Wall clock time and date at job start Tue Mar 31 2020 06:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38285 * 119.93953 * 2 1 4 4 C 1.38093 * 120.08152 * 180.25236 * 3 2 1 5 5 C 1.38899 * 119.95979 * 359.49894 * 4 3 2 6 6 N 1.39939 * 120.06239 * 180.23002 * 5 4 3 7 7 C 1.34777 * 119.99938 * 144.91115 * 6 5 4 8 8 O 1.21590 * 119.99947 * 4.61286 * 7 6 5 9 9 N 1.34781 * 120.00389 * 184.62205 * 7 6 5 10 10 C 1.46493 * 120.00421 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47202 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.47111 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00002 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00208 * 180.02562 * 12 11 10 15 15 N 1.31510 * 119.99514 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00083 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47410 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47371 * 120.00083 * 16 14 12 19 19 H 1.48503 * 109.47102 * 239.99802 * 16 14 12 20 20 C 1.38824 * 119.87231 * 0.24515 * 5 4 3 21 21 C 1.38247 * 119.91389 * 0.02562 * 20 5 4 22 22 Cl 1.73605 * 119.97769 * 180.02562 * 21 20 5 23 23 H 1.08995 * 109.47143 * 270.25085 * 1 2 3 24 24 H 1.09003 * 109.47299 * 30.25495 * 1 2 3 25 25 H 1.09003 * 109.46964 * 150.25193 * 1 2 3 26 26 H 1.07997 * 119.95176 * 0.02562 * 3 2 1 27 27 H 1.08009 * 120.01823 * 179.76848 * 4 3 2 28 28 H 0.96999 * 120.00572 * 324.90534 * 6 5 4 29 29 H 0.96998 * 119.99636 * 359.97438 * 9 7 6 30 30 H 1.09006 * 109.47008 * 299.99886 * 10 9 7 31 31 H 1.08999 * 109.47296 * 59.99494 * 10 9 7 32 32 H 1.08992 * 109.47290 * 299.99925 * 11 10 9 33 33 H 1.09006 * 109.47449 * 60.00333 * 11 10 9 34 34 H 0.97003 * 119.99943 * 180.02562 * 15 14 12 35 35 H 1.07999 * 120.03887 * 179.97438 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1983 0.0000 4 6 3.5780 1.2017 -0.0053 5 6 4.2747 0.0001 0.0000 6 7 5.6741 0.0011 -0.0005 7 6 6.3489 -0.9504 0.6746 8 8 5.7447 -1.8573 1.2139 9 7 7.6934 -0.8967 0.7520 10 6 8.4268 -1.9307 1.4862 11 6 9.9267 -1.6367 1.4195 12 6 10.6811 -2.7000 2.1754 13 1 10.1444 -3.5052 2.6550 14 6 12.0565 -2.6449 2.2547 15 7 12.7100 -1.6642 1.6711 16 14 12.9916 -3.9634 3.1910 17 1 12.0314 -4.9475 3.7519 18 1 13.9283 -4.6549 2.2693 19 1 13.7587 -3.3354 4.2967 20 6 3.5801 -1.2018 0.0053 21 6 2.1976 -1.1992 0.0049 22 17 1.3273 -2.7013 0.0123 23 1 -0.3633 0.0045 1.0276 24 1 -0.3634 0.8877 -0.5178 25 1 -0.3633 -0.8923 -0.5099 26 1 1.6554 2.1326 0.0004 27 1 4.1161 2.1383 -0.0090 28 1 6.1585 0.6865 -0.4867 29 1 8.1754 -0.1734 0.3216 30 1 8.1031 -1.9359 2.5271 31 1 8.2275 -2.9045 1.0389 32 1 10.2501 -1.6317 0.3787 33 1 10.1264 -0.6628 1.8667 34 1 13.6777 -1.6256 1.7265 35 1 4.1190 -2.1377 0.0090 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054138249.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:04 Heat of formation + Delta-G solvation = -24.634072 kcal Electronic energy + Delta-G solvation = -18683.201080 eV Core-core repulsion = 15513.508632 eV Total energy + Delta-G solvation = -3169.692448 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.59830 -38.95614 -36.60825 -35.35036 -34.64921 -32.96707 -31.69964 -30.88141 -29.52704 -26.53810 -24.65414 -23.19787 -21.95795 -20.98731 -20.67571 -18.42373 -17.69416 -16.40102 -15.92126 -15.65461 -15.13224 -14.98544 -14.54457 -14.32047 -14.16179 -13.87403 -13.59353 -13.31001 -12.66060 -12.54861 -12.32041 -12.07564 -11.77683 -11.50529 -11.23549 -11.08708 -10.93848 -10.64800 -10.44069 -10.19080 -9.95306 -9.62723 -9.29581 -8.89364 -8.67180 -8.43979 -8.05264 -6.12799 -4.15545 0.98676 1.16090 2.03805 2.77259 3.21292 3.26817 3.34657 3.40005 3.61698 4.32805 4.47689 4.60062 4.72974 4.89377 5.09727 5.22634 5.24731 5.40255 5.48165 5.64954 5.74481 5.97683 6.09519 6.23328 6.27383 6.30140 6.31666 6.68956 6.82822 6.83723 7.02398 7.50019 7.57016 7.85963 8.12387 8.26661 8.72812 8.90843 9.49626 10.98919 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.035573 B = 0.002846 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.935268 B = 9837.160276 C =10495.517878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.102 4.102 3 C -0.090 4.090 4 C -0.144 4.144 5 C 0.182 3.818 6 N -0.691 5.691 7 C 0.696 3.304 8 O -0.578 6.578 9 N -0.730 5.730 10 C 0.138 3.862 11 C 0.013 3.987 12 C -0.521 4.521 13 H 0.061 0.939 14 C 0.059 3.941 15 N -0.894 5.894 16 Si 0.897 3.103 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.110 4.110 21 C -0.017 4.017 22 Cl -0.068 7.068 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.133 0.867 27 H 0.131 0.869 28 H 0.408 0.592 29 H 0.396 0.604 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.023 0.977 33 H 0.023 0.977 34 H 0.262 0.738 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.648 7.859 -6.468 23.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.104 4.104 3 C -0.109 4.109 4 C -0.165 4.165 5 C 0.085 3.915 6 N -0.339 5.339 7 C 0.396 3.604 8 O -0.455 6.455 9 N -0.383 5.383 10 C 0.016 3.984 11 C -0.025 4.025 12 C -0.560 4.560 13 H 0.079 0.921 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.725 3.275 17 H -0.195 1.195 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.131 4.131 21 C -0.044 4.044 22 Cl -0.039 7.039 23 H 0.090 0.910 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.151 0.849 27 H 0.149 0.851 28 H 0.243 0.757 29 H 0.229 0.771 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -21.965 6.902 -5.946 23.780 hybrid contribution 1.189 -0.043 0.075 1.192 sum -20.777 6.859 -5.871 22.654 Atomic orbital electron populations 1.20808 0.90460 1.03150 1.02694 1.19703 0.96661 0.91377 1.02674 1.20696 0.93179 0.97059 0.99995 1.20973 0.94450 0.96703 1.04372 1.17317 0.82131 0.93111 0.98913 1.42696 1.04228 1.32644 1.54360 1.16083 0.82640 0.82154 0.79508 1.90912 1.67622 1.35468 1.51476 1.45582 1.03843 1.31235 1.57640 1.21690 0.93622 0.88538 0.94571 1.19336 0.87150 0.97987 0.98020 1.21076 0.91536 1.09922 1.33434 0.92113 1.24997 0.97767 0.95953 0.95590 1.69961 1.07968 1.31525 1.43869 0.86448 0.79819 0.81657 0.79603 1.19534 1.20914 1.20922 1.21254 0.91818 0.99614 1.00434 1.20605 0.91953 0.86655 1.05229 1.98353 1.76388 1.32352 1.96836 0.90951 0.91339 0.91024 0.84903 0.85119 0.75650 0.77088 0.92458 0.92449 0.95891 0.95899 0.92871 0.82830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 9.61 36.00 0.35 -0.54 16 2 C -0.10 -1.06 5.89 -104.55 -0.62 -1.67 16 3 C -0.09 -0.82 9.69 -39.62 -0.38 -1.20 16 4 C -0.14 -1.42 9.97 -39.39 -0.39 -1.81 16 5 C 0.18 2.31 6.30 -83.69 -0.53 1.79 16 6 N -0.69 -8.65 5.34 -14.23 -0.08 -8.73 16 7 C 0.70 11.68 8.41 -86.91 -0.73 10.95 16 8 O -0.58 -11.85 13.78 5.29 0.07 -11.77 16 9 N -0.73 -12.24 5.56 -65.23 -0.36 -12.60 16 10 C 0.14 2.87 5.61 -4.05 -0.02 2.85 16 11 C 0.01 0.30 5.09 -27.89 -0.14 0.16 16 12 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 13 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -25.84 13.29 55.43 0.74 -25.11 16 16 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 17 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 C -0.11 -1.57 8.48 -39.36 -0.33 -1.91 16 21 C -0.02 -0.22 6.31 -39.52 -0.25 -0.46 16 22 Cl -0.07 -0.82 27.28 -51.86 -1.41 -2.23 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 25 H 0.07 0.57 6.89 -51.93 -0.36 0.21 16 26 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 27 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 28 H 0.41 3.63 8.84 -40.82 -0.36 3.27 16 29 H 0.40 5.55 8.49 -40.82 -0.35 5.20 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.15 2.56 6.22 -52.49 -0.33 2.23 16 LS Contribution 317.43 15.07 4.78 4.78 Total: -1.00 -31.76 317.43 -9.06 -40.82 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -4.31 Total: 3.53 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -3.46 Total: -4.90 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: 0.30 Total: -46.44 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.07 Total: -11.77 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.41 Total: -2.23 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.76 -9.06 -40.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054138249.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.186 kcal (2) G-P(sol) polarization free energy of solvation -31.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds