 0.607 32 H 0.029 0.971 33 H 0.029 0.971 34 H 0.267 0.733 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.550 -1.359 -0.022 23.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.148 4.148 3 C -0.082 4.082 4 C -0.213 4.213 5 C 0.125 3.875 6 N -0.357 5.357 7 C -0.027 4.027 8 C 0.276 3.724 9 O -0.429 6.429 10 N -0.353 5.353 11 C 0.129 3.871 12 C -0.584 4.584 13 H 0.082 0.918 14 C -0.140 4.140 15 N -0.522 5.522 16 Si 0.732 3.268 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.145 4.145 21 Cl -0.043 7.043 22 C -0.080 4.080 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.143 0.857 27 H 0.149 0.851 28 H 0.256 0.744 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.226 0.774 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -22.795 -2.209 -0.026 22.902 hybrid contribution 0.848 0.848 0.003 1.199 sum -21.948 -1.361 -0.023 21.990 Atomic orbital electron populations 1.20636 0.90978 1.02421 1.01917 1.19551 0.96017 0.92326 1.06956 1.20848 0.93265 0.97579 0.96532 1.20631 0.94380 0.95928 1.10378 1.17550 0.83830 0.92418 0.93683 1.44628 1.01937 1.09049 1.80070 1.21173 0.90918 0.87420 1.03233 1.20300 0.87761 0.86270 0.78084 1.90672 1.79688 1.21463 1.51126 1.46405 1.09335 1.07905 1.71665 1.19168 0.72738 0.97272 0.97945 1.21201 0.91649 0.91967 1.53569 0.91787 1.24960 0.97487 0.96982 0.94589 1.69971 1.08190 1.25395 1.48633 0.86390 0.79218 0.82896 0.78266 1.20413 1.20964 1.19702 1.20336 0.92450 0.85549 1.16160 1.98358 1.76867 1.31630 1.97416 1.20648 0.91000 0.98464 0.97843 0.91710 0.91925 0.91800 0.85683 0.85097 0.74372 0.89342 0.89352 0.77383 0.95344 0.95328 0.92353 0.85318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.68 10.01 36.01 0.36 -0.32 16 2 C -0.15 -1.37 5.88 -104.59 -0.62 -1.99 16 3 C -0.06 -0.59 9.69 -39.61 -0.38 -0.98 16 4 C -0.19 -2.04 9.31 -39.39 -0.37 -2.41 16 5 C 0.23 3.00 6.65 -83.73 -0.56 2.45 16 6 N -0.72 -10.51 5.66 -59.77 -0.34 -10.85 16 7 C 0.10 1.36 5.39 -5.19 -0.03 1.33 16 8 C 0.49 9.28 7.90 -10.99 -0.09 9.19 16 9 O -0.55 -12.71 15.67 5.56 0.09 -12.62 16 10 N -0.70 -13.97 5.55 -61.47 -0.34 -14.31 16 11 C 0.25 6.41 5.43 -5.19 -0.03 6.38 16 12 C -0.55 -14.41 9.28 -34.44 -0.32 -14.73 16 13 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.88 -25.73 13.29 55.43 0.74 -24.99 16 16 Si 0.91 20.48 29.54 -169.99 -5.02 15.45 16 17 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 20 C -0.11 -1.43 6.34 -39.31 -0.25 -1.68 16 21 Cl -0.07 -0.93 27.60 -51.86 -1.43 -2.36 16 22 C -0.06 -0.64 9.48 -39.58 -0.38 -1.01 16 23 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 25 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 26 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 27 H 0.13 1.19 6.74 -52.49 -0.35 0.83 16 28 H 0.42 6.84 6.11 -40.82 -0.25 6.59 16 29 H 0.09 0.99 7.95 -51.93 -0.41 0.58 16 30 H 0.09 0.99 7.95 -51.93 -0.41 0.58 16 31 H 0.39 6.46 8.32 -40.82 -0.34 6.12 16 32 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 319.12 15.07 4.81 4.81 Total: -1.00 -31.28 319.12 -8.50 -39.78 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -4.26 Total: 7.22 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -2.75 Total: -2.13 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: 0.06 Total: -50.14 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.09 Total: -12.62 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.43 Total: -2.36 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.28 -8.50 -39.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020361039.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.148 kcal (2) G-P(sol) polarization free energy of solvation -31.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds