Wall clock time and date at job start Tue Mar 31 2020 05:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.46743 * 2 1 4 4 C 1.33316 * 120.00701 * 82.23703 * 3 2 1 5 5 H 1.08000 * 120.00774 * 168.92387 * 4 3 2 6 6 C 1.46793 * 119.99400 * 349.19808 * 4 3 2 7 7 N 1.29311 * 120.00205 * 12.21697 * 6 4 3 8 8 Si 1.86797 * 120.00029 * 192.21501 * 6 4 3 9 9 H 1.48508 * 109.47184 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47445 * 120.00049 * 8 6 4 11 11 H 1.48497 * 109.47401 * 240.00413 * 8 6 4 12 12 C 1.34780 * 119.99756 * 262.23349 * 3 2 1 13 13 O 1.21496 * 120.00095 * 174.37177 * 12 3 2 14 14 C 1.47528 * 120.00332 * 354.37643 * 12 3 2 15 15 C 1.39752 * 120.17731 * 53.76632 * 14 12 3 16 16 C 1.37826 * 119.87106 * 179.72150 * 15 14 12 17 17 C 1.38481 * 120.22778 * 0.53904 * 16 15 14 18 18 N 1.48017 * 119.82078 * 179.73680 * 17 16 15 19 19 O 1.31703 * 119.99796 * 180.02562 * 18 17 16 20 20 O 1.31698 * 120.00128 * 0.02562 * 18 17 16 21 21 C 1.38217 * 120.36145 * 359.76168 * 17 16 15 22 22 C 1.38304 * 120.12194 * 359.95480 * 21 17 16 23 23 F 1.35100 * 120.11878 * 179.97438 * 22 21 17 24 24 H 1.09001 * 109.47138 * 166.28445 * 1 2 3 25 25 H 1.09001 * 109.47566 * 286.28516 * 1 2 3 26 26 H 1.09002 * 109.47631 * 46.28826 * 1 2 3 27 27 H 1.08997 * 109.47159 * 240.00248 * 2 1 3 28 28 H 1.09002 * 109.47510 * 119.99412 * 2 1 3 29 29 H 0.96998 * 120.00282 * 179.97438 * 7 6 4 30 30 H 1.08008 * 120.06541 * 359.97438 * 15 14 12 31 31 H 1.08005 * 119.88119 * 180.25330 * 16 15 14 32 32 H 1.07999 * 119.94152 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.0934 2.0618 1.1439 5 1 2.6151 3.0069 1.1768 6 6 1.4723 1.5236 2.3602 7 7 1.0619 0.2977 2.3885 8 14 1.2747 2.6097 3.8671 9 1 1.8204 3.9605 3.5787 10 1 -0.1656 2.7214 4.2114 11 1 2.0116 2.0111 5.0088 12 6 2.3915 1.9640 -1.1566 13 8 2.6989 3.1393 -1.1731 14 6 2.4268 1.1748 -2.4025 15 6 1.2977 0.4621 -2.8148 16 6 1.3358 -0.2685 -3.9829 17 6 2.4925 -0.3076 -4.7433 18 7 2.5252 -1.0998 -5.9932 19 8 3.6236 -1.1398 -6.7189 20 8 1.4561 -1.7646 -6.3797 21 6 3.6167 0.3887 -4.3413 22 6 3.5929 1.1313 -3.1747 23 9 4.6920 1.8114 -2.7815 24 1 -0.3633 -0.9984 -0.2437 25 1 -0.3634 0.2882 0.9864 26 1 -0.3634 0.7101 -0.7428 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 0.6518 -0.0580 3.1923 30 1 0.3956 0.4869 -2.2214 31 1 0.4619 -0.8161 -4.3038 32 1 4.5153 0.3532 -4.9393 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049511.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:56 Heat of formation + Delta-G solvation = 3.757399 kcal Electronic energy + Delta-G solvation = -22052.237795 eV Core-core repulsion = 18319.607024 eV Total energy + Delta-G solvation = -3732.630771 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.085 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -48.73565 -40.15287 -38.99626 -37.52154 -35.59056 -34.24396 -32.80376 -31.66913 -30.83066 -29.93254 -27.19590 -25.12784 -23.02989 -22.84248 -22.36808 -20.08178 -18.74520 -18.03039 -17.61193 -17.01735 -16.20321 -16.05829 -15.89971 -15.54980 -15.32188 -14.60486 -14.47703 -14.01341 -13.99859 -13.19846 -12.97888 -12.50898 -12.40285 -12.23579 -11.92069 -11.57774 -11.47592 -11.24964 -11.15219 -10.95747 -10.68038 -10.64638 -10.54495 -10.50179 -9.44232 -9.28923 -9.03458 -8.72476 -8.50188 -7.06185 -4.03972 -0.72563 0.96380 1.03362 1.27887 2.70025 2.89336 2.94574 3.07541 3.54428 3.64631 4.05642 4.27722 4.40314 4.49878 4.70238 4.94947 4.97067 5.11998 5.58056 5.72380 5.78731 5.79176 5.92978 6.05812 6.19036 6.22360 6.37075 6.51104 6.56927 6.95438 7.03697 7.13836 7.44335 7.88472 8.57031 8.80724 9.55417 9.77647 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.029905 B = 0.004853 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.085439 B = 5768.794707 C = 6431.428193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.086 3.914 3 N -0.380 5.380 4 C -0.292 4.292 5 H 0.122 0.878 6 C 0.034 3.966 7 N -0.803 5.803 8 Si 0.942 3.058 9 H -0.257 1.257 10 H -0.271 1.271 11 H -0.273 1.273 12 C 0.419 3.581 13 O -0.585 6.585 14 C -0.061 4.061 15 C -0.094 4.094 16 C -0.060 4.060 17 C -0.004 4.004 18 N -0.003 5.003 19 O -0.197 6.197 20 O -0.193 6.193 21 C -0.094 4.094 22 C 0.124 3.876 23 F -0.113 7.113 24 H 0.047 0.953 25 H 0.088 0.912 26 H 0.035 0.965 27 H 0.044 0.956 28 H 0.127 0.873 29 H 0.287 0.713 30 H 0.163 0.837 31 H 0.157 0.843 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.890 -3.481 -1.999 4.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.037 4.037 3 N -0.090 5.090 4 C -0.422 4.422 5 H 0.139 0.861 6 C -0.180 4.180 7 N -0.436 5.436 8 Si 0.766 3.234 9 H -0.180 1.180 10 H -0.196 1.196 11 H -0.199 1.199 12 C 0.212 3.788 13 O -0.474 6.474 14 C -0.068 4.068 15 C -0.114 4.114 16 C -0.080 4.080 17 C -0.093 4.093 18 N 0.465 4.535 19 O -0.384 6.384 20 O -0.380 6.380 21 C -0.115 4.115 22 C 0.101 3.899 23 F -0.091 7.091 24 H 0.066 0.934 25 H 0.107 0.893 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.144 0.856 29 H 0.100 0.900 30 H 0.180 0.820 31 H 0.174 0.826 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.811 -2.756 -1.306 3.547 hybrid contribution 0.079 0.028 0.247 0.261 sum -1.732 -2.727 -1.059 3.400 Atomic orbital electron populations 1.22340 0.96010 0.99389 1.03417 1.22208 0.95286 0.83292 1.02882 1.43097 1.48036 1.11727 1.06130 1.21188 1.31200 1.04869 0.84987 0.86051 1.27124 0.94631 0.96035 1.00221 1.69014 1.30834 1.13935 1.29818 0.85572 0.78892 0.80555 0.78390 1.18031 1.19647 1.19863 1.17152 0.91489 0.87668 0.82462 1.90654 1.57346 1.14735 1.84625 1.20762 0.92689 0.95974 0.97389 1.21610 0.99091 0.95483 0.95200 1.20973 0.96550 0.97385 0.93050 1.19798 0.97993 1.03785 0.87766 1.50295 1.01886 0.99056 1.02221 1.96247 1.17264 1.71053 1.53813 1.96238 1.21114 1.43823 1.76837 1.20671 0.99042 0.95925 0.95817 1.17164 0.83787 0.95142 0.93761 1.91584 1.50252 1.77083 1.90201 0.93420 0.89309 0.94662 0.93760 0.85578 0.90024 0.82002 0.82581 0.82087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 8.75 37.16 0.33 -2.28 16 2 C 0.09 1.63 4.90 -4.04 -0.02 1.61 16 3 N -0.38 -8.48 2.55 -114.44 -0.29 -8.77 16 4 C -0.29 -6.88 9.64 -13.45 -0.13 -7.01 16 5 H 0.12 3.08 7.32 -52.49 -0.38 2.69 16 6 C 0.03 0.72 5.33 -15.16 -0.08 0.63 16 7 N -0.80 -16.06 7.47 56.00 0.42 -15.64 16 8 Si 0.94 16.67 29.66 -169.99 -5.04 11.63 16 9 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 10 H -0.27 -4.73 7.11 56.52 0.40 -4.33 16 11 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16 12 C 0.42 9.63 6.83 -12.47 -0.09 9.54 16 13 O -0.59 -15.72 16.44 5.37 0.09 -15.63 16 14 C -0.06 -1.15 4.78 -104.91 -0.50 -1.65 16 15 C -0.09 -1.44 7.62 -39.17 -0.30 -1.74 16 16 C -0.06 -0.83 9.56 -39.64 -0.38 -1.21 16 17 C 0.00 -0.06 6.89 -79.87 -0.55 -0.61 16 18 N 0.00 -0.06 4.98 34.00 0.17 0.11 16 19 O -0.20 -3.48 19.13 -31.57 -0.60 -4.08 16 20 O -0.19 -3.31 19.13 -31.57 -0.60 -3.92 16 21 C -0.09 -1.45 9.54 -39.56 -0.38 -1.83 16 22 C 0.12 2.21 7.27 -38.92 -0.28 1.92 16 23 F -0.11 -2.20 16.66 2.25 0.04 -2.16 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.09 1.67 5.70 -51.93 -0.30 1.37 16 26 H 0.03 0.58 6.25 -51.93 -0.32 0.25 16 27 H 0.04 0.76 5.45 -51.93 -0.28 0.48 16 28 H 0.13 2.57 5.78 -51.93 -0.30 2.26 16 29 H 0.29 5.24 8.26 -40.82 -0.34 4.91 16 30 H 0.16 2.32 4.59 -52.48 -0.24 2.08 16 31 H 0.16 1.82 7.56 -52.48 -0.40 1.42 16 32 H 0.16 2.22 7.56 -52.49 -0.40 1.82 16 LS Contribution 285.05 15.07 4.30 4.30 Total: -1.00 -26.20 285.05 -6.09 -32.28 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -2.18 Total: 4.51 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -2.38 Total: -2.63 kcal Atomic # 7 Polarization: -24.59 SS G_CDS: 0.30 Total: -24.30 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -1.12 Total: -23.63 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 16.67 SS G_CDS: -5.04 Total: 11.63 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -26.20 -6.09 -32.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049511.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.042 kcal (2) G-P(sol) polarization free energy of solvation -26.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds