Wall clock time and date at job start Tue Mar 31 2020 05:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42894 * 109.47207 * 2 1 4 4 C 1.35738 * 116.99937 * 179.97438 * 3 2 1 5 5 N 1.32150 * 119.72693 * 0.02562 * 4 3 2 6 6 C 1.31999 * 121.71776 * 179.97438 * 5 4 3 7 7 C 1.38080 * 120.97546 * 0.02562 * 6 5 4 8 8 C 1.38738 * 119.34481 * 0.02562 * 7 6 5 9 9 C 1.38959 * 118.42583 * 0.02562 * 8 7 6 10 10 N 1.40132 * 120.50970 * 180.02562 * 9 8 7 11 11 C 1.34782 * 119.99658 * 24.57299 * 10 9 8 12 12 O 1.21299 * 120.00033 * 5.59919 * 11 10 9 13 13 C 1.50694 * 119.99631 * 185.59508 * 11 10 9 14 14 S 1.81005 * 109.46916 * 180.02562 * 13 11 10 15 15 C 1.76200 * 100.00168 * 180.02562 * 14 13 11 16 16 H 1.08001 * 119.99707 * 359.97438 * 15 14 13 17 17 C 1.38793 * 119.99981 * 180.02562 * 15 14 13 18 18 N 1.31632 * 120.00177 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00123 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46943 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47274 * 119.99976 * 19 17 15 22 22 H 1.48500 * 109.47377 * 240.00427 * 19 17 15 23 23 H 1.08998 * 109.47161 * 60.00049 * 1 2 3 24 24 H 1.09005 * 109.47201 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47241 * 299.99429 * 1 2 3 26 26 H 1.08996 * 109.46874 * 239.99913 * 2 1 3 27 27 H 1.09005 * 109.47105 * 120.00343 * 2 1 3 28 28 H 1.07995 * 119.51310 * 179.97438 * 6 5 4 29 29 H 1.07996 * 120.33219 * 180.02562 * 7 6 5 30 30 H 1.07994 * 120.78933 * 180.02562 * 8 7 6 31 31 H 0.97001 * 120.00034 * 204.57800 * 10 9 8 32 32 H 1.08999 * 109.47239 * 299.99833 * 13 11 10 33 33 H 1.08996 * 109.47155 * 60.00500 * 13 11 10 34 34 H 0.97005 * 120.00115 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3520 1.5250 0.0005 5 7 4.1520 0.4732 0.0005 6 6 5.4658 0.6005 0.0005 7 6 6.0590 1.8474 0.0011 8 6 5.2589 2.9809 0.0022 9 6 3.8791 2.8166 0.0032 10 7 3.0299 3.9313 0.0038 11 6 3.4656 5.1106 -0.4820 12 8 4.5544 5.1832 -1.0118 13 6 2.6001 6.3388 -0.3669 14 16 3.4562 7.7516 -1.1070 15 6 2.2541 9.0119 -0.8401 16 1 1.3238 8.7747 -0.3454 17 6 2.5022 10.3091 -1.2666 18 7 3.6354 10.5978 -1.8709 19 14 1.2275 11.6451 -0.9844 20 1 0.0493 11.0663 -0.2901 21 1 1.8155 12.7213 -0.1470 22 1 0.8046 12.2098 -2.2911 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 6.0860 -0.2836 0.0009 29 1 7.1350 1.9396 0.0007 30 1 5.6981 3.9675 0.0022 31 1 2.1286 3.8542 0.3539 32 1 1.6588 6.1703 -0.8899 33 1 2.3999 6.5450 0.6844 34 1 3.8087 11.5044 -2.1693 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027584703.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:54 Heat of formation + Delta-G solvation = -37.223943 kcal Electronic energy + Delta-G solvation = -18924.678032 eV Core-core repulsion = 15756.483353 eV Total energy + Delta-G solvation = -3168.194679 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.04772 -39.28847 -37.98185 -34.91991 -32.47301 -32.26128 -31.70916 -30.11326 -28.32654 -25.53986 -24.60067 -23.13689 -22.51204 -20.45405 -18.73943 -18.18057 -17.44773 -16.86834 -16.50980 -15.88791 -15.20426 -15.11951 -14.84089 -14.22306 -14.10597 -14.05950 -13.56498 -13.20281 -12.80011 -12.69210 -12.57531 -12.47083 -12.17631 -11.71419 -11.10104 -11.06691 -11.00123 -10.85604 -10.80483 -10.11681 -9.86270 -9.52880 -9.17588 -9.11361 -8.31635 -7.93409 -6.56439 -6.26302 -3.97712 1.02622 1.24282 2.81570 2.83582 2.86452 3.19453 3.24527 3.29330 3.55246 3.76878 4.15505 4.27215 4.72893 4.79008 4.81651 4.90989 5.01921 5.09439 5.12448 5.23987 5.32946 5.51755 5.59106 5.60165 5.76231 5.77961 5.88681 6.04874 6.09802 6.28131 6.60137 7.14617 7.43700 7.56184 7.73257 8.30939 8.32469 9.19469 10.81172 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.025650 B = 0.003575 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.370809 B = 7830.634329 C = 8821.912808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.070 3.930 3 O -0.311 6.311 4 C 0.290 3.710 5 N -0.522 5.522 6 C 0.105 3.895 7 C -0.182 4.182 8 C -0.063 4.063 9 C 0.100 3.900 10 N -0.665 5.665 11 C 0.533 3.467 12 O -0.499 6.499 13 C -0.153 4.153 14 S -0.056 6.056 15 C -0.536 4.536 16 H 0.074 0.926 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.920 3.080 20 H -0.271 1.271 21 H -0.279 1.279 22 H -0.279 1.279 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.158 0.842 29 H 0.140 0.860 30 H 0.166 0.834 31 H 0.415 0.585 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.171 -20.653 5.768 21.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.005 4.005 3 O -0.219 6.219 4 C 0.108 3.892 5 N -0.246 5.246 6 C -0.051 4.051 7 C -0.203 4.203 8 C -0.090 4.090 9 C 0.001 3.999 10 N -0.311 5.311 11 C 0.321 3.679 12 O -0.372 6.372 13 C -0.304 4.304 14 S 0.170 5.830 15 C -0.684 4.684 16 H 0.093 0.907 17 C -0.135 4.135 18 N -0.502 5.502 19 Si 0.746 3.254 20 H -0.196 1.196 21 H -0.205 1.205 22 H -0.205 1.205 23 H 0.084 0.916 24 H 0.096 0.904 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.176 0.824 29 H 0.158 0.842 30 H 0.183 0.817 31 H 0.252 0.748 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.891 -20.956 4.804 21.518 hybrid contribution -2.073 1.275 0.908 2.598 sum -2.963 -19.681 5.713 20.706 Atomic orbital electron populations 1.21831 0.93070 1.02817 1.03438 1.22553 0.94586 0.81004 1.02359 1.86170 1.16569 1.30753 1.88371 1.19447 0.84382 0.88436 0.96954 1.67273 1.06775 1.31690 1.18838 1.22282 0.88947 0.97460 0.96403 1.21953 1.01542 0.92522 1.04307 1.21856 0.90523 1.01701 0.94956 1.17857 0.91147 0.84851 1.06048 1.43524 1.17021 1.08097 1.62456 1.20583 0.87487 0.83448 0.76409 1.90661 1.21604 1.84498 1.40429 1.23544 1.02907 0.97782 1.06156 1.85391 1.25074 0.96771 1.75762 1.22900 1.05037 0.95306 1.45195 0.90739 1.24995 0.96142 0.97964 0.94448 1.70023 1.22937 1.20578 1.36699 0.86098 0.80530 0.80620 0.78143 1.19575 1.20533 1.20530 0.91551 0.90386 0.91623 0.91722 0.91764 0.82450 0.84202 0.81710 0.74841 0.88705 0.88605 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.16 0.38 -0.74 16 2 C 0.07 0.68 6.03 37.16 0.22 0.90 16 3 O -0.31 -3.88 9.55 -18.92 -0.18 -4.06 16 4 C 0.29 4.00 7.51 -16.95 -0.13 3.87 16 5 N -0.52 -6.70 9.21 -13.17 -0.12 -6.82 16 6 C 0.10 1.13 11.17 -17.54 -0.20 0.94 16 7 C -0.18 -2.07 10.10 -39.45 -0.40 -2.47 16 8 C -0.06 -0.90 8.83 -39.13 -0.35 -1.25 16 9 C 0.10 1.47 6.47 -83.33 -0.54 0.93 16 10 N -0.66 -9.82 5.29 -9.64 -0.05 -9.87 16 11 C 0.53 9.77 7.67 -10.99 -0.08 9.68 16 12 O -0.50 -10.66 13.07 5.54 0.07 -10.59 16 13 C -0.15 -3.00 6.16 36.00 0.22 -2.77 16 14 S -0.06 -1.49 20.57 -107.50 -2.21 -3.70 16 15 C -0.54 -14.99 9.50 30.94 0.29 -14.70 16 16 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 17 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 18 N -0.87 -25.76 13.22 55.49 0.73 -25.03 16 19 Si 0.92 21.13 29.55 -169.99 -5.02 16.10 16 20 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.63 8.11 -51.93 -0.42 0.21 16 27 H 0.06 0.60 8.11 -51.93 -0.42 0.18 16 28 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 29 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 30 H 0.17 2.64 5.89 -52.49 -0.31 2.33 16 31 H 0.42 5.07 8.36 -40.82 -0.34 4.72 16 32 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 33 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 34 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16 LS Contribution 314.41 15.07 4.74 4.74 Total: -1.00 -33.35 314.41 -6.70 -40.06 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -4.00 Total: 2.80 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -0.66 Total: -3.62 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 0.56 Total: -41.72 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.11 Total: -14.65 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.35 -6.70 -40.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027584703.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.834 kcal (2) G-P(sol) polarization free energy of solvation -33.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds