Wall clock time and date at job start Tue Mar 31 2020 05:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46506 * 120.00270 * 2 1 4 4 C 1.50697 * 109.46592 * 269.99943 * 3 2 1 5 5 H 1.07994 * 120.00494 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99903 * 180.02562 * 4 3 2 7 7 N 1.31521 * 119.99748 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00413 * 179.97438 * 6 4 3 9 9 H 1.48494 * 109.47041 * 89.99534 * 8 6 4 10 10 H 1.48499 * 109.47407 * 209.99963 * 8 6 4 11 11 H 1.48501 * 109.46942 * 329.99744 * 8 6 4 12 12 C 1.34777 * 120.00145 * 179.97438 * 2 1 3 13 13 O 1.21571 * 120.00351 * 184.87126 * 12 2 1 14 14 C 1.47696 * 119.99649 * 4.60154 * 12 2 1 15 15 C 1.39656 * 120.16412 * 311.75805 * 14 12 2 16 16 C 1.37865 * 119.87651 * 179.79484 * 15 14 12 17 17 N 1.48021 * 119.89275 * 180.20807 * 16 15 14 18 18 O 1.21791 * 120.00161 * 180.27205 * 17 16 15 19 19 O 1.21806 * 119.99615 * 0.27684 * 17 16 15 20 20 C 1.38459 * 120.21310 * 0.48029 * 16 15 14 21 21 C 1.38200 * 120.34367 * 359.75024 * 20 16 15 22 22 C 1.38317 * 120.11621 * 0.02562 * 21 20 16 23 23 F 1.35101 * 120.11149 * 179.97438 * 22 21 20 24 24 H 1.09001 * 109.47489 * 264.91130 * 1 2 3 25 25 H 1.09003 * 109.47073 * 24.90869 * 1 2 3 26 26 H 1.08995 * 109.47637 * 144.90669 * 1 2 3 27 27 H 1.08995 * 109.47022 * 29.99564 * 3 2 1 28 28 H 1.09000 * 109.47198 * 149.99724 * 3 2 1 29 29 H 0.97002 * 120.00123 * 179.97438 * 7 6 4 30 30 H 1.08003 * 120.06589 * 0.02562 * 15 14 12 31 31 H 1.08002 * 119.82511 * 179.72700 * 20 16 15 32 32 H 1.08001 * 119.94129 * 180.02562 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7036 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1269 2.8773 -1.6729 7 7 3.5543 3.6175 -0.6732 8 14 3.4389 3.4161 -3.4340 9 1 2.3094 4.2593 -3.9011 10 1 4.6996 4.1985 -3.4964 11 1 3.5559 2.2188 -4.3046 12 6 2.1388 -1.1672 0.0005 13 8 3.3513 -1.1691 0.0899 14 6 1.4039 -2.4442 -0.1015 15 6 0.2968 -2.6840 0.7154 16 6 -0.3874 -3.8764 0.6122 17 7 -1.5636 -4.1290 1.4746 18 8 -2.1665 -5.1837 1.3886 19 8 -1.9285 -3.2820 2.2703 20 6 0.0254 -4.8407 -0.2916 21 6 1.1226 -4.6148 -1.1010 22 6 1.8166 -3.4216 -1.0123 23 9 2.8894 -3.2011 -1.8032 24 1 -0.3634 -0.0912 1.0236 25 1 -0.3633 0.9321 -0.4328 26 1 -0.3634 -0.8408 -0.5908 27 1 1.6084 2.0284 0.5137 28 1 3.1499 1.1384 0.5139 29 1 4.0319 4.4430 -0.8505 30 1 -0.0250 -1.9352 1.4241 31 1 -0.5126 -5.7743 -0.3641 32 1 1.4387 -5.3713 -1.8040 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037286124.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:21 Heat of formation + Delta-G solvation = -66.893607 kcal Electronic energy + Delta-G solvation = -21766.686802 eV Core-core repulsion = 18030.992374 eV Total energy + Delta-G solvation = -3735.694428 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.085 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.43638 -43.32887 -41.42467 -39.65275 -37.71625 -36.87404 -34.89546 -33.08914 -32.88092 -29.82712 -27.84780 -27.46321 -26.02157 -24.52746 -23.56425 -21.51094 -19.88881 -19.75027 -19.02296 -18.76089 -18.66812 -18.08536 -17.93242 -17.30177 -16.96836 -16.26671 -16.15784 -15.65403 -14.87112 -14.82890 -14.70127 -14.34547 -13.98077 -13.95225 -13.60700 -13.19851 -13.02167 -12.89471 -12.67588 -12.59393 -12.38377 -12.29406 -12.28523 -11.80538 -11.15380 -10.71065 -10.65763 -10.60541 -9.66133 -8.28598 -6.43832 -1.43512 -0.66199 0.03168 0.18854 1.33642 1.37003 1.39784 1.48312 1.82606 2.09992 2.35150 2.58492 2.95759 3.02902 3.14699 3.39690 3.48589 3.82636 4.13278 4.22450 4.32573 4.43228 4.49747 4.54482 4.77294 4.88828 4.95561 5.12785 5.23821 5.39970 5.68845 5.95899 6.40914 6.44640 6.63539 7.01310 7.27781 8.79114 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.024381 B = 0.004666 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.167481 B = 5998.775730 C = 6628.112180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.593 5.593 3 C 0.257 3.743 4 C -0.549 4.549 5 H 0.053 0.947 6 C 0.012 3.988 7 N -0.925 5.925 8 Si 0.968 3.032 9 H -0.262 1.262 10 H -0.280 1.280 11 H -0.273 1.273 12 C 0.542 3.458 13 O -0.575 6.575 14 C -0.169 4.169 15 C 0.006 3.994 16 C -0.067 4.067 17 N 0.034 4.966 18 O -0.138 6.138 19 O -0.192 6.192 20 C 0.012 3.988 21 C -0.128 4.128 22 C 0.184 3.816 23 F -0.122 7.122 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.034 0.966 28 H 0.005 0.995 29 H 0.269 0.731 30 H 0.170 0.830 31 H 0.206 0.794 32 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.911 -18.215 -1.058 21.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.323 5.323 3 C 0.137 3.863 4 C -0.588 4.588 5 H 0.071 0.929 6 C -0.188 4.188 7 N -0.564 5.564 8 Si 0.792 3.208 9 H -0.187 1.187 10 H -0.205 1.205 11 H -0.198 1.198 12 C 0.329 3.671 13 O -0.456 6.456 14 C -0.174 4.174 15 C -0.013 4.013 16 C -0.150 4.150 17 N 0.553 4.447 18 O -0.361 6.361 19 O -0.400 6.400 20 C -0.007 4.007 21 C -0.147 4.147 22 C 0.163 3.837 23 F -0.100 7.100 24 H 0.100 0.900 25 H 0.099 0.901 26 H 0.097 0.903 27 H 0.052 0.948 28 H 0.023 0.977 29 H 0.078 0.922 30 H 0.187 0.813 31 H 0.223 0.777 32 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -9.604 -17.788 -1.362 20.261 hybrid contribution 0.532 1.005 -0.436 1.218 sum -9.071 -16.783 -1.798 19.162 Atomic orbital electron populations 1.22177 0.77763 1.04353 1.02879 1.48109 1.08482 1.06183 1.69534 1.18931 0.91439 0.79416 0.96548 1.21641 1.37510 1.06898 0.92708 0.92870 1.25835 0.94649 0.96264 1.02050 1.70041 1.38523 1.14781 1.33072 0.85407 0.78209 0.78247 0.78926 1.18690 1.20494 1.19814 1.18344 0.86797 0.84201 0.77781 1.90785 1.15491 1.87565 1.51738 1.19850 0.99409 0.96093 1.02081 1.21019 0.89318 0.95712 0.95263 1.21006 0.93027 0.99442 1.01515 1.43572 1.01267 0.99977 0.99920 1.94512 1.54709 1.13656 1.73213 1.94608 1.71373 1.40914 1.33076 1.21454 0.92964 0.98726 0.87534 1.21518 0.94899 0.95706 1.02535 1.18437 0.83720 0.93996 0.87564 1.91621 1.52552 1.94890 1.70940 0.90031 0.90054 0.90262 0.94777 0.97682 0.92200 0.81252 0.77665 0.77342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.08 9.05 127.77 1.16 3.24 16 2 N -0.59 -25.00 2.86 -854.76 -2.44 -27.44 16 3 C 0.26 13.67 5.18 85.63 0.44 14.11 16 4 C -0.55 -31.22 9.39 25.60 0.24 -30.98 16 5 H 0.05 3.00 7.81 -2.91 -0.02 2.97 16 6 C 0.01 0.66 5.46 84.65 0.46 1.13 16 7 N -0.93 -55.10 13.29 21.45 0.28 -54.81 16 8 Si 0.97 44.20 29.54 68.60 2.03 46.22 16 9 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 12 C 0.54 22.79 7.02 86.74 0.61 23.40 16 13 O -0.58 -30.09 16.17 -3.94 -0.06 -30.15 16 14 C -0.17 -4.96 4.92 -20.05 -0.10 -5.06 16 15 C 0.01 0.15 7.27 22.52 0.16 0.31 16 16 C -0.07 -1.23 6.84 36.34 0.25 -0.98 16 17 N 0.03 0.74 4.45 -46.54 -0.21 0.53 16 18 O -0.14 -2.86 18.44 18.90 0.35 -2.51 16 19 O -0.19 -4.84 18.44 18.88 0.35 -4.50 16 20 C 0.01 0.14 9.55 22.31 0.21 0.35 16 21 C -0.13 -1.63 10.01 22.28 0.22 -1.41 16 22 C 0.18 4.53 7.26 22.67 0.16 4.69 16 23 F -0.12 -3.83 16.49 44.97 0.74 -3.09 16 24 H 0.08 1.96 7.04 -2.39 -0.02 1.94 16 25 H 0.08 2.48 8.03 -2.39 -0.02 2.46 16 26 H 0.08 1.95 6.25 -2.39 -0.01 1.94 16 27 H 0.03 1.81 8.07 -2.39 -0.02 1.79 16 28 H 0.01 0.31 7.36 -2.39 -0.02 0.29 16 29 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 30 H 0.17 3.77 5.76 -2.91 -0.02 3.76 16 31 H 0.21 0.87 7.60 -2.91 -0.02 0.85 16 32 H 0.21 0.93 8.06 -2.91 -0.02 0.90 16 Total: -1.00 -75.78 297.21 6.04 -69.74 By element: Atomic # 1 Polarization: -3.98 SS G_CDS: 1.18 Total: -2.80 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: 3.82 Total: 8.80 kcal Atomic # 7 Polarization: -79.35 SS G_CDS: -2.36 Total: -81.72 kcal Atomic # 8 Polarization: -37.79 SS G_CDS: 0.63 Total: -37.16 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.74 Total: -3.09 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -75.78 6.04 -69.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037286124.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.848 kcal (2) G-P(sol) polarization free energy of solvation -75.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds