Wall clock time and date at job start Tue Mar 31 2020 06:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38283 * 119.93747 * 2 1 4 4 C 1.38091 * 120.07977 * 180.23930 * 3 2 1 5 5 C 1.38894 * 119.95764 * 359.46037 * 4 3 2 6 6 N 1.39945 * 120.06197 * 180.25255 * 5 4 3 7 7 C 1.34783 * 119.99583 * 144.91211 * 6 5 4 8 8 O 1.21590 * 120.00064 * 4.59256 * 7 6 5 9 9 N 1.34776 * 119.99914 * 184.58978 * 7 6 5 10 10 C 1.46502 * 119.99925 * 0.02562 * 9 7 6 11 11 C 1.46499 * 119.99973 * 179.97438 * 9 7 6 12 12 C 1.50706 * 109.46777 * 90.00495 * 11 9 7 13 13 H 1.07999 * 119.99774 * 359.97438 * 12 11 9 14 14 C 1.37877 * 119.99541 * 180.02562 * 12 11 9 15 15 N 1.31513 * 120.00269 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99535 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47249 * 89.99815 * 16 14 12 18 18 H 1.48499 * 109.47147 * 209.99689 * 16 14 12 19 19 H 1.48499 * 109.47116 * 329.99630 * 16 14 12 20 20 C 1.38821 * 119.87591 * 0.28342 * 5 4 3 21 21 C 1.38254 * 119.91314 * 359.97438 * 20 5 4 22 22 Cl 1.73606 * 119.97678 * 179.97438 * 21 20 5 23 23 H 1.09004 * 109.47037 * 270.27650 * 1 2 3 24 24 H 1.08998 * 109.47093 * 30.27445 * 1 2 3 25 25 H 1.08999 * 109.47398 * 150.27848 * 1 2 3 26 26 H 1.07997 * 119.95831 * 359.97438 * 3 2 1 27 27 H 1.08002 * 120.01805 * 179.73947 * 4 3 2 28 28 H 0.96993 * 120.00260 * 324.92028 * 6 5 4 29 29 H 1.09000 * 109.47129 * 89.99711 * 10 9 7 30 30 H 1.08998 * 109.46762 * 209.99378 * 10 9 7 31 31 H 1.08998 * 109.46941 * 329.99991 * 10 9 7 32 32 H 1.09005 * 109.47313 * 210.00193 * 11 9 7 33 33 H 1.08992 * 109.47474 * 330.00674 * 11 9 7 34 34 H 0.96999 * 119.99616 * 180.02562 * 15 14 12 35 35 H 1.07994 * 120.04377 * 179.97438 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5781 1.2018 -0.0050 5 6 4.2747 0.0001 0.0013 6 7 5.6741 0.0011 0.0016 7 6 6.3484 -0.9501 0.6776 8 8 5.7439 -1.8565 1.2175 9 7 7.6929 -0.8967 0.7552 10 6 8.4213 0.1956 0.1052 11 6 8.4258 -1.9304 1.4905 12 6 8.7765 -3.0589 0.5552 13 1 8.4824 -3.0110 -0.4828 14 6 9.4718 -4.1528 1.0252 15 7 9.8295 -4.2112 2.2894 16 14 9.9058 -5.5519 -0.1339 17 1 11.2294 -5.2888 -0.7537 18 1 9.9601 -6.8262 0.6268 19 1 8.8731 -5.6532 -1.1962 20 6 3.5801 -1.2018 0.0067 21 6 2.1975 -1.1992 0.0063 22 17 1.3272 -2.7013 0.0123 23 1 -0.3633 0.0050 1.0277 24 1 -0.3633 0.8875 -0.5181 25 1 -0.3634 -0.8924 -0.5095 26 1 1.6555 2.1326 -0.0004 27 1 4.1160 2.1382 -0.0092 28 1 6.1587 0.6863 -0.4845 29 1 8.5301 1.0257 0.8032 30 1 9.4075 -0.1555 -0.1984 31 1 7.8681 0.5293 -0.7727 32 1 9.3398 -1.5035 1.9035 33 1 7.8037 -2.3101 2.3008 34 1 10.3190 -4.9806 2.6198 35 1 4.1190 -2.1377 0.0112 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035660938.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:00 Heat of formation + Delta-G solvation = -4.690182 kcal Electronic energy + Delta-G solvation = -19462.509886 eV Core-core repulsion = 16293.682271 eV Total energy + Delta-G solvation = -3168.827616 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.35612 -38.74261 -36.40546 -35.17142 -34.55823 -32.66144 -31.34280 -30.68270 -27.90615 -26.56315 -25.49995 -23.17229 -22.79993 -21.28992 -19.54890 -18.04764 -17.00481 -16.56664 -15.61205 -15.49360 -15.14291 -14.66601 -14.42085 -14.11801 -13.75560 -13.59492 -13.17781 -12.91780 -12.42372 -12.38797 -12.21423 -11.97979 -11.84929 -11.53136 -11.29597 -11.21986 -10.92896 -10.73862 -10.58916 -10.17125 -9.93190 -9.66841 -9.31708 -8.68176 -8.44851 -8.00735 -7.62738 -6.05649 -4.10596 1.18675 1.36574 2.23683 3.12065 3.29687 3.36879 3.41738 3.52808 3.93717 4.36318 4.49893 4.75718 4.90542 5.07179 5.26975 5.28636 5.37907 5.47531 5.53501 5.65631 5.80226 5.85210 5.89356 6.06646 6.19837 6.33135 6.46533 6.55244 6.75610 7.10384 7.30675 7.45287 7.61231 7.91613 8.20516 8.50493 8.89726 9.16672 9.54860 11.02284 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.021015 B = 0.004416 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.056317 B = 6338.493911 C = 7323.852261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.107 4.107 3 C -0.092 4.092 4 C -0.149 4.149 5 C 0.187 3.813 6 N -0.696 5.696 7 C 0.696 3.304 8 O -0.565 6.565 9 N -0.611 5.611 10 C 0.083 3.917 11 C 0.259 3.741 12 C -0.528 4.528 13 H 0.057 0.943 14 C 0.062 3.938 15 N -0.894 5.894 16 Si 0.898 3.102 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.274 1.274 20 C -0.110 4.110 21 C -0.016 4.016 22 Cl -0.070 7.070 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.131 0.869 27 H 0.128 0.872 28 H 0.403 0.597 29 H 0.046 0.954 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.035 0.965 33 H 0.046 0.954 34 H 0.264 0.736 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.602 13.301 -6.277 20.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.109 4.109 3 C -0.110 4.110 4 C -0.170 4.170 5 C 0.090 3.910 6 N -0.345 5.345 7 C 0.398 3.602 8 O -0.441 6.441 9 N -0.346 5.346 10 C -0.061 4.061 11 C 0.140 3.860 12 C -0.567 4.567 13 H 0.075 0.925 14 C -0.140 4.140 15 N -0.533 5.533 16 Si 0.726 3.274 17 H -0.207 1.207 18 H -0.210 1.210 19 H -0.199 1.199 20 C -0.131 4.131 21 C -0.043 4.043 22 Cl -0.041 7.041 23 H 0.089 0.911 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.149 0.851 27 H 0.146 0.854 28 H 0.241 0.759 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -13.865 12.338 -5.689 19.412 hybrid contribution 0.684 -0.558 -0.840 1.218 sum -13.181 11.781 -6.528 18.845 Atomic orbital electron populations 1.20787 0.90617 1.02988 1.02552 1.19655 0.96513 0.91393 1.03315 1.20645 0.93170 0.96915 1.00303 1.20930 0.94397 0.96601 1.05047 1.17361 0.82508 0.92981 0.98163 1.42972 1.03968 1.33100 1.54509 1.15949 0.82567 0.81904 0.79806 1.90905 1.67022 1.35080 1.51109 1.47514 1.03232 1.28315 1.55513 1.21604 0.98547 0.90006 0.95931 1.19275 0.90839 0.84032 0.91850 1.21444 1.35627 1.03441 0.96213 0.92462 1.24923 0.95741 0.98134 0.95218 1.69928 1.39100 1.30621 1.13670 0.86493 0.78564 0.81585 0.80765 1.20652 1.21044 1.19894 1.21346 0.91787 0.99920 1.00064 1.20608 0.91981 0.86528 1.05166 1.98348 1.76398 1.32505 1.96844 0.91092 0.91498 0.91108 0.85112 0.85379 0.75931 0.93557 0.90176 0.93175 0.94698 0.93600 0.92668 0.82599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 9.61 36.01 0.35 -0.70 16 2 C -0.11 -1.30 5.89 -104.55 -0.62 -1.92 16 3 C -0.09 -0.99 9.69 -39.62 -0.38 -1.37 16 4 C -0.15 -1.76 9.97 -39.39 -0.39 -2.15 16 5 C 0.19 2.88 6.30 -83.69 -0.53 2.35 16 6 N -0.70 -11.03 5.22 -14.23 -0.07 -11.11 16 7 C 0.70 14.68 8.12 -86.91 -0.71 13.97 16 8 O -0.57 -14.35 13.36 5.29 0.07 -14.28 16 9 N -0.61 -12.78 2.86 -188.74 -0.54 -13.32 16 10 C 0.08 1.25 10.24 59.85 0.61 1.86 16 11 C 0.26 6.72 5.16 -5.19 -0.03 6.69 16 12 C -0.53 -14.89 9.39 -34.44 -0.32 -15.22 16 13 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 14 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 15 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 16 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 20 C -0.11 -1.89 8.48 -39.36 -0.33 -2.22 16 21 C -0.02 -0.23 6.31 -39.52 -0.25 -0.48 16 22 Cl -0.07 -0.99 27.28 -51.86 -1.41 -2.41 16 23 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 25 H 0.07 0.67 6.89 -51.93 -0.36 0.31 16 26 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 27 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 28 H 0.40 4.91 6.52 -40.82 -0.27 4.65 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 31 H 0.05 0.59 6.30 -51.93 -0.33 0.26 16 32 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 33 H 0.05 1.35 7.42 -51.93 -0.39 0.96 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.16 3.19 6.22 -52.49 -0.33 2.86 16 LS Contribution 313.57 15.07 4.73 4.73 Total: -1.00 -33.07 313.57 -8.37 -41.44 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -4.16 Total: 1.36 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -2.70 Total: 2.48 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: 0.12 Total: -50.17 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: 0.07 Total: -14.28 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.41 Total: -2.41 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.07 -8.37 -41.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035660938.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.749 kcal (2) G-P(sol) polarization free energy of solvation -33.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds