Wall clock time and date at job start Tue Mar 31 2020 06:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38282 * 119.93944 * 2 1 4 4 C 1.38093 * 120.08588 * 180.25409 * 3 2 1 5 5 C 1.38903 * 119.95439 * 359.47156 * 4 3 2 6 6 N 1.39941 * 120.06120 * 180.29834 * 5 4 3 7 7 C 1.34773 * 119.99870 * 144.91161 * 6 5 4 8 8 O 1.21590 * 120.00407 * 4.61336 * 7 6 5 9 9 N 1.34779 * 120.00231 * 184.62002 * 7 6 5 10 10 C 1.46503 * 120.00172 * 179.97438 * 9 7 6 11 11 H 1.08994 * 109.47228 * 34.99525 * 10 9 7 12 12 C 1.52998 * 109.46802 * 274.99684 * 10 9 7 13 13 C 1.50704 * 109.46949 * 154.99592 * 10 9 7 14 14 H 1.08000 * 120.00235 * 0.02562 * 13 10 9 15 15 C 1.37874 * 119.99648 * 179.97438 * 13 10 9 16 16 N 1.31516 * 120.00328 * 359.97438 * 15 13 10 17 17 Si 1.86801 * 119.99901 * 180.02562 * 15 13 10 18 18 H 1.48498 * 109.46941 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47331 * 119.99907 * 17 15 13 20 20 H 1.48505 * 109.46840 * 239.99987 * 17 15 13 21 21 C 1.38824 * 119.87402 * 0.27648 * 5 4 3 22 22 C 1.38255 * 119.91614 * 359.97438 * 21 5 4 23 23 Cl 1.73600 * 119.97866 * 180.02562 * 22 21 5 24 24 H 1.08997 * 109.47012 * 270.24999 * 1 2 3 25 25 H 1.08999 * 109.46998 * 30.25543 * 1 2 3 26 26 H 1.08998 * 109.46681 * 150.24970 * 1 2 3 27 27 H 1.08005 * 119.95411 * 0.02562 * 3 2 1 28 28 H 1.08001 * 120.02613 * 179.74483 * 4 3 2 29 29 H 0.97003 * 120.00381 * 324.90349 * 6 5 4 30 30 H 0.96998 * 119.99782 * 359.97438 * 9 7 6 31 31 H 1.08999 * 109.47168 * 60.00163 * 12 10 9 32 32 H 1.09002 * 109.46947 * 180.02562 * 12 10 9 33 33 H 1.09003 * 109.46808 * 299.99901 * 12 10 9 34 34 H 0.97003 * 120.00270 * 179.97438 * 16 15 13 35 35 H 1.08003 * 120.04340 * 179.97438 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5781 1.2018 -0.0053 5 6 4.2748 0.0001 0.0005 6 7 5.6742 0.0012 0.0014 7 6 6.3482 -0.9505 0.6770 8 8 5.7436 -1.8575 1.2156 9 7 7.6927 -0.8967 0.7558 10 6 8.4253 -1.9309 1.4906 11 1 7.9222 -2.8898 1.3672 12 6 8.4703 -1.5660 2.9758 13 6 9.8304 -2.0281 0.9544 14 1 10.1462 -1.3837 0.1473 15 6 10.7130 -2.9389 1.4950 16 7 10.3290 -3.7226 2.4789 17 14 12.4549 -3.0589 0.8308 18 1 12.6349 -2.0751 -0.2668 19 1 13.4212 -2.7683 1.9203 20 1 12.6929 -4.4294 0.3106 21 6 3.5802 -1.2018 0.0057 22 6 2.1976 -1.1992 0.0058 23 17 1.3274 -2.7013 0.0130 24 1 -0.3633 0.0045 1.0276 25 1 -0.3633 0.8877 -0.5178 26 1 -0.3632 -0.8922 -0.5100 27 1 1.6554 2.1326 0.0004 28 1 4.1161 2.1383 -0.0095 29 1 6.1591 0.6867 -0.4843 30 1 8.1751 -0.1733 0.3259 31 1 7.4540 -1.4957 3.3636 32 1 9.0158 -2.3352 3.5225 33 1 8.9735 -0.6070 3.0992 34 1 10.9499 -4.3637 2.8589 35 1 4.1191 -2.1378 0.0098 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050391411.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:45 Heat of formation + Delta-G solvation = -17.970120 kcal Electronic energy + Delta-G solvation = -19262.923193 eV Core-core repulsion = 16093.519716 eV Total energy + Delta-G solvation = -3169.403477 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.32566 -38.71085 -36.45655 -35.28613 -34.36498 -32.58200 -31.39979 -30.71573 -28.79996 -26.16050 -25.26982 -23.05617 -22.12683 -20.91894 -19.89733 -18.30015 -17.67890 -16.08450 -15.67131 -15.49099 -15.10366 -14.56444 -14.49204 -14.10977 -13.91085 -13.64939 -13.22693 -12.59331 -12.43456 -12.41727 -11.96354 -11.83310 -11.57204 -11.33937 -11.11621 -11.00904 -10.78847 -10.77522 -10.33744 -10.26635 -9.94068 -9.45800 -9.07068 -8.72696 -8.59895 -8.14838 -7.77006 -6.15403 -4.24870 1.15264 1.32972 2.19066 3.10792 3.22009 3.30248 3.32883 3.49493 3.90504 4.29783 4.71666 4.85536 4.91095 5.04537 5.17340 5.24620 5.39780 5.50965 5.63639 5.83047 5.86489 6.15892 6.30937 6.42895 6.50714 6.76514 6.94845 7.05218 7.07883 7.18434 7.41158 7.59130 7.78945 7.95181 8.12097 8.68135 8.79907 9.17235 9.43356 10.90646 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.032508 B = 0.003517 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.130169 B = 7959.380587 C = 8418.696752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.107 4.107 3 C -0.091 4.091 4 C -0.148 4.148 5 C 0.187 3.813 6 N -0.695 5.695 7 C 0.691 3.309 8 O -0.579 6.579 9 N -0.717 5.717 10 C 0.280 3.720 11 H 0.050 0.950 12 C -0.148 4.148 13 C -0.534 4.534 14 H 0.062 0.938 15 C 0.066 3.934 16 N -0.882 5.882 17 Si 0.903 3.097 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.282 1.282 21 C -0.110 4.110 22 C -0.016 4.016 23 Cl -0.070 7.070 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.131 0.869 28 H 0.129 0.871 29 H 0.405 0.595 30 H 0.387 0.613 31 H 0.015 0.985 32 H 0.091 0.909 33 H 0.026 0.974 34 H 0.264 0.736 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.257 10.424 -6.223 19.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.108 4.108 3 C -0.110 4.110 4 C -0.169 4.169 5 C 0.090 3.910 6 N -0.343 5.343 7 C 0.392 3.608 8 O -0.457 6.457 9 N -0.368 5.368 10 C 0.178 3.822 11 H 0.068 0.932 12 C -0.207 4.207 13 C -0.573 4.573 14 H 0.080 0.920 15 C -0.137 4.137 16 N -0.519 5.519 17 Si 0.730 3.270 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.208 1.208 21 C -0.132 4.132 22 C -0.044 4.044 23 Cl -0.041 7.041 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.149 0.851 28 H 0.147 0.853 29 H 0.240 0.760 30 H 0.219 0.781 31 H 0.034 0.966 32 H 0.110 0.890 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -15.660 9.239 -5.543 19.009 hybrid contribution 1.495 0.490 -0.656 1.705 sum -14.165 9.730 -6.200 18.269 Atomic orbital electron populations 1.20789 0.90597 1.03008 1.02573 1.19662 0.96536 0.91394 1.03252 1.20660 0.93195 0.96943 1.00206 1.20954 0.94408 0.96685 1.04865 1.17346 0.82474 0.92975 0.98165 1.42835 1.04014 1.32848 1.54643 1.16188 0.83088 0.82045 0.79524 1.90889 1.67596 1.35404 1.51797 1.45880 1.03118 1.31052 1.56735 1.18712 0.90121 0.85693 0.87680 0.93193 1.22106 0.98057 1.01038 0.99493 1.21235 0.95755 1.21156 1.19143 0.92000 1.24885 0.98938 0.95115 0.94771 1.69913 1.35666 1.21894 1.24471 0.86374 0.83781 0.78021 0.78786 1.19754 1.20856 1.20841 1.21305 0.91751 0.99804 1.00309 1.20607 0.91982 0.86522 1.05243 1.98346 1.76420 1.32505 1.96854 0.91074 0.91473 0.91102 0.85088 0.85300 0.76023 0.78112 0.96563 0.89042 0.95509 0.92556 0.82719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.61 36.01 0.35 -0.67 16 2 C -0.11 -1.25 5.89 -104.55 -0.62 -1.87 16 3 C -0.09 -0.96 9.69 -39.62 -0.38 -1.34 16 4 C -0.15 -1.70 9.97 -39.39 -0.39 -2.09 16 5 C 0.19 2.76 6.30 -83.69 -0.53 2.23 16 6 N -0.70 -10.38 5.34 -14.23 -0.08 -10.45 16 7 C 0.69 13.78 8.37 -86.92 -0.73 13.05 16 8 O -0.58 -13.86 13.44 5.29 0.07 -13.79 16 9 N -0.72 -14.59 5.07 -59.81 -0.30 -14.90 16 10 C 0.28 7.04 2.56 -69.08 -0.18 6.86 16 11 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 12 C -0.15 -3.68 9.26 37.16 0.34 -3.34 16 13 C -0.53 -13.95 8.73 -34.44 -0.30 -14.25 16 14 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 15 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 16 N -0.88 -24.67 11.32 55.43 0.63 -24.04 16 17 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 18 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 21 C -0.11 -1.81 8.48 -39.36 -0.33 -2.14 16 22 C -0.02 -0.23 6.31 -39.52 -0.25 -0.48 16 23 Cl -0.07 -0.95 27.28 -51.86 -1.41 -2.36 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 26 H 0.07 0.64 6.90 -51.93 -0.36 0.29 16 27 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 28 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.40 4.50 8.84 -40.82 -0.36 4.14 16 30 H 0.39 6.63 8.56 -40.82 -0.35 6.28 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.16 2.96 6.22 -52.48 -0.33 2.63 16 LS Contribution 312.61 15.07 4.71 4.71 Total: -1.00 -30.68 312.61 -8.70 -39.38 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -4.18 Total: 8.42 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -3.11 Total: -2.36 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: 0.25 Total: -49.39 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: 0.07 Total: -13.79 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.41 Total: -2.36 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.68 -8.70 -39.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391411.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.409 kcal (2) G-P(sol) polarization free energy of solvation -30.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds