Wall clock time and date at job start Tue Mar 31 2020 06:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38283 * 119.93747 * 2 1 4 4 C 1.38091 * 120.07977 * 180.23930 * 3 2 1 5 5 C 1.38894 * 119.95764 * 359.46037 * 4 3 2 6 6 N 1.39945 * 120.06197 * 180.25255 * 5 4 3 7 7 C 1.34783 * 119.99583 * 144.91211 * 6 5 4 8 8 O 1.21590 * 120.00064 * 4.59256 * 7 6 5 9 9 N 1.34776 * 119.99914 * 184.58978 * 7 6 5 10 10 C 1.46502 * 119.99925 * 0.02562 * 9 7 6 11 11 C 1.46499 * 119.99973 * 179.97438 * 9 7 6 12 12 C 1.50706 * 109.46777 * 90.00495 * 11 9 7 13 13 H 1.07999 * 119.99774 * 359.97438 * 12 11 9 14 14 C 1.37877 * 119.99541 * 180.02562 * 12 11 9 15 15 N 1.31513 * 120.00269 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99535 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47249 * 89.99815 * 16 14 12 18 18 H 1.48499 * 109.47147 * 209.99689 * 16 14 12 19 19 H 1.48499 * 109.47116 * 329.99630 * 16 14 12 20 20 C 1.38821 * 119.87591 * 0.28342 * 5 4 3 21 21 C 1.38254 * 119.91314 * 359.97438 * 20 5 4 22 22 Cl 1.73606 * 119.97678 * 179.97438 * 21 20 5 23 23 H 1.09004 * 109.47037 * 270.27650 * 1 2 3 24 24 H 1.08998 * 109.47093 * 30.27445 * 1 2 3 25 25 H 1.08999 * 109.47398 * 150.27848 * 1 2 3 26 26 H 1.07997 * 119.95831 * 359.97438 * 3 2 1 27 27 H 1.08002 * 120.01805 * 179.73947 * 4 3 2 28 28 H 0.96993 * 120.00260 * 324.92028 * 6 5 4 29 29 H 1.09000 * 109.47129 * 89.99711 * 10 9 7 30 30 H 1.08998 * 109.46762 * 209.99378 * 10 9 7 31 31 H 1.08998 * 109.46941 * 329.99991 * 10 9 7 32 32 H 1.09005 * 109.47313 * 210.00193 * 11 9 7 33 33 H 1.08992 * 109.47474 * 330.00674 * 11 9 7 34 34 H 0.96999 * 119.99616 * 180.02562 * 15 14 12 35 35 H 1.07994 * 120.04377 * 179.97438 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5781 1.2018 -0.0050 5 6 4.2747 0.0001 0.0013 6 7 5.6741 0.0011 0.0016 7 6 6.3484 -0.9501 0.6776 8 8 5.7439 -1.8565 1.2175 9 7 7.6929 -0.8967 0.7552 10 6 8.4213 0.1956 0.1052 11 6 8.4258 -1.9304 1.4905 12 6 8.7765 -3.0589 0.5552 13 1 8.4824 -3.0110 -0.4828 14 6 9.4718 -4.1528 1.0252 15 7 9.8295 -4.2112 2.2894 16 14 9.9058 -5.5519 -0.1339 17 1 11.2294 -5.2888 -0.7537 18 1 9.9601 -6.8262 0.6268 19 1 8.8731 -5.6532 -1.1962 20 6 3.5801 -1.2018 0.0067 21 6 2.1975 -1.1992 0.0063 22 17 1.3272 -2.7013 0.0123 23 1 -0.3633 0.0050 1.0277 24 1 -0.3633 0.8875 -0.5181 25 1 -0.3634 -0.8924 -0.5095 26 1 1.6555 2.1326 -0.0004 27 1 4.1160 2.1382 -0.0092 28 1 6.1587 0.6863 -0.4845 29 1 8.5301 1.0257 0.8032 30 1 9.4075 -0.1555 -0.1984 31 1 7.8681 0.5293 -0.7727 32 1 9.3398 -1.5035 1.9035 33 1 7.8037 -2.3101 2.3008 34 1 10.3190 -4.9806 2.6198 35 1 4.1190 -2.1377 0.0112 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035660938.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:00 Heat of formation + Delta-G solvation = -25.684386 kcal Electronic energy + Delta-G solvation = -19463.420263 eV Core-core repulsion = 16293.682271 eV Total energy + Delta-G solvation = -3169.737993 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.73072 -39.99331 -37.55064 -36.76187 -36.00181 -34.70234 -32.48526 -31.71885 -29.76410 -27.74512 -26.92940 -24.92282 -23.98556 -22.44603 -21.03262 -19.42312 -18.69516 -18.39530 -16.97407 -16.87303 -16.42658 -16.32122 -15.85577 -15.20098 -15.09258 -14.81557 -14.57425 -14.38938 -13.91593 -13.51010 -13.44594 -13.21614 -13.17748 -12.88248 -12.78132 -12.65130 -12.53057 -12.30405 -12.20304 -11.81764 -11.74806 -11.19662 -10.93731 -10.64481 -9.77443 -9.55673 -8.95315 -8.22755 -6.37700 0.14543 0.30024 1.14605 1.35215 1.38655 1.48397 1.70684 2.11280 2.37755 2.71294 3.03109 3.07848 3.86922 3.96163 4.16421 4.26051 4.31346 4.46938 4.64655 4.72290 4.81528 4.85119 4.86357 4.96186 5.10227 5.17162 5.25852 5.31677 5.46149 5.51369 5.53725 5.76949 5.95737 6.04542 6.05646 6.70876 7.02202 7.29413 7.59590 8.83672 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.021015 B = 0.004416 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.056317 B = 6338.493911 C = 7323.852261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.101 4.101 3 C -0.080 4.080 4 C -0.129 4.129 5 C 0.158 3.842 6 N -0.673 5.673 7 C 0.690 3.310 8 O -0.620 6.620 9 N -0.619 5.619 10 C 0.077 3.923 11 C 0.276 3.724 12 C -0.544 4.544 13 H 0.051 0.949 14 C 0.010 3.990 15 N -0.927 5.927 16 Si 0.966 3.034 17 H -0.261 1.261 18 H -0.281 1.281 19 H -0.277 1.277 20 C -0.141 4.141 21 C -0.034 4.034 22 Cl -0.077 7.077 23 H 0.079 0.921 24 H 0.097 0.903 25 H 0.064 0.936 26 H 0.178 0.822 27 H 0.167 0.833 28 H 0.423 0.577 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.032 0.968 33 H -0.001 1.001 34 H 0.268 0.732 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.635 16.191 -7.863 23.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.103 4.103 3 C -0.098 4.098 4 C -0.150 4.150 5 C 0.062 3.938 6 N -0.325 5.325 7 C 0.392 3.608 8 O -0.500 6.500 9 N -0.353 5.353 10 C -0.065 4.065 11 C 0.154 3.846 12 C -0.582 4.582 13 H 0.069 0.931 14 C -0.189 4.189 15 N -0.567 5.567 16 Si 0.790 3.210 17 H -0.185 1.185 18 H -0.206 1.206 19 H -0.202 1.202 20 C -0.163 4.163 21 C -0.061 4.061 22 Cl -0.048 7.048 23 H 0.097 0.903 24 H 0.116 0.884 25 H 0.083 0.917 26 H 0.195 0.805 27 H 0.184 0.816 28 H 0.264 0.736 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.049 0.951 33 H 0.017 0.983 34 H 0.076 0.924 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -14.900 15.306 -7.324 22.581 hybrid contribution 0.892 -1.368 -0.338 1.668 sum -14.007 13.938 -7.662 21.194 Atomic orbital electron populations 1.20877 0.88339 1.04249 1.03442 1.20121 0.98214 0.90719 1.01225 1.21216 0.92854 0.98002 0.97761 1.21327 0.94996 0.96301 1.02347 1.17641 0.81998 0.93846 1.00336 1.42551 1.04344 1.32053 1.53560 1.16158 0.82527 0.82241 0.79864 1.90874 1.68203 1.37534 1.53399 1.47365 1.03564 1.28762 1.55644 1.21923 0.98152 0.88738 0.97661 1.18706 0.89962 0.85066 0.90858 1.21709 1.35694 1.04646 0.96195 0.93083 1.25812 0.95557 1.00713 0.96846 1.70041 1.39700 1.31554 1.15366 0.85442 0.78865 0.78169 0.78479 1.18549 1.20632 1.20173 1.21111 0.92989 0.99105 1.03082 1.20774 0.91328 0.87524 1.06522 1.98334 1.76229 1.33314 1.96950 0.90252 0.88434 0.91712 0.80473 0.81553 0.73634 0.90706 0.90772 0.89469 0.95053 0.98331 0.92356 0.87248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.73 9.61 71.24 0.68 -1.05 16 2 C -0.10 -2.20 5.89 -19.82 -0.12 -2.32 16 3 C -0.08 -1.36 9.69 22.25 0.22 -1.14 16 4 C -0.13 -2.57 9.97 22.39 0.22 -2.34 16 5 C 0.16 4.73 6.30 38.14 0.24 4.97 16 6 N -0.67 -20.91 5.22 -317.18 -1.65 -22.56 16 7 C 0.69 30.09 8.12 179.05 1.45 31.55 16 8 O -0.62 -33.75 13.36 -4.00 -0.05 -33.80 16 9 N -0.62 -26.44 2.86 -869.30 -2.48 -28.93 16 10 C 0.08 2.19 10.24 127.77 1.31 3.50 16 11 C 0.28 14.99 5.16 85.64 0.44 15.43 16 12 C -0.54 -31.71 9.39 25.60 0.24 -31.47 16 13 H 0.05 2.97 7.81 -2.91 -0.02 2.94 16 14 C 0.01 0.58 5.46 84.65 0.46 1.04 16 15 N -0.93 -56.44 13.29 21.45 0.28 -56.16 16 16 Si 0.97 45.58 29.54 68.60 2.03 47.60 16 17 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 18 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 19 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 20 C -0.14 -5.08 8.48 22.41 0.19 -4.89 16 21 C -0.03 -1.03 6.31 22.31 0.14 -0.89 16 22 Cl -0.08 -2.27 27.28 -2.72 -0.07 -2.35 16 23 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 24 H 0.10 0.93 8.09 -2.39 -0.02 0.91 16 25 H 0.06 1.10 6.89 -2.39 -0.02 1.08 16 26 H 0.18 1.46 8.06 -2.91 -0.02 1.44 16 27 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 28 H 0.42 9.23 6.52 -92.71 -0.60 8.62 16 29 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.07 2.21 8.07 -2.39 -0.02 2.19 16 31 H 0.09 1.79 6.30 -2.39 -0.02 1.78 16 32 H 0.03 1.70 8.07 -2.38 -0.02 1.68 16 33 H 0.00 -0.09 7.42 -2.39 -0.02 -0.11 16 34 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 35 H 0.11 4.94 6.22 -2.91 -0.02 4.93 16 Total: -1.00 -78.44 313.57 4.04 -74.39 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 0.51 Total: 9.40 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: 5.49 Total: 12.40 kcal Atomic # 7 Polarization: -103.79 SS G_CDS: -3.85 Total: -107.64 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -0.05 Total: -33.80 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Atomic # 17 Polarization: -2.27 SS G_CDS: -0.07 Total: -2.35 kcal Total: -78.44 4.04 -74.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035660938.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.710 kcal (2) G-P(sol) polarization free energy of solvation -78.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds