Wall clock time and date at job start Tue Mar 31 2020 05:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46501 * 119.99798 * 2 1 4 4 C 1.50702 * 109.47091 * 269.99826 * 3 2 1 5 5 H 1.07998 * 119.99725 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99906 * 180.02562 * 4 3 2 7 7 N 1.31510 * 119.99913 * 179.97438 * 6 4 3 8 8 Si 1.86798 * 119.99997 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.47101 * 90.00279 * 8 6 4 10 10 H 1.48498 * 109.47273 * 210.00200 * 8 6 4 11 11 H 1.48506 * 109.47281 * 330.00360 * 8 6 4 12 12 C 1.34775 * 120.00000 * 179.97438 * 2 1 3 13 13 O 1.21548 * 119.99762 * 184.49531 * 12 2 1 14 14 C 1.47853 * 120.00169 * 4.49601 * 12 2 1 15 15 C 1.39565 * 120.13493 * 303.80158 * 14 12 2 16 16 C 1.38168 * 119.82694 * 179.97438 * 15 14 12 17 17 F 1.35104 * 119.95311 * 179.97438 * 16 15 14 18 18 C 1.38587 * 120.08998 * 359.74583 * 16 15 14 19 19 C 1.38297 * 120.27065 * 0.50621 * 18 16 15 20 20 C 1.37982 * 120.17224 * 359.49199 * 19 18 16 21 21 N 1.48019 * 120.05016 * 180.23045 * 20 19 18 22 22 O 1.21803 * 119.99996 * 353.42201 * 21 20 19 23 23 O 1.21799 * 120.00490 * 173.42780 * 21 20 19 24 24 H 1.08996 * 109.47288 * 264.77302 * 1 2 3 25 25 H 1.08996 * 109.47178 * 24.77881 * 1 2 3 26 26 H 1.09004 * 109.46465 * 144.77921 * 1 2 3 27 27 H 1.08998 * 109.46807 * 30.00066 * 3 2 1 28 28 H 1.09000 * 109.46925 * 149.99347 * 3 2 1 29 29 H 0.97003 * 120.00079 * 179.97438 * 7 6 4 30 30 H 1.08001 * 120.08433 * 359.95288 * 15 14 12 31 31 H 1.08008 * 119.86788 * 180.25509 * 18 16 15 32 32 H 1.08006 * 119.91484 * 179.76702 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0982 1.0957 -2.2417 6 6 3.1269 2.8775 -1.6728 7 7 3.3465 3.2569 -2.9127 8 14 3.7338 3.9288 -0.2529 9 1 5.1069 3.5070 0.1237 10 1 3.7497 5.3554 -0.6648 11 1 2.8272 3.7596 0.9111 12 6 2.1389 -1.1672 0.0005 13 8 3.3516 -1.1687 0.0830 14 6 1.4031 -2.4457 -0.0993 15 6 0.4057 -2.7543 0.8269 16 6 -0.2783 -3.9506 0.7273 17 9 -1.2440 -4.2521 1.6228 18 6 0.0216 -4.8396 -0.2926 19 6 1.0128 -4.5402 -1.2094 20 6 1.7027 -3.3486 -1.1204 21 7 2.7596 -3.0286 -2.1061 22 8 3.1041 -3.8643 -2.9225 23 8 3.2848 -1.9297 -2.1009 24 1 -0.3633 -0.0936 1.0233 25 1 -0.3633 0.9330 -0.4307 26 1 -0.3632 -0.8396 -0.5927 27 1 1.6084 2.0283 0.5138 28 1 3.1499 1.1385 0.5139 29 1 3.8234 4.0828 -3.0899 30 1 0.1693 -2.0598 1.6195 31 1 -0.5182 -5.7720 -0.3695 32 1 1.2444 -5.2389 -1.9998 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037669238.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:37 Heat of formation + Delta-G solvation = -34.930270 kcal Electronic energy + Delta-G solvation = -22300.021420 eV Core-core repulsion = 18565.713026 eV Total energy + Delta-G solvation = -3734.308394 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.085 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.60107 -41.97017 -40.03224 -38.35762 -36.14478 -35.15418 -32.74615 -31.89568 -31.79926 -28.55576 -26.65254 -26.04920 -24.44316 -22.91445 -22.07222 -19.90199 -18.96269 -18.36691 -17.71960 -17.26420 -17.04862 -16.77061 -16.33799 -16.16798 -15.59655 -15.04613 -14.63904 -14.13156 -14.03488 -13.84276 -13.22152 -12.99792 -12.61116 -12.37579 -12.24842 -11.98444 -11.55410 -11.18230 -11.01038 -10.74838 -10.63550 -10.53170 -10.20003 -9.84572 -9.67772 -9.54659 -9.36493 -8.55381 -7.88488 -6.04143 -4.03476 -0.34955 0.30126 1.30534 1.52041 2.62577 3.00154 3.25912 3.31605 3.36467 3.39735 3.62463 3.97869 4.15141 4.33260 4.41552 4.42395 4.79351 5.06446 5.21192 5.23753 5.28085 5.36404 5.39096 5.60383 5.89334 5.98555 6.56270 6.59289 6.86286 7.13349 7.59569 7.91828 7.95147 8.44771 8.64702 9.01558 9.54264 11.09235 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.021397 B = 0.005846 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.284741 B = 4788.195572 C = 5678.873923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.582 5.582 3 C 0.217 3.783 4 C -0.528 4.528 5 H 0.078 0.922 6 C 0.075 3.925 7 N -0.893 5.893 8 Si 0.874 3.126 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.267 1.267 12 C 0.546 3.454 13 O -0.495 6.495 14 C -0.018 4.018 15 C -0.132 4.132 16 C 0.148 3.852 17 F -0.120 7.120 18 C -0.146 4.146 19 C -0.030 4.030 20 C -0.022 4.022 21 N 0.013 4.987 22 O -0.183 6.183 23 O -0.076 6.076 24 H 0.050 0.950 25 H 0.086 0.914 26 H 0.054 0.946 27 H 0.034 0.966 28 H 0.041 0.959 29 H 0.265 0.735 30 H 0.164 0.836 31 H 0.161 0.839 32 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.281 -15.261 8.223 20.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.313 5.313 3 C 0.098 3.902 4 C -0.567 4.567 5 H 0.096 0.904 6 C -0.128 4.128 7 N -0.532 5.532 8 Si 0.701 3.299 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.192 1.192 12 C 0.329 3.671 13 O -0.369 6.369 14 C -0.023 4.023 15 C -0.151 4.151 16 C 0.128 3.872 17 F -0.099 7.099 18 C -0.165 4.165 19 C -0.049 4.049 20 C -0.106 4.106 21 N 0.537 4.463 22 O -0.389 6.389 23 O -0.307 6.307 24 H 0.068 0.932 25 H 0.104 0.896 26 H 0.073 0.927 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.181 0.819 31 H 0.179 0.821 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -11.103 -15.343 8.629 20.812 hybrid contribution 0.283 0.580 0.461 0.792 sum -10.820 -14.764 9.090 20.437 Atomic orbital electron populations 1.21822 0.80797 1.03703 1.00317 1.47741 1.06311 1.06611 1.70669 1.19801 0.92538 0.78891 0.98997 1.21268 1.37276 1.07167 0.90949 0.90391 1.24819 0.95172 0.97305 0.95465 1.69893 1.41218 1.23454 1.18593 0.86904 0.80253 0.79867 0.82922 1.19793 1.21093 1.19190 1.17634 0.87273 0.82621 0.79559 1.90854 1.12234 1.85851 1.47940 1.20105 0.93878 0.96059 0.92235 1.21346 0.95499 0.97239 1.01059 1.17752 0.87382 0.93828 0.88253 1.91590 1.59867 1.92978 1.65424 1.21222 0.99517 1.01295 0.94496 1.20844 0.91816 0.93742 0.98470 1.21201 0.96471 0.98129 0.94771 1.43461 1.00960 1.01284 1.00630 1.94478 1.66846 1.44273 1.33288 1.94886 1.53321 1.07445 1.75076 0.93173 0.89568 0.92730 0.94780 0.94061 0.92544 0.81878 0.82137 0.81562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 9.21 59.85 0.55 1.67 16 2 N -0.58 -11.60 2.86 -184.07 -0.53 -12.13 16 3 C 0.22 5.17 4.24 -5.19 -0.02 5.15 16 4 C -0.53 -15.04 9.94 -34.44 -0.34 -15.38 16 5 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 6 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 7 N -0.89 -27.62 13.96 55.43 0.77 -26.84 16 8 Si 0.87 21.32 27.47 -169.99 -4.67 16.65 16 9 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 12 C 0.55 11.07 5.71 -12.33 -0.07 11.00 16 13 O -0.49 -12.11 14.40 -18.65 -0.27 -12.38 16 14 C -0.02 -0.27 4.63 -104.98 -0.49 -0.76 16 15 C -0.13 -1.44 8.01 -39.11 -0.31 -1.76 16 16 C 0.15 1.32 7.29 -39.48 -0.29 1.03 16 17 F -0.12 -1.02 17.26 2.25 0.04 -0.98 16 18 C -0.15 -1.13 10.02 -39.43 -0.40 -1.52 16 19 C -0.03 -0.31 9.54 -39.65 -0.38 -0.68 16 20 C -0.02 -0.34 6.86 -79.55 -0.55 -0.88 16 21 N 0.01 0.25 4.45 34.16 0.15 0.40 16 22 O -0.18 -3.40 18.46 -29.46 -0.54 -3.94 16 23 O -0.08 -1.82 15.04 -37.05 -0.56 -2.38 16 24 H 0.05 0.55 7.41 -51.93 -0.38 0.16 16 25 H 0.09 1.28 8.03 -51.93 -0.42 0.86 16 26 H 0.05 0.70 6.54 -51.93 -0.34 0.36 16 27 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 28 H 0.04 1.04 6.79 -51.93 -0.35 0.69 16 29 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 30 H 0.16 1.49 7.04 -52.49 -0.37 1.12 16 31 H 0.16 0.69 8.06 -52.48 -0.42 0.26 16 32 H 0.17 1.36 7.62 -52.48 -0.40 0.96 16 LS Contribution 290.56 15.07 4.38 4.38 Total: -1.00 -35.32 290.56 -6.25 -41.58 By element: Atomic # 1 Polarization: -1.65 SS G_CDS: -2.65 Total: -4.30 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -2.39 Total: -0.06 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.40 Total: -38.57 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -1.37 Total: -18.69 kcal Atomic # 9 Polarization: -1.02 SS G_CDS: 0.04 Total: -0.98 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -35.32 -6.25 -41.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037669238.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.648 kcal (2) G-P(sol) polarization free energy of solvation -35.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds