Wall clock time and date at job start Tue Mar 31 2020 06:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38286 * 119.93755 * 2 1 4 4 C 1.38108 * 120.08240 * 179.72095 * 3 2 1 5 5 C 1.38888 * 119.95479 * 0.50766 * 4 3 2 6 6 N 1.39949 * 120.06477 * 179.76586 * 5 4 3 7 7 C 1.34767 * 120.00436 * 214.81472 * 6 5 4 8 8 O 1.21593 * 120.00154 * 355.38566 * 7 6 5 9 9 N 1.34779 * 120.00292 * 175.37980 * 7 6 5 10 10 C 1.46497 * 120.00221 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.47048 * 324.99662 * 10 9 7 12 12 C 1.52999 * 109.47511 * 85.00078 * 10 9 7 13 13 C 1.50704 * 109.46991 * 205.00222 * 10 9 7 14 14 H 1.07999 * 120.00012 * 359.97438 * 13 10 9 15 15 C 1.37869 * 119.99926 * 180.27147 * 13 10 9 16 16 N 1.31522 * 120.00034 * 359.72731 * 15 13 10 17 17 Si 1.86805 * 119.99995 * 179.72162 * 15 13 10 18 18 H 1.48498 * 109.47097 * 90.00371 * 17 15 13 19 19 H 1.48499 * 109.47138 * 210.00137 * 17 15 13 20 20 H 1.48501 * 109.46994 * 330.00295 * 17 15 13 21 21 C 1.38824 * 119.87342 * 359.49210 * 5 4 3 22 22 C 1.38248 * 119.91982 * 0.25499 * 21 5 4 23 23 Cl 1.73602 * 119.98070 * 180.02562 * 22 21 5 24 24 H 1.09002 * 109.46796 * 270.02278 * 1 2 3 25 25 H 1.08997 * 109.46922 * 30.02407 * 1 2 3 26 26 H 1.08997 * 109.47038 * 150.02252 * 1 2 3 27 27 H 1.07998 * 119.95719 * 359.97438 * 3 2 1 28 28 H 1.07999 * 120.01825 * 180.27524 * 4 3 2 29 29 H 0.97002 * 119.99341 * 34.82391 * 6 5 4 30 30 H 0.97004 * 119.99424 * 0.02562 * 9 7 6 31 31 H 1.08991 * 109.47250 * 179.97438 * 12 10 9 32 32 H 1.09003 * 109.46613 * 300.00266 * 12 10 9 33 33 H 1.09005 * 109.46877 * 59.99696 * 12 10 9 34 34 H 0.97006 * 119.99691 * 179.97438 * 16 15 13 35 35 H 1.08004 * 120.04088 * 180.22640 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1983 0.0000 4 6 3.5782 1.2018 0.0058 5 6 4.2747 0.0003 0.0010 6 7 5.6742 0.0012 0.0019 7 6 6.3492 -0.9537 -0.6681 8 8 5.7452 -1.8633 -1.2032 9 7 7.6937 -0.9003 -0.7452 10 6 8.4274 -1.9379 -1.4741 11 1 7.9241 -2.8963 -1.3466 12 6 8.4745 -1.5804 -2.9610 13 6 9.8317 -2.0325 -0.9354 14 1 10.1463 -1.3843 -0.1310 15 6 10.7167 -2.9424 -1.4738 16 7 10.3337 -3.7316 -2.4537 17 14 12.4597 -3.0543 -0.8113 18 1 12.5055 -4.0410 0.2975 19 1 13.3752 -3.4875 -1.8974 20 1 12.8842 -1.7234 -0.3076 21 6 3.5801 -1.2017 0.0010 22 6 2.1976 -1.1991 0.0005 23 17 1.3274 -2.7013 0.0012 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8897 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6554 2.1326 -0.0004 28 1 4.1161 2.1383 0.0103 29 1 6.1584 0.6890 0.4850 30 1 8.1756 -0.1748 -0.3181 31 1 9.0207 -2.3522 -3.5031 32 1 7.4587 -1.5120 -3.3505 33 1 8.9778 -0.6220 -3.0884 34 1 10.9565 -4.3715 -2.8327 35 1 4.1190 -2.1376 0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050391409.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:40 Heat of formation + Delta-G solvation = -17.920950 kcal Electronic energy + Delta-G solvation = -19262.437304 eV Core-core repulsion = 16093.035959 eV Total energy + Delta-G solvation = -3169.401345 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.32582 -38.71118 -36.45631 -35.28628 -34.36513 -32.58176 -31.39998 -30.71542 -28.79803 -26.16107 -25.26794 -23.05712 -22.12633 -20.91883 -19.89706 -18.29998 -17.67912 -16.08212 -15.66742 -15.48556 -15.10394 -14.58424 -14.49376 -14.08184 -13.92900 -13.66060 -13.22781 -12.58698 -12.42301 -12.37549 -11.95419 -11.86983 -11.61665 -11.30819 -11.10451 -11.01928 -10.79714 -10.77614 -10.34025 -10.25859 -9.93463 -9.45830 -9.08414 -8.72669 -8.58901 -8.14973 -7.77158 -6.15168 -4.24736 1.15340 1.32953 2.19068 3.10637 3.23064 3.30056 3.31901 3.49473 3.90516 4.29826 4.71784 4.85663 4.91074 5.04558 5.17474 5.24775 5.39680 5.50333 5.63821 5.82997 5.86681 6.15913 6.30920 6.42948 6.50656 6.76581 6.94933 7.05181 7.07895 7.18490 7.41207 7.58939 7.79110 7.95200 8.12300 8.68013 8.79873 9.17209 9.43419 10.90817 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.032543 B = 0.003516 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.182270 B = 7962.337039 C = 8421.999192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.107 4.107 3 C -0.091 4.091 4 C -0.148 4.148 5 C 0.188 3.812 6 N -0.695 5.695 7 C 0.691 3.309 8 O -0.579 6.579 9 N -0.717 5.717 10 C 0.280 3.720 11 H 0.050 0.950 12 C -0.148 4.148 13 C -0.535 4.535 14 H 0.061 0.939 15 C 0.067 3.933 16 N -0.882 5.882 17 Si 0.903 3.097 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.274 1.274 21 C -0.111 4.111 22 C -0.016 4.016 23 Cl -0.070 7.070 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.131 0.869 28 H 0.129 0.871 29 H 0.405 0.595 30 H 0.387 0.613 31 H 0.091 0.909 32 H 0.015 0.985 33 H 0.026 0.974 34 H 0.265 0.735 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.258 10.444 6.177 19.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.109 4.109 3 C -0.110 4.110 4 C -0.169 4.169 5 C 0.091 3.909 6 N -0.343 5.343 7 C 0.392 3.608 8 O -0.457 6.457 9 N -0.368 5.368 10 C 0.178 3.822 11 H 0.068 0.932 12 C -0.207 4.207 13 C -0.574 4.574 14 H 0.079 0.921 15 C -0.137 4.137 16 N -0.520 5.520 17 Si 0.731 3.269 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.132 4.132 22 C -0.043 4.043 23 Cl -0.041 7.041 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.149 0.851 28 H 0.147 0.853 29 H 0.240 0.760 30 H 0.219 0.781 31 H 0.110 0.890 32 H 0.034 0.966 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -15.657 9.256 5.494 19.000 hybrid contribution 1.494 0.502 0.682 1.718 sum -14.163 9.757 6.177 18.274 Atomic orbital electron populations 1.20788 0.90598 1.03126 1.02455 1.19660 0.96536 0.91394 1.03269 1.20666 0.93191 0.96942 1.00189 1.20954 0.94407 0.96683 1.04890 1.17344 0.82471 0.92985 0.98143 1.42836 1.04012 1.32527 1.54952 1.16188 0.83084 0.82066 0.79509 1.90889 1.67644 1.35295 1.51854 1.45880 1.03107 1.30772 1.57023 1.18706 0.90087 0.85614 0.87771 0.93198 1.22106 0.98067 1.01067 0.99464 1.21197 0.95760 1.21092 1.19313 0.92056 1.24883 0.98936 0.95116 0.94749 1.69908 1.35724 1.21706 1.24614 0.86425 0.83567 0.78393 0.78561 1.20531 1.21045 1.19864 1.21305 0.91752 0.99810 1.00320 1.20604 0.91981 0.86519 1.05234 1.98347 1.76409 1.32518 1.96856 0.91128 0.91450 0.91077 0.85087 0.85301 0.76024 0.78112 0.89027 0.96563 0.95512 0.92502 0.82715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.61 36.01 0.35 -0.67 16 2 C -0.11 -1.26 5.89 -104.55 -0.62 -1.87 16 3 C -0.09 -0.95 9.69 -39.61 -0.38 -1.34 16 4 C -0.15 -1.70 9.97 -39.39 -0.39 -2.09 16 5 C 0.19 2.76 6.30 -83.69 -0.53 2.24 16 6 N -0.70 -10.38 5.34 -14.23 -0.08 -10.45 16 7 C 0.69 13.78 8.37 -86.92 -0.73 13.06 16 8 O -0.58 -13.86 13.44 5.28 0.07 -13.79 16 9 N -0.72 -14.59 5.07 -59.81 -0.30 -14.90 16 10 C 0.28 7.05 2.56 -69.08 -0.18 6.87 16 11 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 12 C -0.15 -3.69 9.26 37.16 0.34 -3.34 16 13 C -0.54 -13.97 8.73 -34.44 -0.30 -14.28 16 14 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 15 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 16 N -0.88 -24.68 11.31 55.43 0.63 -24.05 16 17 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 C -0.11 -1.81 8.48 -39.36 -0.33 -2.14 16 22 C -0.02 -0.23 6.31 -39.53 -0.25 -0.48 16 23 Cl -0.07 -0.95 27.28 -51.86 -1.41 -2.36 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 26 H 0.07 0.67 6.89 -51.93 -0.36 0.31 16 27 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 28 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.40 4.50 8.84 -40.82 -0.36 4.14 16 30 H 0.39 6.63 8.56 -40.82 -0.35 6.28 16 31 H 0.09 2.47 6.06 -51.93 -0.31 2.16 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.16 2.96 6.22 -52.48 -0.33 2.64 16 LS Contribution 312.59 15.07 4.71 4.71 Total: -1.00 -30.67 312.59 -8.70 -39.36 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -4.18 Total: 8.45 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -3.11 Total: -2.36 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: 0.25 Total: -49.40 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: 0.07 Total: -13.79 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.41 Total: -2.36 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.67 -8.70 -39.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391409.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.443 kcal (2) G-P(sol) polarization free energy of solvation -30.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds