Wall clock time and date at job start Tue Mar 31 2020 06:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00034 * 2 1 4 4 H 1.48497 * 109.47267 * 240.00388 * 3 2 1 5 5 H 1.48504 * 109.46683 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47289 * 119.99778 * 3 2 1 7 7 C 1.37878 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00431 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99816 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.46692 * 179.97438 * 9 7 2 11 11 C 1.34781 * 119.99373 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00650 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.99573 * 180.02562 * 11 10 9 14 14 S 1.80999 * 109.47005 * 180.02562 * 13 11 10 15 15 C 1.76202 * 99.99940 * 180.02562 * 14 13 11 16 16 N 1.31284 * 126.48709 * 0.02720 * 15 14 13 17 17 N 1.28515 * 109.85936 * 179.97438 * 16 15 14 18 18 C 1.30306 * 110.07825 * 359.97438 * 17 16 15 19 19 N 1.36534 * 126.48289 * 180.29110 * 15 14 13 20 20 C 1.46506 * 127.14503 * 0.02562 * 19 15 14 21 21 C 1.52995 * 117.49881 * 188.92407 * 20 19 15 22 22 C 1.52994 * 117.50315 * 120.26173 * 20 19 15 23 23 H 0.96999 * 120.00218 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46881 * 60.00318 * 9 7 2 25 25 H 1.08994 * 109.47228 * 300.00371 * 9 7 2 26 26 H 0.96992 * 120.00743 * 0.02562 * 10 9 7 27 27 H 1.09003 * 109.47050 * 60.00270 * 13 11 10 28 28 H 1.08994 * 109.47658 * 300.00469 * 13 11 10 29 29 H 1.08002 * 126.33874 * 179.97438 * 18 17 16 30 30 H 1.08999 * 115.54871 * 334.59323 * 20 19 15 31 31 H 1.09002 * 117.50074 * 359.97438 * 21 20 19 32 32 H 1.09003 * 117.50130 * 145.01610 * 21 20 19 33 33 H 1.08995 * 117.50595 * 214.98107 * 22 20 19 34 34 H 1.09004 * 117.49563 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2032 -3.6126 -0.0018 11 6 1.7539 -4.8833 -0.0015 12 8 0.5615 -5.1050 -0.0006 13 6 2.7332 -6.0288 -0.0022 14 16 1.8283 -7.5963 -0.0023 15 6 3.1781 -8.7288 -0.0023 16 7 4.4546 -8.4220 -0.0018 17 7 5.1616 -9.4952 -0.0015 18 6 4.3856 -10.5421 -0.0013 19 7 3.0944 -10.0916 -0.0080 20 6 1.8746 -10.9030 -0.0158 21 6 2.0281 -12.4113 0.1894 22 6 1.6695 -11.8591 -1.1925 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 3.1568 -3.4354 -0.0021 27 1 3.3605 -5.9710 0.8874 28 1 3.3594 -5.9710 -0.8925 29 1 4.7035 -11.5743 -0.0014 30 1 0.9896 -10.4254 0.4047 31 1 3.0367 -12.8001 0.3297 32 1 1.2440 -12.9262 0.7446 33 1 0.6497 -12.0108 -1.5459 34 1 2.4420 -11.8841 -1.9611 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000022542157.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:43 Heat of formation + Delta-G solvation = 69.963960 kcal Electronic energy + Delta-G solvation = -18509.398702 eV Core-core repulsion = 15378.144791 eV Total energy + Delta-G solvation = -3131.253912 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.06317 -38.88497 -38.11587 -34.31747 -33.05534 -32.44548 -31.03305 -29.91296 -26.85897 -24.70265 -23.28700 -22.77507 -22.56511 -21.52172 -19.93275 -18.58166 -17.19998 -16.52146 -16.41284 -15.90090 -15.80364 -15.29112 -15.16128 -14.93073 -14.20214 -13.94984 -13.61536 -12.97425 -12.75960 -12.32741 -12.21838 -12.00123 -11.74451 -11.69886 -11.51474 -11.04276 -10.96111 -10.88730 -10.39990 -10.33790 -10.32739 -10.01873 -9.46207 -9.35694 -8.78465 -8.02821 -7.70473 -6.19374 -4.26763 0.91236 1.37067 1.96125 2.20194 2.62935 3.05099 3.12478 3.25244 3.29989 3.31488 3.82627 3.92546 4.10311 4.20307 4.25031 4.33806 4.82345 4.95062 5.05304 5.14766 5.17570 5.19091 5.25185 5.36026 5.40791 5.50238 5.76015 6.46944 7.20659 7.27578 7.44812 7.59674 7.91777 8.42157 8.46781 8.67718 8.92691 9.39583 10.90721 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.042793 B = 0.002902 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.161846 B = 9646.635261 C =10208.984494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.250 3.750 10 N -0.700 5.700 11 C 0.517 3.483 12 O -0.544 6.544 13 C -0.143 4.143 14 S 0.080 5.920 15 C 0.153 3.847 16 N -0.298 5.298 17 N -0.285 5.285 18 C 0.150 3.850 19 N -0.438 5.438 20 C 0.053 3.947 21 C -0.168 4.168 22 C -0.171 4.171 23 H 0.267 0.733 24 H 0.030 0.970 25 H 0.030 0.970 26 H 0.395 0.605 27 H 0.122 0.878 28 H 0.122 0.878 29 H 0.218 0.782 30 H 0.150 0.850 31 H 0.105 0.895 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.574 -24.688 -0.385 25.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.130 3.870 10 N -0.349 5.349 11 C 0.299 3.701 12 O -0.424 6.424 13 C -0.295 4.295 14 S 0.307 5.693 15 C -0.221 4.221 16 N -0.142 5.142 17 N -0.124 5.124 18 C -0.140 4.140 19 N -0.131 5.131 20 C -0.052 4.052 21 C -0.205 4.205 22 C -0.209 4.209 23 H 0.077 0.923 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.228 0.772 27 H 0.140 0.860 28 H 0.140 0.860 29 H 0.234 0.766 30 H 0.168 0.832 31 H 0.124 0.876 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.656 -24.018 -0.383 24.298 hybrid contribution 1.242 0.325 0.010 1.284 sum 4.898 -23.693 -0.372 24.197 Atomic orbital electron populations 1.69959 1.06119 1.27526 1.48658 1.24944 0.94931 0.99481 0.94579 0.86451 0.79404 0.82166 0.78770 1.20005 1.21053 1.20010 1.21178 0.93334 0.90314 1.53586 0.91782 1.19195 0.88185 0.81620 0.98042 1.46387 1.11649 1.05420 1.71410 1.19469 0.88399 0.83936 0.78328 1.90704 1.16143 1.84305 1.51207 1.23828 1.02598 0.93963 1.09136 1.86191 0.97485 0.93501 1.92094 1.27492 1.00975 0.86636 1.07034 1.74730 0.98059 1.20519 1.20913 1.73932 1.26609 0.94736 1.17077 1.26536 0.79401 1.01929 1.06118 1.45973 1.07246 1.04982 1.54928 1.22110 0.87373 0.89103 1.06599 1.23453 1.04600 0.92533 0.99942 1.23539 1.04761 1.00679 0.91945 0.92320 0.95202 0.95196 0.77178 0.86020 0.86020 0.76613 0.83235 0.87632 0.86463 0.86521 0.87693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.82 13.29 55.43 0.74 -25.08 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.91 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.55 -14.63 9.28 -34.44 -0.32 -14.95 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.25 6.49 5.43 -5.19 -0.03 6.47 16 10 N -0.70 -14.40 5.55 -61.47 -0.34 -14.74 16 11 C 0.52 10.03 7.85 -10.98 -0.09 9.94 16 12 O -0.54 -12.53 15.86 5.56 0.09 -12.44 16 13 C -0.14 -2.13 5.72 36.01 0.21 -1.92 16 14 S 0.08 1.13 21.11 -107.50 -2.27 -1.14 16 15 C 0.15 2.09 8.07 -88.34 -0.71 1.38 16 16 N -0.30 -4.65 11.60 30.68 0.36 -4.30 16 17 N -0.28 -4.11 12.17 29.90 0.36 -3.75 16 18 C 0.15 1.54 12.11 -88.95 -1.08 0.47 16 19 N -0.44 -4.64 3.14 -111.06 -0.35 -4.99 16 20 C 0.05 0.37 6.69 -67.93 -0.45 -0.08 16 21 C -0.17 -0.66 10.01 -26.70 -0.27 -0.93 16 22 C -0.17 -0.84 10.42 -26.70 -0.28 -1.11 16 23 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 24 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.40 6.96 8.32 -40.82 -0.34 6.62 16 27 H 0.12 1.65 8.14 -51.92 -0.42 1.23 16 28 H 0.12 1.66 8.14 -51.92 -0.42 1.23 16 29 H 0.22 1.19 7.19 -52.49 -0.38 0.81 16 30 H 0.15 1.02 8.08 -51.93 -0.42 0.60 16 31 H 0.11 0.32 6.96 -51.93 -0.36 -0.04 16 32 H 0.12 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 318.07 15.07 4.79 4.79 Total: -1.00 -34.36 318.07 -8.75 -43.11 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -3.99 Total: 1.87 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -3.12 Total: 0.94 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 0.77 Total: -52.86 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.09 Total: -12.44 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.27 Total: -1.14 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.36 -8.75 -43.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022542157.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.072 kcal (2) G-P(sol) polarization free energy of solvation -34.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds