Wall clock time and date at job start Tue Mar 31 2020 06:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86801 * 120.00142 * 2 1 4 4 H 1.48497 * 109.47239 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47066 * 300.00214 * 3 2 1 6 6 H 1.48506 * 109.46849 * 59.99396 * 3 2 1 7 7 C 1.38798 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99752 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00252 * 0.02562 * 7 2 1 10 10 C 1.80998 * 99.99895 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47038 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00050 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00110 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00211 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47425 * 179.97438 * 14 13 11 16 16 N 1.46498 * 109.47425 * 179.97438 * 15 14 13 17 17 C 1.38405 * 120.00241 * 180.02562 * 16 15 14 18 18 N 1.32494 * 119.21430 * 359.45979 * 17 16 15 19 19 C 1.32277 * 120.73841 * 179.72095 * 18 17 16 20 20 C 1.38608 * 119.19678 * 0.53884 * 19 18 17 21 21 C 1.38606 * 118.55898 * 359.73449 * 20 19 18 22 22 N 1.32279 * 119.19607 * 359.97438 * 21 20 19 23 23 H 0.97000 * 119.99803 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47263 * 59.99655 * 10 9 7 25 25 H 1.09001 * 109.46982 * 299.99743 * 10 9 7 26 26 H 0.97004 * 120.00037 * 359.97438 * 13 11 10 27 27 H 1.09007 * 109.47027 * 60.00353 * 14 13 11 28 28 H 1.08993 * 109.47264 * 300.00411 * 14 13 11 29 29 H 1.09007 * 109.46593 * 60.00255 * 15 14 13 30 30 H 1.09001 * 109.47217 * 300.00236 * 15 14 13 31 31 H 0.97005 * 119.99891 * 359.72855 * 16 15 14 32 32 H 1.08000 * 120.40224 * 180.29765 * 19 18 17 33 33 H 1.07992 * 120.71909 * 179.75623 * 20 19 18 34 34 H 1.07994 * 120.40358 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0021 11 6 1.9873 -5.3027 0.0017 12 8 0.7910 -5.5023 0.0009 13 7 2.8440 -6.3431 0.0022 14 6 2.3303 -7.7151 0.0024 15 6 3.5023 -8.6986 0.0023 16 7 2.9886 -10.0705 0.0031 17 6 3.8684 -11.1390 0.0037 18 7 5.1722 -10.9031 -0.0073 19 6 6.0399 -11.9015 -0.0015 20 6 5.5702 -13.2056 0.0049 21 6 4.2003 -13.4164 0.0107 22 7 3.3869 -12.3733 0.0104 23 1 -0.4850 0.8401 -0.0004 24 1 3.1238 -3.7309 0.8925 25 1 3.1251 -3.7317 -0.8875 26 1 3.8009 -6.1835 0.0025 27 1 1.7220 -7.8754 -0.8878 28 1 1.7214 -7.8749 0.8921 29 1 4.1110 -8.5384 0.8923 30 1 4.1109 -8.5386 -0.8877 31 1 2.0318 -10.2302 0.0075 32 1 7.1015 -11.7030 -0.0057 33 1 6.2567 -14.0392 0.0058 34 1 3.8018 -14.4201 0.0162 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048999260.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:46 Heat of formation + Delta-G solvation = 19.749995 kcal Electronic energy + Delta-G solvation = -17961.975418 eV Core-core repulsion = 14828.544066 eV Total energy + Delta-G solvation = -3133.431353 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.19064 -39.26836 -36.88767 -34.42783 -33.94667 -32.43728 -31.56963 -29.81037 -27.69804 -25.49990 -24.97048 -23.61499 -22.50571 -20.48309 -18.60627 -17.94472 -17.61383 -16.33410 -16.20074 -16.11828 -15.62939 -15.25665 -14.89119 -14.81251 -14.57173 -14.34273 -13.85156 -13.72207 -13.17506 -12.62426 -12.57688 -12.00585 -11.76542 -11.31519 -11.15316 -11.07614 -11.02991 -10.76748 -10.74717 -9.82102 -9.50340 -9.43773 -9.09276 -8.99477 -8.46437 -8.24879 -6.51417 -6.22752 -3.93437 0.84494 0.87044 2.34714 3.03905 3.08644 3.21191 3.28542 3.33899 3.59828 3.71236 3.88307 4.19289 4.32216 4.43628 4.51802 4.84212 4.89619 4.90225 5.12354 5.12603 5.19647 5.44205 5.56229 5.64943 5.73693 5.87306 5.93023 6.12065 6.41376 6.50458 6.73469 7.09449 7.58879 7.61478 7.99391 8.34597 8.53945 9.22777 10.84739 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.057662 B = 0.002265 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.471176 B =12358.090413 C =12817.804172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.920 3.080 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.074 0.926 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.534 3.466 12 O -0.515 6.515 13 N -0.736 5.736 14 C 0.110 3.890 15 C 0.128 3.872 16 N -0.694 5.694 17 C 0.566 3.434 18 N -0.568 5.568 19 C 0.192 3.808 20 C -0.297 4.297 21 C 0.193 3.807 22 N -0.572 5.572 23 H 0.268 0.732 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.401 0.599 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.417 0.583 32 H 0.167 0.833 33 H 0.143 0.857 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.079 -24.953 0.029 28.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.092 0.908 9 S 0.166 5.834 10 C -0.303 4.303 11 C 0.320 3.680 12 O -0.389 6.389 13 N -0.391 5.391 14 C -0.015 4.015 15 C 0.003 3.997 16 N -0.331 5.331 17 C 0.209 3.791 18 N -0.291 5.291 19 C 0.025 3.975 20 C -0.323 4.323 21 C 0.025 3.975 22 N -0.294 5.294 23 H 0.078 0.922 24 H 0.109 0.891 25 H 0.109 0.891 26 H 0.235 0.765 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.255 0.745 32 H 0.184 0.816 33 H 0.161 0.839 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 10.314 -24.175 0.018 26.284 hybrid contribution 2.701 0.460 0.008 2.740 sum 13.015 -23.715 0.026 27.052 Atomic orbital electron populations 1.70030 1.05953 1.27366 1.46925 1.25006 0.95045 0.99077 0.94540 0.86103 0.79578 0.81832 0.77898 1.19602 1.20566 1.20571 1.22907 0.94958 0.91586 1.58855 0.90820 1.85413 1.04881 0.96392 1.96726 1.23525 1.06648 0.95069 1.05101 1.20329 0.86439 0.86212 0.75015 1.90713 1.15353 1.85533 1.47305 1.45775 1.10232 1.04793 1.78339 1.21304 0.95612 0.81368 1.03262 1.21393 0.95977 0.79063 1.03240 1.43884 1.07761 1.02438 1.79031 1.19269 0.85886 0.85922 0.88032 1.67954 1.01857 1.37195 1.22102 1.22960 0.99401 0.87833 0.87334 1.22538 0.97945 0.99513 1.12277 1.22927 0.89810 0.97292 0.87485 1.67902 1.40830 0.98493 1.22211 0.92224 0.89051 0.89059 0.76489 0.90895 0.90896 0.90737 0.90677 0.74500 0.81618 0.83908 0.81631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.13 13.22 55.49 0.73 -25.39 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.36 29.55 -169.99 -5.02 16.33 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.53 -15.17 9.50 30.94 0.29 -14.87 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 11 C 0.53 9.72 7.85 -10.99 -0.09 9.63 16 12 O -0.52 -11.52 15.86 5.56 0.09 -11.44 16 13 N -0.74 -9.30 5.56 -60.29 -0.33 -9.63 16 14 C 0.11 1.19 5.79 -4.04 -0.02 1.16 16 15 C 0.13 1.14 5.76 -4.04 -0.02 1.12 16 16 N -0.69 -6.60 5.70 -62.31 -0.36 -6.96 16 17 C 0.57 6.08 8.43 -322.81 -2.72 3.36 16 18 N -0.57 -5.77 9.59 -13.93 -0.13 -5.90 16 19 C 0.19 1.39 11.30 -17.22 -0.19 1.20 16 20 C -0.30 -1.76 10.16 -39.31 -0.40 -2.16 16 21 C 0.19 1.39 11.30 -17.22 -0.19 1.20 16 22 N -0.57 -5.86 10.46 -13.93 -0.15 -6.01 16 23 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 24 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 25 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 26 H 0.40 3.85 8.47 -40.82 -0.35 3.51 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.42 3.58 8.59 -40.82 -0.35 3.23 16 32 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16 33 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 34 H 0.17 0.64 8.06 -52.49 -0.42 0.22 16 LS Contribution 319.77 15.07 4.82 4.82 Total: -1.00 -36.39 319.77 -9.83 -46.23 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -4.05 Total: 2.00 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -3.22 Total: -0.20 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: -0.24 Total: -53.90 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.44 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -36.39 -9.83 -46.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048999260.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.976 kcal (2) G-P(sol) polarization free energy of solvation -36.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds