Wall clock time and date at job start Tue Mar 31 2020 05:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47099 * 2 1 4 4 N 1.46503 * 109.46926 * 180.02562 * 3 2 1 5 5 C 1.36878 * 120.00537 * 92.84263 * 4 3 2 6 6 H 1.07993 * 120.00865 * 208.77738 * 5 4 3 7 7 C 1.39016 * 119.99366 * 28.78000 * 5 4 3 8 8 N 1.31393 * 120.00357 * 26.26488 * 7 5 4 9 9 Si 1.86803 * 119.99684 * 206.26153 * 7 5 4 10 10 H 1.48498 * 109.47109 * 95.00022 * 9 7 5 11 11 H 1.48503 * 109.46962 * 214.99890 * 9 7 5 12 12 H 1.48493 * 109.47156 * 334.99464 * 9 7 5 13 13 C 1.34781 * 119.99420 * 272.85045 * 4 3 2 14 14 O 1.21730 * 119.99345 * 185.82348 * 13 4 3 15 15 C 1.46603 * 120.00488 * 5.81793 * 13 4 3 16 16 C 1.34983 * 125.06399 * 186.92614 * 15 13 4 17 17 C 1.38920 * 113.63773 * 180.02562 * 16 15 13 18 18 C 1.47338 * 122.95623 * 179.97438 * 17 16 15 19 19 N 1.34777 * 119.99918 * 180.02562 * 18 17 16 20 20 O 1.21617 * 120.00138 * 359.97438 * 18 17 16 21 21 C 1.36672 * 114.08413 * 0.02562 * 17 16 15 22 22 S 1.70603 * 110.54685 * 359.72585 * 21 17 16 23 23 H 1.09002 * 109.47513 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46571 * 299.99957 * 1 2 3 25 25 H 1.08998 * 109.47765 * 59.99241 * 1 2 3 26 26 H 1.09002 * 109.46571 * 240.00043 * 2 1 3 27 27 H 1.08997 * 109.46982 * 120.00270 * 2 1 3 28 28 H 1.08997 * 109.47043 * 60.00861 * 3 2 1 29 29 H 1.09000 * 109.47015 * 300.00315 * 3 2 1 30 30 H 0.96995 * 120.00218 * 180.02562 * 8 7 5 31 31 H 1.08001 * 123.18415 * 0.02562 * 16 15 13 32 32 H 0.97001 * 119.99871 * 359.97438 * 19 18 17 33 33 H 0.97000 * 120.00402 * 179.97438 * 19 18 17 34 34 H 1.08002 * 124.73272 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1890 1.5014 -1.1848 6 1 5.1689 1.0546 -1.2653 7 6 3.6223 2.1366 -2.2838 8 7 2.7356 3.0898 -2.1067 9 14 4.1215 1.6347 -4.0126 10 1 3.1546 0.6372 -4.5371 11 1 4.1259 2.8304 -4.8932 12 1 5.4808 1.0378 -3.9816 13 6 4.1793 1.3842 1.1650 14 8 5.3919 1.4909 1.1725 15 6 3.4525 1.1926 2.4236 16 6 4.0039 1.2513 3.6542 17 6 3.0958 1.0328 4.6826 18 6 3.4770 1.0500 6.1057 19 7 2.5463 0.8298 7.0553 20 8 4.6316 1.2621 6.4234 21 6 1.8179 0.7994 4.2579 22 16 1.7327 0.8579 2.5550 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3632 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6768 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 2.3399 3.5327 -2.8736 31 1 5.0520 1.4494 3.8235 32 1 1.6255 0.6603 6.8019 33 1 2.7973 0.8408 7.9922 34 1 0.9779 0.6096 4.9096 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056485668.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:40 Heat of formation + Delta-G solvation = -34.104475 kcal Electronic energy + Delta-G solvation = -20009.364477 eV Core-core repulsion = 16841.305068 eV Total energy + Delta-G solvation = -3168.059409 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.63844 -38.75772 -36.61311 -35.26801 -33.66842 -33.08058 -31.45950 -29.41883 -26.22523 -25.42730 -24.62192 -22.43535 -21.17436 -19.75541 -18.61482 -17.97202 -17.09455 -16.75602 -16.54926 -15.51214 -14.93257 -14.79035 -14.64185 -14.12491 -13.93861 -13.91673 -13.01808 -12.86986 -12.52008 -12.37834 -12.14090 -11.84189 -11.56717 -11.41676 -11.10778 -10.90548 -10.62380 -10.46493 -10.40474 -10.25687 -9.74615 -9.71064 -9.21042 -8.67492 -8.47181 -7.95610 -7.74339 -6.54818 -4.04787 0.81943 1.90309 2.11039 2.27996 3.08138 3.17891 3.23182 3.54942 3.59752 3.98734 4.16552 4.62714 4.88237 5.05803 5.18849 5.37478 5.48268 5.56069 5.64648 5.80891 5.94916 6.16795 6.21014 6.25697 6.42417 6.50779 6.65297 6.74069 6.78863 7.07150 7.34835 7.42770 8.00496 8.30906 8.32980 8.98563 9.17663 9.79663 10.46562 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.027421 B = 0.005371 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.859617 B = 5212.016447 C = 5980.568526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.151 4.151 3 C 0.077 3.923 4 N -0.424 5.424 5 C -0.300 4.300 6 H 0.103 0.897 7 C 0.035 3.965 8 N -0.855 5.855 9 Si 0.922 3.078 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.266 1.266 13 C 0.507 3.493 14 O -0.569 6.569 15 C -0.228 4.228 16 C -0.053 4.053 17 C -0.161 4.161 18 C 0.582 3.418 19 N -0.855 5.855 20 O -0.542 6.542 21 C -0.280 4.280 22 S 0.281 5.719 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.136 0.864 30 H 0.273 0.727 31 H 0.154 0.846 32 H 0.398 0.602 33 H 0.401 0.599 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.398 -5.450 8.337 15.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.191 4.191 3 C -0.049 4.049 4 N -0.141 5.141 5 C -0.428 4.428 6 H 0.120 0.880 7 C -0.170 4.170 8 N -0.492 5.492 9 Si 0.748 3.252 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.190 1.190 13 C 0.295 3.705 14 O -0.453 6.453 15 C -0.349 4.349 16 C -0.083 4.083 17 C -0.179 4.179 18 C 0.367 3.633 19 N -0.418 5.418 20 O -0.420 6.420 21 C -0.419 4.419 22 S 0.552 5.448 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.153 0.847 30 H 0.083 0.917 31 H 0.172 0.828 32 H 0.227 0.773 33 H 0.232 0.768 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -11.281 -5.277 7.192 14.382 hybrid contribution 0.687 -0.001 0.749 1.017 sum -10.594 -5.277 7.941 14.253 Atomic orbital electron populations 1.21715 0.95532 1.01275 1.01755 1.22175 0.95771 0.98788 1.02344 1.22193 0.82381 0.95702 1.04634 1.43532 1.04592 1.61276 1.04680 1.19662 1.03965 1.33966 0.85181 0.87959 1.25371 0.97233 0.93707 1.00731 1.69884 1.28793 1.18496 1.32074 0.85971 0.79609 0.78416 0.81252 1.20086 1.20788 1.18982 1.17037 0.87300 0.84473 0.81658 1.90684 1.13152 1.55884 1.85621 1.24753 0.97294 1.13602 0.99214 1.20132 1.01207 0.97872 0.89094 1.18859 0.93406 1.11878 0.93737 1.17876 0.84774 0.75146 0.85463 1.43675 1.12333 1.76291 1.09547 1.90819 1.19060 1.48994 1.83137 1.26752 1.00133 1.07965 1.07021 1.84295 1.05639 1.61445 0.93465 0.92795 0.92944 0.92292 0.90637 0.92012 0.92473 0.84728 0.91698 0.82815 0.77289 0.76831 0.82329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.71 37.16 0.36 -1.48 16 2 C -0.15 -2.51 5.20 -26.73 -0.14 -2.65 16 3 C 0.08 1.57 4.50 -4.04 -0.02 1.55 16 4 N -0.42 -10.52 2.57 -116.32 -0.30 -10.82 16 5 C -0.30 -7.99 9.02 -15.01 -0.14 -8.13 16 6 H 0.10 2.87 7.69 -52.49 -0.40 2.47 16 7 C 0.04 0.87 4.90 -17.45 -0.09 0.79 16 8 N -0.86 -21.57 11.20 55.50 0.62 -20.95 16 9 Si 0.92 19.40 29.63 -169.99 -5.04 14.36 16 10 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 11 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 12 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 13 C 0.51 12.86 7.56 -12.88 -0.10 12.77 16 14 O -0.57 -16.57 16.62 5.16 0.09 -16.49 16 15 C -0.23 -4.71 6.11 -37.37 -0.23 -4.94 16 16 C -0.05 -1.05 9.48 -40.49 -0.38 -1.44 16 17 C -0.16 -2.62 5.82 -106.51 -0.62 -3.24 16 18 C 0.58 9.05 8.06 -12.56 -0.10 8.95 16 19 N -0.85 -8.43 8.84 30.41 0.27 -8.16 16 20 O -0.54 -10.68 17.52 5.26 0.09 -10.58 16 21 C -0.28 -3.66 10.41 30.17 0.31 -3.34 16 22 S 0.28 4.21 13.83 -107.50 -1.49 2.72 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.59 7.14 -51.93 -0.37 0.22 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.06 1.00 5.65 -33.66 -0.19 0.81 16 28 H 0.06 1.10 4.77 -24.41 -0.12 0.98 16 29 H 0.14 3.01 5.10 -51.93 -0.26 2.74 16 30 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 31 H 0.15 3.33 7.96 -52.49 -0.42 2.91 16 32 H 0.40 2.71 7.29 -40.82 -0.30 2.41 16 33 H 0.40 3.25 8.93 -40.82 -0.36 2.88 16 34 H 0.16 1.37 6.99 -52.49 -0.37 1.01 16 LS Contribution 296.55 15.07 4.47 4.47 Total: -1.00 -33.06 296.55 -5.61 -38.67 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -3.19 Total: 7.94 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -1.13 Total: -1.16 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.59 Total: -39.94 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: 0.18 Total: -27.07 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.04 Total: 14.36 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -1.49 Total: 2.72 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.06 -5.61 -38.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056485668.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.570 kcal (2) G-P(sol) polarization free energy of solvation -33.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds