Wall clock time and date at job start Tue Mar 31 2020 05:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00245 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00531 * 8 6 4 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 C 1.34780 * 119.99910 * 85.00011 * 12 2 1 14 14 O 1.21569 * 119.99853 * 359.97438 * 13 12 2 15 15 C 1.47687 * 120.00154 * 180.02562 * 13 12 2 16 16 C 1.39661 * 120.16521 * 359.72769 * 15 13 12 17 17 C 1.37857 * 119.87608 * 179.74079 * 16 15 13 18 18 N 1.48022 * 119.88829 * 180.22937 * 17 16 15 19 19 O 1.21800 * 119.99819 * 180.30057 * 18 17 16 20 20 O 1.21798 * 120.00226 * 0.30548 * 18 17 16 21 21 C 1.38454 * 120.21961 * 0.53292 * 17 16 15 22 22 C 1.38200 * 120.33814 * 359.71755 * 21 17 16 23 23 C 1.38321 * 120.12031 * 0.02744 * 22 21 17 24 24 F 1.35103 * 120.11155 * 179.97438 * 23 22 21 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 29 29 H 0.96994 * 119.99975 * 265.00388 * 12 2 1 30 30 H 1.08002 * 120.06110 * 359.97153 * 16 15 13 31 31 H 1.07998 * 119.83164 * 179.70219 * 21 17 16 32 32 H 1.08002 * 119.94000 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.1464 -2.2868 3.6039 10 1 3.1465 -0.1871 4.8166 11 1 1.1661 -1.5866 4.8161 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8575 1.1611 -2.4118 15 6 2.6390 -0.7146 -3.5631 16 6 2.9771 -2.0684 -3.5030 17 6 3.4305 -2.7138 -4.6336 18 7 3.7840 -4.1498 -4.5715 19 8 4.1900 -4.7207 -5.5679 20 8 3.6689 -4.7606 -3.5240 21 6 3.5622 -2.0217 -5.8256 22 6 3.2352 -0.6807 -5.8939 23 6 2.7739 -0.0205 -4.7694 24 9 2.4547 1.2906 -4.8363 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 0.7081 1.1610 3.4844 29 1 2.2490 -1.6317 -1.1525 30 1 2.8799 -2.6095 -2.5734 31 1 3.9226 -2.5324 -6.7063 32 1 3.3400 -0.1472 -6.8271 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050392152.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:31 Heat of formation + Delta-G solvation = -57.296565 kcal Electronic energy + Delta-G solvation = -21495.717129 eV Core-core repulsion = 17760.438859 eV Total energy + Delta-G solvation = -3735.278269 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.085 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.32460 -42.37466 -40.04877 -38.42021 -36.74525 -35.04864 -32.91757 -31.94894 -31.86526 -28.91347 -26.56894 -25.38097 -24.70770 -22.97648 -21.54996 -20.02155 -19.43386 -18.90384 -18.15069 -17.72464 -17.26548 -16.86391 -16.10509 -15.81832 -15.29960 -15.02916 -14.42343 -14.33420 -13.95280 -13.73973 -13.22293 -12.99888 -12.54703 -12.17884 -11.84836 -11.72145 -11.42899 -11.30181 -11.18564 -11.05845 -10.88736 -10.40904 -10.32876 -9.92589 -9.64144 -9.52979 -9.16557 -8.67164 -8.17111 -6.21405 -4.31633 -0.51146 0.16733 0.95658 1.11831 2.46349 3.19967 3.27681 3.30186 3.39026 3.51004 3.58542 3.86717 4.03085 4.25319 4.28450 4.62756 4.87666 5.04842 5.11763 5.14347 5.21983 5.45122 5.81709 6.15646 6.68879 6.80214 6.99562 7.18763 7.35271 7.43635 7.56844 7.75923 8.01564 8.36409 8.57917 8.80781 9.36073 10.84601 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.017740 B = 0.004879 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.000484 B = 5737.369062 C = 7071.374064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.264 3.736 3 H 0.053 0.947 4 C -0.537 4.537 5 H 0.064 0.936 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.694 5.694 13 C 0.541 3.459 14 O -0.528 6.528 15 C -0.157 4.157 16 C 0.004 3.996 17 C -0.067 4.067 18 N 0.032 4.968 19 O -0.161 6.161 20 O -0.151 6.151 21 C -0.012 4.012 22 C -0.163 4.163 23 C 0.208 3.792 24 F -0.093 7.093 25 H 0.029 0.971 26 H 0.015 0.985 27 H 0.093 0.907 28 H 0.265 0.735 29 H 0.389 0.611 30 H 0.168 0.832 31 H 0.166 0.834 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.263 -5.349 -16.064 17.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.163 3.837 3 H 0.071 0.929 4 C -0.576 4.576 5 H 0.082 0.918 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.731 3.269 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.341 5.341 13 C 0.325 3.675 14 O -0.407 6.407 15 C -0.162 4.162 16 C -0.016 4.016 17 C -0.150 4.150 18 N 0.552 4.448 19 O -0.376 6.376 20 O -0.368 6.368 21 C -0.031 4.031 22 C -0.182 4.182 23 C 0.187 3.813 24 F -0.071 7.071 25 H 0.048 0.952 26 H 0.035 0.965 27 H 0.112 0.888 28 H 0.075 0.925 29 H 0.223 0.777 30 H 0.185 0.815 31 H 0.183 0.817 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 3.765 -3.618 -15.924 16.759 hybrid contribution 0.432 -1.063 0.861 1.435 sum 4.198 -4.681 -15.063 16.323 Atomic orbital electron populations 1.22097 0.98008 0.99413 1.01174 1.18904 0.91318 0.94109 0.79399 0.92901 1.21212 1.32828 1.13447 0.90094 0.91802 1.24879 0.94655 0.94898 0.99140 1.69901 1.35629 1.22388 1.24006 0.86357 0.78675 0.79558 0.82343 1.19585 1.20821 1.20763 1.46574 1.63767 1.13628 1.10176 1.17687 0.80068 0.86933 0.82859 1.90842 1.50650 1.14723 1.84455 1.20559 1.06139 0.93575 0.95975 1.21162 0.89393 0.92780 0.98272 1.20969 1.14050 0.82278 0.97751 1.43460 0.98073 1.02831 1.00443 1.94530 1.47345 1.69478 1.26245 1.94599 1.57053 1.66193 1.18978 1.20968 0.92328 0.93178 0.96619 1.21155 1.03741 0.94176 0.99164 1.18049 0.91369 0.79080 0.92791 1.91688 1.88226 1.30604 1.96541 0.95211 0.96546 0.88804 0.92476 0.77665 0.81463 0.81672 0.81691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.26 37.16 0.34 -3.21 16 2 C 0.26 6.44 2.56 -69.08 -0.18 6.26 16 3 H 0.05 1.49 7.58 -51.93 -0.39 1.09 16 4 C -0.54 -13.74 8.73 -34.44 -0.30 -14.04 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.17 11.32 55.43 0.63 -23.54 16 8 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 9 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 N -0.69 -13.67 5.02 -55.92 -0.28 -13.95 16 13 C 0.54 10.28 7.73 -12.40 -0.10 10.18 16 14 O -0.53 -12.06 15.00 5.31 0.08 -11.98 16 15 C -0.16 -2.21 5.88 -104.91 -0.62 -2.83 16 16 C 0.00 0.05 9.04 -39.19 -0.35 -0.31 16 17 C -0.07 -0.74 6.84 -80.00 -0.55 -1.28 16 18 N 0.03 0.40 4.45 33.93 0.15 0.55 16 19 O -0.16 -2.03 18.44 -29.46 -0.54 -2.58 16 20 O -0.15 -2.12 18.44 -29.46 -0.54 -2.66 16 21 C -0.01 -0.10 9.55 -39.52 -0.38 -0.47 16 22 C -0.16 -1.32 10.01 -39.56 -0.40 -1.72 16 23 C 0.21 2.55 7.29 -38.96 -0.28 2.27 16 24 F -0.09 -1.36 15.55 2.25 0.04 -1.32 16 25 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 28 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.39 6.53 6.57 -40.82 -0.27 6.26 16 30 H 0.17 1.90 5.95 -52.49 -0.31 1.58 16 31 H 0.17 0.93 7.60 -52.49 -0.40 0.53 16 32 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 295.42 15.07 4.45 4.45 Total: -1.00 -30.39 295.42 -6.44 -36.83 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -2.50 Total: 2.50 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -2.90 Total: -3.47 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.50 Total: -36.94 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -1.01 Total: -17.21 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.39 -6.44 -36.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050392152.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.471 kcal (2) G-P(sol) polarization free energy of solvation -30.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds