Wall clock time and date at job start Tue Mar 31 2020 05:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47096 * 2 1 4 4 C 1.33327 * 120.00208 * 264.24625 * 3 2 1 5 5 H 1.08000 * 120.00385 * 147.06802 * 4 3 2 6 6 C 1.46788 * 119.99954 * 327.06320 * 4 3 2 7 7 N 1.29315 * 120.00012 * 157.69669 * 6 4 3 8 8 Si 1.86804 * 120.00072 * 337.70336 * 6 4 3 9 9 H 1.48507 * 109.46984 * 89.12220 * 8 6 4 10 10 H 1.48500 * 109.47099 * 209.12134 * 8 6 4 11 11 H 1.48492 * 109.46934 * 329.12271 * 8 6 4 12 12 C 1.34776 * 119.99971 * 84.24669 * 3 2 1 13 13 O 1.21473 * 120.00199 * 184.65625 * 12 3 2 14 14 C 1.47705 * 119.99987 * 4.65618 * 12 3 2 15 15 C 1.39652 * 120.14226 * 59.68989 * 14 12 3 16 16 C 1.38142 * 119.82065 * 179.97438 * 15 14 12 17 17 F 1.35096 * 119.95376 * 179.97438 * 16 15 14 18 18 C 1.38617 * 120.09931 * 359.74825 * 16 15 14 19 19 C 1.38324 * 120.28410 * 0.50930 * 18 16 15 20 20 C 1.37964 * 120.17644 * 359.49099 * 19 18 16 21 21 N 1.48023 * 120.05113 * 180.23315 * 20 19 18 22 22 O 1.31706 * 119.99613 * 6.75910 * 21 20 19 23 23 O 1.31698 * 120.00311 * 186.76175 * 21 20 19 24 24 H 1.08998 * 109.47063 * 299.99295 * 1 2 3 25 25 H 1.08998 * 109.47532 * 59.99853 * 1 2 3 26 26 H 1.09006 * 109.46798 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46863 * 239.99960 * 2 1 3 28 28 H 1.08998 * 109.47532 * 120.00147 * 2 1 3 29 29 H 0.96995 * 120.00226 * 180.02562 * 7 6 4 30 30 H 1.08000 * 120.09480 * 359.95724 * 15 14 12 31 31 H 1.07999 * 119.86084 * 180.25697 * 18 16 15 32 32 H 1.08001 * 119.91524 * 179.77062 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3497 1.9712 -1.1488 5 1 2.1964 3.0328 -1.2746 6 6 2.9229 1.1778 -2.2427 7 7 2.8487 1.6068 -3.4604 8 14 3.7593 -0.4518 -1.8759 9 1 2.7544 -1.5444 -1.9172 10 1 4.8113 -0.7081 -2.8922 11 1 4.3771 -0.3983 -0.5266 12 6 2.1326 2.0555 1.1613 13 8 2.4562 3.2263 1.1545 14 6 1.8644 1.3709 2.4423 15 6 2.6166 0.2537 2.8114 16 6 2.3605 -0.3812 4.0112 17 9 3.0862 -1.4625 4.3706 18 6 1.3630 0.0924 4.8492 19 6 0.6117 1.1954 4.4855 20 6 0.8577 1.8384 3.2898 21 7 0.0556 3.0216 2.9057 22 8 -0.8010 3.5420 3.7602 23 8 0.1983 3.5540 1.7097 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.2272 1.0824 -4.1832 30 1 3.3964 -0.1132 2.1604 31 1 1.1687 -0.4044 5.7883 32 1 -0.1665 1.5571 5.1412 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049497.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:18 Heat of formation + Delta-G solvation = 5.946317 kcal Electronic energy + Delta-G solvation = -22776.545116 eV Core-core repulsion = 19044.009264 eV Total energy + Delta-G solvation = -3732.535852 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.085 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -49.31059 -40.39519 -38.44853 -37.53598 -35.40750 -33.72517 -32.95415 -31.61700 -31.27144 -30.13228 -26.50357 -25.35005 -23.76759 -23.07663 -22.20200 -20.05413 -18.22877 -17.75823 -17.61635 -17.20048 -16.55948 -16.18225 -15.91889 -15.76990 -15.28830 -14.62343 -14.35711 -14.10628 -13.69012 -13.60988 -13.32983 -12.88498 -12.81387 -12.58054 -12.11001 -11.88899 -11.75338 -11.25499 -11.07978 -10.70641 -10.45061 -10.37985 -10.12131 -10.01908 -9.50027 -9.41081 -9.27156 -8.73254 -8.24355 -6.96960 -3.94695 -0.48512 0.64776 1.17911 1.62652 2.68885 2.86922 2.92633 2.97893 3.48224 3.69617 3.74715 4.00793 4.27884 4.49502 4.52898 4.73115 4.81196 5.14297 5.28530 5.43852 5.55650 5.58205 5.62638 5.72367 5.77862 6.04424 6.11733 6.18544 6.43888 6.57153 6.83667 7.35386 7.91445 8.06344 8.58374 8.96494 9.57483 10.08686 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.017041 B = 0.008051 C = 0.006154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.691606 B = 3476.968049 C = 4548.493749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.061 3.939 3 N -0.401 5.401 4 C -0.315 4.315 5 H 0.121 0.879 6 C 0.064 3.936 7 N -0.790 5.790 8 Si 0.883 3.117 9 H -0.264 1.264 10 H -0.278 1.278 11 H -0.256 1.256 12 C 0.459 3.541 13 O -0.533 6.533 14 C -0.002 4.002 15 C -0.139 4.139 16 C 0.143 3.857 17 F -0.125 7.125 18 C -0.161 4.161 19 C -0.028 4.028 20 C 0.003 3.997 21 N -0.022 5.022 22 O -0.241 6.241 23 O -0.112 6.112 24 H 0.046 0.954 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.290 0.710 30 H 0.159 0.841 31 H 0.156 0.844 32 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.304 -10.464 10.591 14.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.062 4.062 3 N -0.117 5.117 4 C -0.445 4.445 5 H 0.139 0.861 6 C -0.155 4.155 7 N -0.420 5.420 8 Si 0.709 3.291 9 H -0.191 1.191 10 H -0.204 1.204 11 H -0.180 1.180 12 C 0.250 3.750 13 O -0.415 6.415 14 C -0.009 4.009 15 C -0.160 4.160 16 C 0.123 3.877 17 F -0.103 7.103 18 C -0.181 4.181 19 C -0.047 4.047 20 C -0.086 4.086 21 N 0.444 4.556 22 O -0.410 6.410 23 O -0.313 6.313 24 H 0.065 0.935 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.099 0.901 28 H 0.085 0.915 29 H 0.103 0.897 30 H 0.176 0.824 31 H 0.174 0.826 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -0.857 -10.347 10.656 14.878 hybrid contribution 0.289 -0.786 0.006 0.837 sum -0.569 -11.133 10.662 15.426 Atomic orbital electron populations 1.22070 0.95435 1.01277 1.02920 1.22281 0.95613 0.85985 1.02278 1.42567 1.51859 1.11269 1.05969 1.20330 1.39173 0.96798 0.88150 0.86118 1.27108 0.95535 0.98625 0.94215 1.68716 1.34273 1.38836 1.00164 0.86942 0.79835 0.82006 0.80332 1.19083 1.20436 1.17961 1.17351 0.87749 0.88187 0.81741 1.90703 1.51300 1.14839 1.84671 1.20197 0.90955 0.91832 0.97911 1.21300 1.02387 0.95510 0.96754 1.17745 0.91379 0.84902 0.93665 1.91555 1.75661 1.51563 1.91524 1.21047 0.97049 0.98385 1.01638 1.20783 0.98103 0.92527 0.93271 1.20271 0.97702 0.91763 0.98914 1.50112 1.00699 1.01915 1.02827 1.96182 1.32247 1.66321 1.46298 1.96423 1.71242 1.62812 1.00814 0.93489 0.90920 0.92244 0.90095 0.91487 0.89717 0.82382 0.82636 0.82145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 62. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 10.19 37.16 0.38 -2.33 16 2 C 0.06 1.15 4.55 -4.04 -0.02 1.13 16 3 N -0.40 -9.24 2.25 -114.38 -0.26 -9.50 16 4 C -0.31 -8.21 9.71 -13.45 -0.13 -8.34 16 5 H 0.12 3.62 7.71 -52.49 -0.40 3.21 16 6 C 0.06 1.54 5.47 -15.16 -0.08 1.46 16 7 N -0.79 -19.83 13.88 56.00 0.78 -19.05 16 8 Si 0.88 17.61 25.24 -169.99 -4.29 13.31 16 9 H -0.26 -4.82 6.48 56.52 0.37 -4.45 16 10 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 11 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 12 C 0.46 10.79 5.34 -12.39 -0.07 10.73 16 13 O -0.53 -14.75 14.78 -18.30 -0.27 -15.02 16 14 C 0.00 -0.04 4.60 -104.98 -0.48 -0.53 16 15 C -0.14 -2.09 7.67 -39.09 -0.30 -2.39 16 16 C 0.14 1.74 7.29 -39.48 -0.29 1.46 16 17 F -0.12 -1.43 17.26 2.25 0.04 -1.39 16 18 C -0.16 -1.70 10.02 -39.41 -0.39 -2.09 16 19 C -0.03 -0.36 9.57 -39.65 -0.38 -0.74 16 20 C 0.00 0.05 6.90 -79.52 -0.55 -0.49 16 21 N -0.02 -0.47 4.98 34.17 0.17 -0.30 16 22 O -0.24 -5.01 19.17 -31.57 -0.61 -5.61 16 23 O -0.11 -2.81 15.77 -39.71 -0.63 -3.44 16 24 H 0.05 0.82 7.91 -51.93 -0.41 0.41 16 25 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 1.54 2.83 -51.93 -0.15 1.40 16 28 H 0.07 1.08 4.94 -51.93 -0.26 0.82 16 29 H 0.29 6.53 8.26 -40.82 -0.34 6.19 16 30 H 0.16 2.25 7.64 -52.49 -0.40 1.85 16 31 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.16 1.75 7.59 -52.49 -0.40 1.35 16 LS Contribution 286.55 15.07 4.32 4.32 Total: -1.00 -30.25 286.55 -5.51 -35.76 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -2.45 Total: 3.06 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -2.31 Total: -2.14 kcal Atomic # 7 Polarization: -29.54 SS G_CDS: 0.69 Total: -28.85 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -1.50 Total: -24.07 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -4.29 Total: 13.31 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.25 -5.51 -35.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049497.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.706 kcal (2) G-P(sol) polarization free energy of solvation -30.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds