Wall clock time and date at job start Tue Mar 31 2020 06:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38146 * 120.02085 * 2 1 4 4 C 1.38236 * 120.08205 * 180.25388 * 3 2 1 5 5 C 1.38422 * 120.12332 * 359.44928 * 4 3 2 6 6 Cl 1.73602 * 119.97655 * 180.25475 * 5 4 3 7 7 C 1.38211 * 120.04959 * 0.27386 * 5 4 3 8 8 C 1.38850 * 120.02237 * 179.70388 * 2 1 3 9 9 N 1.39947 * 120.06651 * 0.02562 * 8 2 1 10 10 C 1.34770 * 120.00389 * 145.28853 * 9 8 2 11 11 O 1.21593 * 120.00094 * 4.48053 * 10 9 8 12 12 N 1.34780 * 120.00152 * 184.47352 * 10 9 8 13 13 C 1.46495 * 119.99800 * 0.02562 * 12 10 9 14 14 C 1.46503 * 119.99862 * 179.97438 * 12 10 9 15 15 C 1.50703 * 109.46663 * 90.00622 * 14 12 10 16 16 H 1.07994 * 120.00016 * 359.97438 * 15 14 12 17 17 C 1.37877 * 119.99483 * 180.02562 * 15 14 12 18 18 N 1.31513 * 119.99784 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00269 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47235 * 90.00177 * 19 17 15 21 21 H 1.48501 * 109.47083 * 210.00221 * 19 17 15 22 22 H 1.48502 * 109.47123 * 330.00009 * 19 17 15 23 23 H 1.08998 * 109.47492 * 270.29543 * 1 2 3 24 24 H 1.08997 * 109.47466 * 30.29588 * 1 2 3 25 25 H 1.09000 * 109.47166 * 150.29450 * 1 2 3 26 26 H 1.07997 * 119.95961 * 359.97438 * 3 2 1 27 27 H 1.08000 * 119.93735 * 179.72790 * 4 3 2 28 28 H 1.07995 * 120.04782 * 179.97438 * 7 5 4 29 29 H 0.97008 * 119.99655 * 325.29407 * 9 8 2 30 30 H 1.08995 * 109.47531 * 89.99914 * 13 12 10 31 31 H 1.09001 * 109.46786 * 209.99467 * 13 12 10 32 32 H 1.09002 * 109.47160 * 329.99183 * 13 12 10 33 33 H 1.08996 * 109.46760 * 210.00124 * 14 12 10 34 34 H 1.08998 * 109.47470 * 330.00685 * 14 12 10 35 35 H 0.96995 * 120.00226 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1961 0.0000 4 6 3.5805 1.1976 -0.0053 5 6 4.2765 0.0011 0.0009 6 17 6.0125 0.0075 0.0009 7 6 3.5904 -1.1986 0.0067 8 6 2.2017 -1.2022 0.0062 9 7 1.5038 -2.4152 0.0119 10 6 1.9996 -3.4811 -0.6472 11 8 3.0914 -3.4136 -1.1782 12 7 1.2854 -4.6219 -0.7177 13 6 -0.0301 -4.7031 -0.0782 14 6 1.8242 -5.7803 -1.4347 15 6 2.6206 -6.6346 -0.4823 16 1 2.7162 -6.3435 0.5533 17 6 3.2280 -7.7872 -0.9334 18 7 3.9235 -8.5325 -0.1024 19 14 3.0632 -8.2903 -2.7248 20 1 4.1732 -7.6939 -3.5106 21 1 3.1212 -9.7704 -2.8306 22 1 1.7641 -7.8065 -3.2573 23 1 -0.3634 0.0053 1.0276 24 1 -0.3634 0.8873 -0.5184 25 1 -0.3633 -0.8926 -0.5092 26 1 1.6578 2.1312 -0.0004 27 1 4.1185 2.1341 -0.0097 28 1 4.1334 -2.1321 0.0111 29 1 0.6631 -2.4889 0.4903 30 1 -0.7983 -4.3931 -0.7866 31 1 -0.2186 -5.7297 0.2358 32 1 -0.0522 -4.0471 0.7920 33 1 1.0030 -6.3658 -1.8480 34 1 2.4702 -5.4388 -2.2435 35 1 4.3511 -9.3431 -0.4198 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033875766.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:00 Heat of formation + Delta-G solvation = 0.228289 kcal Electronic energy + Delta-G solvation = -19690.665827 eV Core-core repulsion = 16522.051493 eV Total energy + Delta-G solvation = -3168.614335 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.53538 -38.73151 -36.47486 -35.18107 -34.48417 -32.54707 -32.38162 -29.88100 -28.31372 -26.78631 -25.98599 -23.45695 -22.11047 -21.23748 -19.56298 -18.08808 -17.09865 -16.99652 -15.91842 -15.62886 -15.06659 -14.76095 -14.23882 -14.05291 -13.81139 -13.50356 -13.33058 -12.89955 -12.76991 -12.69627 -12.44120 -12.12520 -11.64466 -11.60722 -11.48904 -11.20868 -10.99344 -10.83779 -10.54967 -10.24286 -10.06154 -9.61339 -9.39218 -8.60689 -8.58048 -8.10932 -7.71034 -6.10235 -4.09525 1.14654 1.35440 2.23290 3.01585 3.28819 3.34535 3.37029 3.47214 3.85932 4.29874 4.38305 4.71933 4.84490 5.04580 5.20395 5.22932 5.32967 5.40370 5.43840 5.58681 5.69609 5.81210 5.85956 6.00208 6.16621 6.31966 6.38439 6.48435 6.56848 6.82749 7.05721 7.16895 7.38971 7.58472 8.34930 8.44877 8.92132 9.04768 9.49514 11.03142 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.018769 B = 0.004892 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.479293 B = 5722.650117 C = 6827.170293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.121 4.121 3 C -0.092 4.092 4 C -0.134 4.134 5 C -0.019 4.019 6 Cl -0.072 7.072 7 C -0.110 4.110 8 C 0.191 3.809 9 N -0.691 5.691 10 C 0.699 3.301 11 O -0.564 6.564 12 N -0.606 5.606 13 C 0.083 3.917 14 C 0.230 3.770 15 C -0.531 4.531 16 H 0.074 0.926 17 C 0.073 3.927 18 N -0.896 5.896 19 Si 0.876 3.124 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.266 1.266 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.131 0.869 27 H 0.130 0.870 28 H 0.158 0.842 29 H 0.404 0.596 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.033 0.967 34 H 0.039 0.961 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.461 18.703 1.236 20.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.124 4.124 3 C -0.111 4.111 4 C -0.154 4.154 5 C -0.047 4.047 6 Cl -0.043 7.043 7 C -0.131 4.131 8 C 0.094 3.906 9 N -0.341 5.341 10 C 0.401 3.599 11 O -0.440 6.440 12 N -0.341 5.341 13 C -0.061 4.061 14 C 0.109 3.891 15 C -0.570 4.570 16 H 0.092 0.908 17 C -0.129 4.129 18 N -0.535 5.535 19 Si 0.703 3.297 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.191 1.191 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.149 0.851 27 H 0.148 0.852 28 H 0.175 0.825 29 H 0.242 0.758 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.448 18.414 0.811 19.880 hybrid contribution -0.226 -0.516 -0.541 0.781 sum -7.674 17.898 0.270 19.476 Atomic orbital electron populations 1.20710 0.90773 1.03139 1.02271 1.19736 0.96334 0.91695 1.04617 1.20672 0.93098 0.97040 1.00295 1.20913 0.94159 0.96638 1.03683 1.20722 0.84543 0.94626 1.04760 1.98363 1.10120 1.98940 1.96916 1.21372 0.93108 0.98671 0.99966 1.17184 0.90397 0.84458 0.98606 1.42912 1.26661 1.09334 1.55210 1.15886 0.84285 0.80020 0.79735 1.90906 1.19639 1.82235 1.51231 1.47137 1.18221 1.12243 1.56480 1.21635 0.84640 1.03692 0.96168 1.19641 0.94561 0.81966 0.92883 1.21334 1.31662 1.06440 0.97550 0.90760 1.24843 0.94479 0.96073 0.97531 1.69893 1.33437 1.15096 1.35046 0.86854 0.79314 0.77833 0.85683 1.19835 1.21051 1.19071 0.91115 0.91104 0.91563 0.85084 0.85246 0.82474 0.75801 0.93427 0.89904 0.92900 0.94925 0.94307 0.92518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 9.47 36.00 0.34 -0.61 16 2 C -0.12 -1.42 5.90 -104.43 -0.62 -2.04 16 3 C -0.09 -0.97 9.70 -39.62 -0.38 -1.36 16 4 C -0.13 -1.58 9.83 -39.51 -0.39 -1.97 16 5 C -0.02 -0.28 6.32 -39.52 -0.25 -0.53 16 6 Cl -0.07 -1.03 28.95 -51.86 -1.50 -2.54 16 7 C -0.11 -1.88 8.48 -39.36 -0.33 -2.21 16 8 C 0.19 2.90 6.29 -83.69 -0.53 2.38 16 9 N -0.69 -10.74 4.63 -14.23 -0.07 -10.81 16 10 C 0.70 14.32 8.12 -86.92 -0.71 13.61 16 11 O -0.56 -13.91 13.34 5.28 0.07 -13.83 16 12 N -0.61 -12.20 2.86 -188.74 -0.54 -12.74 16 13 C 0.08 1.18 10.24 59.84 0.61 1.80 16 14 C 0.23 5.54 4.23 -5.19 -0.02 5.52 16 15 C -0.53 -15.11 9.94 -34.44 -0.34 -15.46 16 16 H 0.07 2.33 8.06 -52.49 -0.42 1.90 16 17 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 18 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 19 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 20 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 23 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 25 H 0.07 0.58 7.17 -51.93 -0.37 0.21 16 26 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 27 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 28 H 0.16 3.21 6.20 -52.49 -0.33 2.89 16 29 H 0.40 4.88 5.54 -40.82 -0.23 4.65 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 32 H 0.05 0.60 6.30 -51.93 -0.33 0.28 16 33 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 34 H 0.04 1.00 6.85 -51.93 -0.36 0.65 16 35 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 310.04 15.07 4.67 4.67 Total: -1.00 -33.89 310.04 -8.07 -41.96 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -4.10 Total: 2.17 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -2.71 Total: 1.16 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: 0.17 Total: -50.34 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.07 Total: -13.83 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -1.50 Total: -2.54 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.89 -8.07 -41.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033875766.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.189 kcal (2) G-P(sol) polarization free energy of solvation -33.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds