Wall clock time and date at job start Tue Mar 31 2020 05:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46501 * 120.00020 * 2 1 4 4 C 1.50705 * 109.47164 * 270.00394 * 3 2 1 5 5 H 1.07998 * 119.99955 * 359.97438 * 4 3 2 6 6 C 1.37869 * 119.99836 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00582 * 359.97438 * 6 4 3 8 8 Si 1.86810 * 119.99719 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47002 * 90.00211 * 8 6 4 10 10 H 1.48502 * 109.47012 * 209.99781 * 8 6 4 11 11 H 1.48498 * 109.47063 * 329.99970 * 8 6 4 12 12 C 1.34777 * 119.99756 * 180.02562 * 2 1 3 13 13 O 1.21573 * 119.99468 * 185.04567 * 12 2 1 14 14 C 1.47684 * 120.00211 * 5.04338 * 12 2 1 15 15 C 1.39661 * 120.16885 * 306.83287 * 14 12 2 16 16 C 1.37851 * 119.87960 * 179.97438 * 15 14 12 17 17 C 1.38462 * 120.22065 * 359.97438 * 16 15 14 18 18 N 1.48012 * 119.83227 * 180.02562 * 17 16 15 19 19 O 1.21797 * 120.00210 * 0.02562 * 18 17 16 20 20 O 1.21808 * 120.00138 * 180.02562 * 18 17 16 21 21 C 1.38206 * 120.33802 * 359.75143 * 17 16 15 22 22 C 1.38324 * 120.11600 * 0.50166 * 21 17 16 23 23 F 1.35101 * 120.11139 * 179.76810 * 22 21 17 24 24 H 1.09006 * 109.47326 * 305.44241 * 1 2 3 25 25 H 1.08999 * 109.47559 * 65.43960 * 1 2 3 26 26 H 1.08995 * 109.47262 * 185.44656 * 1 2 3 27 27 H 1.09003 * 109.46825 * 30.00030 * 3 2 1 28 28 H 1.08993 * 109.47337 * 150.00374 * 3 2 1 29 29 H 0.96998 * 120.00427 * 179.97438 * 7 6 4 30 30 H 1.08001 * 120.06154 * 0.02562 * 15 14 12 31 31 H 1.08002 * 119.89598 * 180.02562 * 16 15 14 32 32 H 1.07996 * 119.94371 * 180.27824 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0980 1.0959 -2.2417 6 6 3.1268 2.8775 -1.6727 7 7 3.5542 3.6176 -0.6732 8 14 3.4386 3.4164 -3.4340 9 1 2.3091 4.2597 -3.9010 10 1 4.6993 4.1989 -3.4964 11 1 3.5556 2.2191 -4.3047 12 6 2.1388 -1.1672 -0.0005 13 8 3.3510 -1.1692 0.0921 14 6 1.4047 -2.4437 -0.1135 15 6 0.3566 -2.7306 0.7638 16 6 -0.3250 -3.9236 0.6526 17 6 0.0257 -4.8381 -0.3262 18 7 -0.7122 -6.1162 -0.4382 19 8 -1.6258 -6.3612 0.3292 20 8 -0.4060 -6.9230 -1.2978 21 6 1.0577 -4.5610 -1.2027 22 6 1.7545 -3.3705 -1.1004 23 9 2.7663 -3.1018 -1.9543 24 1 -0.3634 0.5960 0.8373 25 1 -0.3634 0.4271 -0.9347 26 1 -0.3633 -1.0230 0.0975 27 1 1.6084 2.0284 0.5139 28 1 3.1499 1.1384 0.5137 29 1 4.0317 4.4431 -0.8504 30 1 0.0800 -2.0187 1.5274 31 1 -1.1359 -4.1456 1.3306 32 1 1.3230 -5.2769 -1.9666 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042265945.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:26 Heat of formation + Delta-G solvation = -41.190238 kcal Electronic energy + Delta-G solvation = -21575.149523 eV Core-core repulsion = 17840.569677 eV Total energy + Delta-G solvation = -3734.579846 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.085 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.23844 -42.47468 -40.25410 -38.41615 -36.85538 -35.21546 -33.09401 -32.22787 -31.40258 -28.28351 -27.27179 -26.00951 -23.79300 -23.60262 -22.46125 -19.89160 -19.60250 -19.01977 -17.83875 -17.26357 -16.92019 -16.75110 -16.64868 -16.10318 -15.54914 -14.89763 -14.76816 -14.45137 -14.09961 -13.47925 -13.20286 -12.86470 -12.69848 -12.31942 -12.24562 -11.96095 -11.82983 -11.46684 -11.40754 -11.39522 -11.03037 -10.74040 -10.31340 -9.96583 -9.80256 -9.51238 -9.41558 -8.56519 -7.97249 -6.18179 -4.24097 -0.65777 0.38655 0.87195 0.99665 2.53049 2.97755 3.22454 3.29862 3.34172 3.44150 3.56504 3.91706 4.12984 4.30672 4.36544 4.42119 4.67762 5.03509 5.16639 5.21118 5.26742 5.28628 5.40266 5.69621 5.80120 5.98694 6.08224 6.75292 7.16531 7.25812 7.33525 7.76276 7.99322 8.04444 8.51424 8.80223 9.41739 10.90086 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.030270 B = 0.004130 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.788793 B = 6777.946654 C = 7133.690968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.584 5.584 3 C 0.244 3.756 4 C -0.534 4.534 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.892 5.892 8 Si 0.899 3.101 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.273 1.273 12 C 0.541 3.459 13 O -0.513 6.513 14 C -0.093 4.093 15 C -0.065 4.065 16 C -0.071 4.071 17 C -0.011 4.011 18 N 0.028 4.972 19 O -0.150 6.150 20 O -0.155 6.155 21 C -0.097 4.097 22 C 0.150 3.850 23 F -0.102 7.102 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.039 0.961 28 H 0.049 0.951 29 H 0.265 0.735 30 H 0.167 0.833 31 H 0.165 0.835 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.082 -13.453 2.881 17.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.315 5.315 3 C 0.126 3.874 4 C -0.573 4.573 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.531 5.531 8 Si 0.727 3.273 9 H -0.205 1.205 10 H -0.209 1.209 11 H -0.198 1.198 12 C 0.324 3.676 13 O -0.389 6.389 14 C -0.098 4.098 15 C -0.084 4.084 16 C -0.090 4.090 17 C -0.094 4.094 18 N 0.549 4.451 19 O -0.368 6.368 20 O -0.371 6.371 21 C -0.117 4.117 22 C 0.129 3.871 23 F -0.080 7.080 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.184 0.816 31 H 0.183 0.817 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -8.921 -12.585 2.992 15.714 hybrid contribution 0.122 0.120 -1.253 1.265 sum -8.800 -12.465 1.739 15.357 Atomic orbital electron populations 1.22086 0.81048 1.01798 1.03030 1.48145 1.06546 1.07337 1.69502 1.19442 0.92729 0.77166 0.98055 1.21369 1.37260 1.06687 0.91967 0.92373 1.24918 0.95050 0.96226 0.97664 1.69916 1.37943 1.14327 1.30866 0.86470 0.77830 0.78694 0.84327 1.20498 1.20908 1.19804 1.17748 0.87280 0.82818 0.79725 1.90854 1.12701 1.86298 1.49084 1.21008 0.96578 0.96870 0.95333 1.21305 0.92488 0.96063 0.98569 1.21019 1.00268 0.91549 0.96171 1.20831 0.98769 0.87193 1.02626 1.43503 1.00024 1.02066 0.99460 1.94548 1.21109 1.82273 1.38858 1.94570 1.71043 1.42662 1.28837 1.20820 0.93903 0.97141 0.99847 1.17174 0.87554 0.92596 0.89763 1.91678 1.55759 1.93448 1.67113 0.91505 0.91664 0.91404 0.94282 0.93276 0.92492 0.81564 0.81714 0.81224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.87 10.03 59.85 0.60 1.47 16 2 N -0.58 -11.34 2.86 -184.14 -0.53 -11.86 16 3 C 0.24 6.00 5.24 -5.19 -0.03 5.98 16 4 C -0.53 -14.55 9.39 -34.44 -0.32 -14.87 16 5 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 7 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 8 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.54 10.51 6.92 -12.40 -0.09 10.42 16 13 O -0.51 -12.36 16.38 5.30 0.09 -12.28 16 14 C -0.09 -1.32 5.05 -104.91 -0.53 -1.85 16 15 C -0.07 -0.63 7.34 -39.19 -0.29 -0.92 16 16 C -0.07 -0.61 9.53 -39.64 -0.38 -0.99 16 17 C -0.01 -0.12 6.85 -79.88 -0.55 -0.67 16 18 N 0.03 0.34 4.45 34.00 0.15 0.49 16 19 O -0.15 -1.81 18.43 -29.46 -0.54 -2.35 16 20 O -0.15 -1.97 18.43 -29.46 -0.54 -2.51 16 21 C -0.10 -1.08 9.52 -39.56 -0.38 -1.46 16 22 C 0.15 2.08 7.27 -38.95 -0.28 1.80 16 23 F -0.10 -1.70 16.63 2.25 0.04 -1.66 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.07 0.70 3.91 -51.93 -0.20 0.49 16 27 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 28 H 0.05 1.36 7.36 -51.93 -0.38 0.98 16 29 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.17 1.22 7.09 -52.49 -0.37 0.85 16 31 H 0.17 1.01 7.59 -52.49 -0.40 0.61 16 32 H 0.17 1.61 7.59 -52.49 -0.40 1.21 16 LS Contribution 297.97 15.07 4.49 4.49 Total: -1.00 -32.41 297.97 -6.03 -38.44 By element: Atomic # 1 Polarization: -2.17 SS G_CDS: -2.56 Total: -4.73 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -2.34 Total: 0.59 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.36 Total: -36.22 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -1.00 Total: -17.14 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.41 -6.03 -38.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042265945.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.752 kcal (2) G-P(sol) polarization free energy of solvation -32.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds