Wall clock time and date at job start Tue Mar 31 2020 05:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 H 1.07998 * 120.00129 * 240.00616 * 4 2 1 6 6 C 1.37880 * 119.99861 * 59.99898 * 4 2 1 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47432 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46890 * 120.00210 * 8 6 4 11 11 H 1.48501 * 109.47062 * 240.00257 * 8 6 4 12 12 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 13 13 C 1.34778 * 119.99771 * 274.99826 * 12 2 1 14 14 O 1.21568 * 120.00054 * 0.02562 * 13 12 2 15 15 C 1.47698 * 120.00059 * 180.02562 * 13 12 2 16 16 C 1.39660 * 120.16185 * 359.72774 * 15 13 12 17 17 C 1.37863 * 119.87384 * 179.69977 * 16 15 13 18 18 C 1.38461 * 120.21641 * 0.57012 * 17 16 15 19 19 N 1.48022 * 119.82749 * 179.69640 * 18 17 16 20 20 O 1.21802 * 119.99274 * 180.02562 * 19 18 17 21 21 O 1.21795 * 119.99850 * 0.02958 * 19 18 17 22 22 C 1.38196 * 120.34150 * 359.73026 * 18 17 16 23 23 C 1.38327 * 120.11851 * 359.96903 * 22 18 17 24 24 F 1.35098 * 120.11188 * 180.02562 * 23 22 18 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 29 29 H 0.96998 * 120.00630 * 95.00428 * 12 2 1 30 30 H 1.07995 * 120.06646 * 359.97327 * 16 15 13 31 31 H 1.07997 * 119.89022 * 180.28125 * 17 16 15 32 32 H 1.08004 * 119.94431 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1457 -2.2877 -3.6037 10 1 1.1662 -1.5867 -4.8160 11 1 3.1468 -0.1874 -4.8164 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8575 1.1612 2.4118 15 6 2.6397 -0.7143 3.5630 16 6 2.9679 -2.0706 3.5054 17 6 3.4332 -2.7130 4.6331 18 6 3.5650 -2.0208 5.8250 19 7 4.0590 -2.7206 7.0321 20 8 4.1756 -2.1148 8.0823 21 8 4.3490 -3.9022 6.9751 22 6 3.2369 -0.6801 5.8936 23 6 2.7746 -0.0202 4.7692 24 9 2.4544 1.2906 4.8363 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7096 1.1617 -3.4844 29 1 2.2490 -1.6318 1.1527 30 1 2.8617 -2.6141 2.5783 31 1 3.6914 -3.7606 4.5877 32 1 3.3418 -0.1465 6.8267 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050391237.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:27 Heat of formation + Delta-G solvation = -74.822192 kcal Electronic energy + Delta-G solvation = -21266.343942 eV Core-core repulsion = 17530.305704 eV Total energy + Delta-G solvation = -3736.038237 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.085 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.28348 -43.39255 -41.30713 -39.67650 -37.79315 -36.86220 -34.62219 -33.45748 -32.24159 -30.86016 -28.21259 -27.35801 -24.75489 -24.43399 -22.99911 -21.57009 -20.74061 -19.92387 -19.75010 -18.74665 -18.09386 -17.71585 -17.66079 -17.15030 -16.95366 -16.51044 -15.92898 -15.68874 -15.10955 -14.77934 -14.47189 -14.19393 -13.96395 -13.71650 -13.20358 -13.02423 -12.92142 -12.78970 -12.75871 -12.43393 -12.35678 -12.30151 -12.11960 -11.16370 -11.09859 -10.97589 -10.63560 -10.40984 -9.91596 -8.19365 -6.37177 -1.66274 -0.45715 -0.14804 0.08209 1.42098 1.46174 1.47915 1.58905 2.05655 2.21781 2.43756 2.60725 3.04831 3.12559 3.28183 3.38407 3.49499 3.86288 4.18159 4.41218 4.51060 4.57517 4.72085 4.87515 4.89459 5.04157 5.17674 5.34729 5.50613 5.62887 5.82403 6.04974 6.36741 6.66432 6.72925 7.20440 7.38173 8.87270 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.028331 B = 0.003807 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.087873 B = 7352.691529 C = 8114.464826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.269 3.731 3 H 0.002 0.998 4 C -0.546 4.546 5 H 0.082 0.918 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.972 3.028 9 H -0.255 1.255 10 H -0.281 1.281 11 H -0.287 1.287 12 N -0.684 5.684 13 C 0.534 3.466 14 O -0.577 6.577 15 C -0.119 4.119 16 C -0.039 4.039 17 C -0.049 4.049 18 C -0.005 4.005 19 N 0.027 4.973 20 O -0.178 6.178 21 O -0.138 6.138 22 C -0.093 4.093 23 C 0.142 3.858 24 F -0.118 7.118 25 H 0.011 0.989 26 H 0.068 0.932 27 H 0.046 0.954 28 H 0.265 0.735 29 H 0.410 0.590 30 H 0.194 0.806 31 H 0.200 0.800 32 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.079 -10.464 13.342 17.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.166 3.834 3 H 0.020 0.980 4 C -0.584 4.584 5 H 0.100 0.900 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.797 3.203 9 H -0.178 1.178 10 H -0.207 1.207 11 H -0.214 1.214 12 N -0.334 5.334 13 C 0.319 3.681 14 O -0.458 6.458 15 C -0.124 4.124 16 C -0.058 4.058 17 C -0.067 4.067 18 C -0.088 4.088 19 N 0.548 4.452 20 O -0.389 6.389 21 O -0.360 6.360 22 C -0.112 4.112 23 C 0.121 3.879 24 F -0.096 7.096 25 H 0.031 0.969 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.248 0.752 30 H 0.211 0.789 31 H 0.217 0.783 32 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 4.524 -9.085 12.645 16.215 hybrid contribution 0.143 0.127 -0.522 0.556 sum 4.667 -8.958 12.123 15.780 Atomic orbital electron populations 1.21926 0.97971 0.99912 0.99723 1.18475 0.91339 0.92175 0.81398 0.97961 1.21559 1.32719 1.13773 0.90324 0.90042 1.25792 0.94810 0.95518 1.02399 1.70057 1.36968 1.23946 1.24637 0.85286 0.78036 0.78589 0.78361 1.17848 1.20672 1.21370 1.46178 1.63731 1.14423 1.09019 1.18413 0.79049 0.86550 0.84039 1.90825 1.52171 1.17345 1.85431 1.20699 1.02314 0.96507 0.92863 1.21616 0.93239 0.90443 1.00480 1.21393 0.94005 1.03432 0.87909 1.21015 1.08184 0.92970 0.86651 1.43638 0.98220 1.01011 1.02377 1.94587 1.58111 1.67969 1.18208 1.94545 1.51286 0.98660 1.91473 1.20830 0.97506 0.92912 0.99980 1.17410 0.98626 0.79100 0.92778 1.91631 1.89561 1.31772 1.96614 0.96947 0.91377 0.93477 0.92550 0.75224 0.78918 0.78251 0.79971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.49 9.26 71.98 0.67 -5.82 16 2 C 0.27 12.93 2.56 44.25 0.11 13.05 16 3 H 0.00 0.14 7.58 -2.39 -0.02 0.13 16 4 C -0.55 -26.56 8.73 25.60 0.22 -26.33 16 5 H 0.08 3.58 7.74 -2.91 -0.02 3.56 16 6 C 0.02 0.77 5.30 84.66 0.45 1.21 16 7 N -0.92 -50.48 11.32 21.45 0.24 -50.24 16 8 Si 0.97 39.49 29.54 68.60 2.03 41.52 16 9 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 10 H -0.28 -11.29 7.11 99.48 0.71 -10.59 16 11 H -0.29 -11.86 7.11 99.48 0.71 -11.15 16 12 N -0.68 -24.90 5.02 -449.11 -2.25 -27.16 16 13 C 0.53 19.65 7.73 86.74 0.67 20.32 16 14 O -0.58 -27.27 15.00 -3.93 -0.06 -27.33 16 15 C -0.12 -3.05 5.88 -20.05 -0.12 -3.17 16 16 C -0.04 -0.60 9.54 22.52 0.21 -0.38 16 17 C -0.05 -0.63 9.53 22.23 0.21 -0.41 16 18 C -0.01 -0.09 6.85 36.42 0.25 0.16 16 19 N 0.03 0.57 4.45 -46.36 -0.21 0.36 16 20 O -0.18 -4.12 18.43 18.88 0.35 -3.77 16 21 O -0.14 -2.83 18.43 18.89 0.35 -2.49 16 22 C -0.09 -1.80 9.52 22.28 0.21 -1.59 16 23 C 0.14 3.63 7.29 22.67 0.17 3.80 16 24 F -0.12 -3.78 15.55 44.97 0.70 -3.09 16 25 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.07 3.60 6.07 -2.39 -0.01 3.59 16 27 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 29 H 0.41 11.18 6.57 -92.71 -0.61 10.57 16 30 H 0.19 1.83 6.41 -2.91 -0.02 1.81 16 31 H 0.20 1.32 7.59 -2.91 -0.02 1.30 16 32 H 0.18 3.01 7.59 -2.91 -0.02 2.99 16 Total: -1.00 -67.21 295.41 4.79 -62.42 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 0.58 Total: 8.95 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: 3.06 Total: 0.82 kcal Atomic # 7 Polarization: -74.82 SS G_CDS: -2.22 Total: -77.04 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: 0.64 Total: -33.58 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.70 Total: -3.09 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -67.21 4.79 -62.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391237.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.400 kcal (2) G-P(sol) polarization free energy of solvation -67.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds