Wall clock time and date at job start Tue Mar 31 2020 05:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 H 1.07998 * 120.00129 * 240.00616 * 4 2 1 6 6 C 1.37880 * 119.99861 * 59.99898 * 4 2 1 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47432 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46890 * 120.00210 * 8 6 4 11 11 H 1.48501 * 109.47062 * 240.00257 * 8 6 4 12 12 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 13 13 C 1.34778 * 119.99771 * 274.99826 * 12 2 1 14 14 O 1.21568 * 120.00054 * 0.02562 * 13 12 2 15 15 C 1.47698 * 120.00059 * 180.02562 * 13 12 2 16 16 C 1.39660 * 120.16185 * 359.72774 * 15 13 12 17 17 C 1.37863 * 119.87384 * 179.69977 * 16 15 13 18 18 C 1.38461 * 120.21641 * 0.57012 * 17 16 15 19 19 N 1.48022 * 119.82749 * 179.69640 * 18 17 16 20 20 O 1.21802 * 119.99274 * 180.02562 * 19 18 17 21 21 O 1.21795 * 119.99850 * 0.02958 * 19 18 17 22 22 C 1.38196 * 120.34150 * 359.73026 * 18 17 16 23 23 C 1.38327 * 120.11851 * 359.96903 * 22 18 17 24 24 F 1.35098 * 120.11188 * 180.02562 * 23 22 18 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 29 29 H 0.96998 * 120.00630 * 95.00428 * 12 2 1 30 30 H 1.07995 * 120.06646 * 359.97327 * 16 15 13 31 31 H 1.07997 * 119.89022 * 180.28125 * 17 16 15 32 32 H 1.08004 * 119.94431 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1457 -2.2877 -3.6037 10 1 1.1662 -1.5867 -4.8160 11 1 3.1468 -0.1874 -4.8164 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8575 1.1612 2.4118 15 6 2.6397 -0.7143 3.5630 16 6 2.9679 -2.0706 3.5054 17 6 3.4332 -2.7130 4.6331 18 6 3.5650 -2.0208 5.8250 19 7 4.0590 -2.7206 7.0321 20 8 4.1756 -2.1148 8.0823 21 8 4.3490 -3.9022 6.9751 22 6 3.2369 -0.6801 5.8936 23 6 2.7746 -0.0202 4.7692 24 9 2.4544 1.2906 4.8363 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7096 1.1617 -3.4844 29 1 2.2490 -1.6318 1.1527 30 1 2.8617 -2.6141 2.5783 31 1 3.6914 -3.7606 4.5877 32 1 3.3418 -0.1465 6.8267 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050391237.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:28 Heat of formation + Delta-G solvation = -56.680993 kcal Electronic energy + Delta-G solvation = -21265.557280 eV Core-core repulsion = 17530.305704 eV Total energy + Delta-G solvation = -3735.251576 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.085 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.19780 -42.48770 -40.09180 -38.44099 -36.87245 -35.10419 -33.07459 -32.14917 -31.35038 -29.17244 -27.15514 -25.41740 -23.67984 -23.45310 -21.54312 -20.05780 -19.74297 -19.01107 -18.32376 -17.85214 -16.88728 -16.67692 -16.10987 -16.03284 -15.39855 -15.11493 -14.57901 -14.37330 -13.95138 -13.50327 -13.04805 -12.96842 -12.63691 -12.29007 -11.90539 -11.84867 -11.50445 -11.42123 -11.24203 -11.11199 -10.94069 -10.46427 -10.38544 -10.01986 -9.56930 -9.49861 -9.22261 -8.72624 -8.22452 -6.26832 -4.37571 -0.71822 0.39396 0.81201 0.97828 2.45505 3.14838 3.22257 3.24670 3.39124 3.48154 3.58315 3.87078 4.10932 4.21759 4.31781 4.56916 4.76470 5.06058 5.06666 5.23071 5.34079 5.45731 5.80424 6.07405 6.63830 6.75252 6.94307 7.13598 7.29948 7.31877 7.50623 7.70706 7.96534 8.30324 8.52344 8.75089 9.30255 10.79186 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.028331 B = 0.003807 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.087873 B = 7352.691529 C = 8114.464826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.263 3.737 3 H 0.053 0.947 4 C -0.539 4.539 5 H 0.063 0.937 6 C 0.068 3.932 7 N -0.881 5.881 8 Si 0.904 3.096 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.691 5.691 13 C 0.534 3.466 14 O -0.524 6.524 15 C -0.105 4.105 16 C -0.060 4.060 17 C -0.072 4.072 18 C -0.007 4.007 19 N 0.027 4.973 20 O -0.154 6.154 21 O -0.149 6.149 22 C -0.104 4.104 23 C 0.159 3.841 24 F -0.095 7.095 25 H 0.016 0.984 26 H 0.093 0.907 27 H 0.029 0.971 28 H 0.266 0.734 29 H 0.389 0.611 30 H 0.164 0.836 31 H 0.165 0.835 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.929 -7.164 13.055 15.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.162 3.838 3 H 0.071 0.929 4 C -0.577 4.577 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.518 5.518 8 Si 0.731 3.269 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.339 5.339 13 C 0.317 3.683 14 O -0.402 6.402 15 C -0.109 4.109 16 C -0.079 4.079 17 C -0.091 4.091 18 C -0.090 4.090 19 N 0.549 4.451 20 O -0.371 6.371 21 O -0.367 6.367 22 C -0.124 4.124 23 C 0.138 3.862 24 F -0.073 7.073 25 H 0.035 0.965 26 H 0.112 0.888 27 H 0.048 0.952 28 H 0.076 0.924 29 H 0.223 0.777 30 H 0.182 0.818 31 H 0.183 0.817 32 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 3.356 -5.771 12.299 13.994 hybrid contribution 0.472 -0.841 -0.504 1.088 sum 3.829 -6.613 11.795 14.054 Atomic orbital electron populations 1.22098 0.97977 0.99396 1.01242 1.18911 0.91328 0.94165 0.79375 0.92879 1.21190 1.32947 1.13494 0.90104 0.91861 1.24888 0.94642 0.94901 0.99158 1.69900 1.35531 1.22270 1.24073 0.86356 0.78658 0.79503 0.82368 1.19677 1.20762 1.20768 1.46562 1.63661 1.13587 1.10117 1.17829 0.80373 0.87065 0.83052 1.90853 1.50083 1.14808 1.84438 1.21110 0.99802 0.94977 0.95049 1.21372 0.95119 0.92430 0.99013 1.21042 0.96376 1.02195 0.89472 1.20877 1.08479 0.93072 0.86541 1.43516 0.98379 1.01037 1.02206 1.94565 1.56985 1.67860 1.17657 1.94555 1.52034 0.98602 1.91489 1.20844 0.98515 0.92677 1.00367 1.17235 0.97276 0.79734 0.91988 1.91689 1.89059 1.30091 1.96465 0.96495 0.88802 0.95225 0.92410 0.77665 0.81838 0.81714 0.81253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.26 37.16 0.34 -3.12 16 2 C 0.26 6.22 2.56 -69.08 -0.18 6.04 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 4 C -0.54 -13.31 8.73 -34.44 -0.30 -13.61 16 5 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 6 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.88 -23.67 11.32 55.43 0.63 -23.05 16 8 Si 0.90 19.58 29.54 -169.99 -5.02 14.56 16 9 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 N -0.69 -12.82 5.02 -55.92 -0.28 -13.10 16 13 C 0.53 9.77 7.73 -12.40 -0.10 9.67 16 14 O -0.52 -11.83 15.00 5.31 0.08 -11.75 16 15 C -0.10 -1.41 5.88 -104.91 -0.62 -2.03 16 16 C -0.06 -0.58 9.54 -39.19 -0.37 -0.95 16 17 C -0.07 -0.63 9.53 -39.64 -0.38 -1.01 16 18 C -0.01 -0.07 6.85 -79.88 -0.55 -0.62 16 19 N 0.03 0.32 4.45 34.00 0.15 0.47 16 20 O -0.15 -1.93 18.43 -29.46 -0.54 -2.48 16 21 O -0.15 -1.81 18.43 -29.46 -0.54 -2.35 16 22 C -0.10 -1.10 9.52 -39.56 -0.38 -1.48 16 23 C 0.16 2.08 7.29 -38.96 -0.28 1.79 16 24 F -0.10 -1.47 15.55 2.25 0.04 -1.44 16 25 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 29 H 0.39 5.82 6.57 -40.82 -0.27 5.55 16 30 H 0.16 1.20 6.41 -52.49 -0.34 0.86 16 31 H 0.17 1.07 7.59 -52.49 -0.40 0.67 16 32 H 0.17 1.51 7.59 -52.48 -0.40 1.11 16 LS Contribution 295.41 15.07 4.45 4.45 Total: -1.00 -29.69 295.41 -6.44 -36.12 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -2.50 Total: 2.22 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -2.90 Total: -3.66 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.50 Total: -35.68 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -1.01 Total: -16.57 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.69 -6.44 -36.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391237.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.556 kcal (2) G-P(sol) polarization free energy of solvation -29.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds