Wall clock time and date at job start Tue Mar 31 2020 05:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35758 * 116.99797 * 2 1 4 4 C 1.38910 * 119.60564 * 180.02562 * 3 2 1 5 5 C 1.38322 * 119.18333 * 179.97438 * 4 3 2 6 6 C 1.39380 * 118.42507 * 359.97438 * 5 4 3 7 7 N 1.40143 * 120.42247 * 179.97438 * 6 5 4 8 8 C 1.46498 * 119.99970 * 113.00418 * 7 6 5 9 9 C 1.34781 * 119.99739 * 292.99773 * 7 6 5 10 10 O 1.21297 * 119.99819 * 5.29295 * 9 7 6 11 11 C 1.50698 * 119.99796 * 185.29416 * 9 7 6 12 12 S 1.80998 * 109.46994 * 180.02562 * 11 9 7 13 13 C 1.76202 * 100.00176 * 179.97438 * 12 11 9 14 14 H 1.08002 * 119.99845 * 359.97438 * 13 12 11 15 15 C 1.38795 * 120.00107 * 179.97438 * 13 12 11 16 16 N 1.31633 * 119.99702 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 120.00143 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47129 * 90.00004 * 17 15 13 19 19 H 1.48503 * 109.46910 * 210.00335 * 17 15 13 20 20 H 1.48498 * 109.46681 * 330.00030 * 17 15 13 21 21 C 1.38656 * 119.15182 * 0.02562 * 6 5 4 22 22 N 1.31949 * 120.73429 * 0.02562 * 21 6 5 23 23 H 1.09006 * 109.47259 * 299.99569 * 1 2 3 24 24 H 1.09002 * 109.47556 * 59.99567 * 1 2 3 25 25 H 1.08995 * 109.47044 * 179.97438 * 1 2 3 26 26 H 1.07996 * 120.40909 * 359.97438 * 4 3 2 27 27 H 1.07999 * 120.78727 * 179.72417 * 5 4 3 28 28 H 1.09003 * 109.47565 * 89.99974 * 8 7 6 29 29 H 1.09001 * 109.46417 * 209.99767 * 8 7 6 30 30 H 1.08993 * 109.47307 * 329.99262 * 8 7 6 31 31 H 1.09006 * 109.46949 * 299.99813 * 11 9 7 32 32 H 1.08996 * 109.47461 * 59.99898 * 11 9 7 33 33 H 0.97000 * 119.99685 * 179.97438 * 16 15 13 34 34 H 1.07997 * 119.63401 * 179.97438 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 3.4329 1.2728 -0.0005 5 6 4.0517 2.5099 -0.0011 6 6 3.2523 3.6517 -0.0016 7 7 3.8352 4.9261 -0.0016 8 6 3.6894 5.7982 -1.1697 9 6 4.5298 5.3494 1.0731 10 8 4.7323 4.5941 2.0003 11 6 5.0548 6.7611 1.1226 12 16 5.9378 7.0220 2.6809 13 6 6.4297 8.7016 2.4764 14 1 6.1634 9.2366 1.5767 15 6 7.1592 9.3372 3.4715 16 7 7.5270 10.5918 3.3184 17 14 7.6192 8.4122 5.0279 18 1 8.9318 7.7444 4.8372 19 1 7.7092 9.3663 6.1624 20 1 6.5821 7.3907 5.3213 21 6 1.8730 3.5104 -0.0010 22 7 1.3177 2.3134 0.0005 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 4.0214 0.3673 -0.0005 27 1 5.1288 2.5892 0.0030 28 1 2.7929 6.4081 -1.0582 29 1 4.5621 6.4464 -1.2501 30 1 3.6050 5.1892 -2.0696 31 1 5.7359 6.9250 0.2876 32 1 4.2220 7.4611 1.0549 33 1 8.0366 11.0361 4.0140 34 1 1.2461 4.3898 -0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058270243.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:01 Heat of formation + Delta-G solvation = -23.261134 kcal Electronic energy + Delta-G solvation = -18995.206064 eV Core-core repulsion = 15827.616858 eV Total energy + Delta-G solvation = -3167.589206 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.05501 -39.64796 -37.87211 -35.48313 -32.62615 -32.47514 -30.93031 -28.87680 -27.44548 -26.69273 -25.65278 -23.64760 -23.20070 -19.92786 -18.62532 -17.77940 -17.36885 -17.24734 -16.39465 -16.11875 -15.44777 -15.02795 -14.78335 -14.45599 -14.16994 -13.70363 -13.56190 -13.31956 -13.28572 -12.89806 -12.82383 -12.53517 -12.15071 -12.05014 -11.41243 -11.29678 -11.03897 -10.69141 -10.24779 -10.06481 -9.89100 -9.66508 -9.11547 -9.03654 -8.55136 -8.34201 -6.97426 -6.32445 -4.05064 0.88888 1.05428 2.54626 2.76112 2.87325 3.10676 3.30578 3.47941 3.50930 3.54826 4.09682 4.29711 4.56196 4.69706 4.82721 4.87558 4.98862 5.05567 5.06679 5.07587 5.13140 5.26953 5.34537 5.45691 5.53173 5.54272 5.69298 5.92577 5.93588 6.07977 6.60292 7.00586 7.20102 7.59848 7.90531 8.27976 8.37791 9.13632 10.76681 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.038201 B = 0.003450 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.794704 B = 8114.731055 C = 8502.161530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.309 6.309 3 C 0.313 3.687 4 C -0.178 4.178 5 C -0.027 4.027 6 C 0.064 3.936 7 N -0.577 5.577 8 C 0.079 3.921 9 C 0.533 3.467 10 O -0.503 6.503 11 C -0.119 4.119 12 S -0.142 6.142 13 C -0.521 4.521 14 H 0.089 0.911 15 C 0.096 3.904 16 N -0.879 5.879 17 Si 0.856 3.144 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.235 1.235 21 C 0.141 3.859 22 N -0.531 5.531 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.095 0.905 26 H 0.145 0.855 27 H 0.144 0.856 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.271 0.729 34 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.936 -16.319 -11.293 23.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.216 6.216 3 C 0.134 3.866 4 C -0.199 4.199 5 C -0.054 4.054 6 C -0.030 4.030 7 N -0.310 5.310 8 C -0.063 4.063 9 C 0.322 3.678 10 O -0.376 6.376 11 C -0.270 4.270 12 S 0.084 5.916 13 C -0.669 4.669 14 H 0.107 0.893 15 C -0.113 4.113 16 N -0.516 5.516 17 Si 0.681 3.319 18 H -0.192 1.192 19 H -0.199 1.199 20 H -0.159 1.159 21 C -0.017 4.017 22 N -0.254 5.254 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.113 0.887 26 H 0.163 0.837 27 H 0.162 0.838 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.081 0.919 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -12.330 -17.593 -9.832 23.626 hybrid contribution 0.725 1.070 -0.433 1.363 sum -11.605 -16.523 -10.265 22.651 Atomic orbital electron populations 1.22854 0.77259 1.02863 1.02526 1.86250 1.22903 1.24458 1.87960 1.19838 0.89403 0.84659 0.92652 1.20977 0.91841 0.99187 1.07878 1.21595 1.01072 0.90486 0.92227 1.18404 0.92364 0.85765 1.06448 1.45363 1.54431 1.13805 1.17427 1.21928 1.03151 0.94330 0.86856 1.20536 0.76834 0.89532 0.80932 1.90730 1.55067 1.56096 1.35682 1.23310 1.03937 0.94486 1.05243 1.84844 1.69372 1.17820 1.19538 1.22286 1.40860 0.94673 1.09061 0.89296 1.24706 0.94051 0.94391 0.98114 1.69936 1.36601 1.10427 1.34613 0.86745 0.81253 0.81030 0.82895 1.19180 1.19890 1.15929 1.22497 0.91654 0.93935 0.93597 1.67308 1.40310 0.98376 1.19422 0.92228 0.92320 0.88693 0.83728 0.83816 0.91952 0.89813 0.90939 0.88199 0.88097 0.91890 0.82170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.38 101.05 1.05 1.38 16 2 O -0.31 -3.46 10.48 -18.98 -0.20 -3.66 16 3 C 0.31 3.87 7.49 -17.14 -0.13 3.74 16 4 C -0.18 -2.05 10.04 -39.30 -0.39 -2.45 16 5 C -0.03 -0.34 9.47 -39.13 -0.37 -0.71 16 6 C 0.06 0.83 4.85 -83.48 -0.40 0.42 16 7 N -0.58 -7.64 2.95 -120.67 -0.36 -8.00 16 8 C 0.08 0.73 10.11 59.85 0.61 1.33 16 9 C 0.53 9.35 7.58 -10.98 -0.08 9.27 16 10 O -0.50 -10.74 15.43 5.54 0.09 -10.66 16 11 C -0.12 -2.22 4.83 36.00 0.17 -2.04 16 12 S -0.14 -3.53 18.55 -107.50 -1.99 -5.52 16 13 C -0.52 -14.70 10.04 30.94 0.31 -14.39 16 14 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 15 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 16 N -0.88 -26.19 13.97 55.49 0.78 -25.41 16 17 Si 0.86 21.54 27.74 -169.99 -4.72 16.82 16 18 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 21 C 0.14 1.70 11.01 -17.35 -0.19 1.51 16 22 N -0.53 -6.68 9.20 -13.17 -0.12 -6.81 16 23 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 24 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 25 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 27 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.75 6.48 -51.93 -0.34 0.41 16 30 H 0.07 0.53 8.05 -51.93 -0.42 0.11 16 31 H 0.10 1.69 7.24 -51.91 -0.38 1.31 16 32 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 33 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.16 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 313.48 15.07 4.72 4.72 Total: -1.00 -34.17 313.48 -5.42 -39.59 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -4.09 Total: -1.82 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 0.47 Total: 0.74 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.30 Total: -40.22 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.11 Total: -14.32 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.72 Total: 16.82 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -1.99 Total: -5.52 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.17 -5.42 -39.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058270243.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.328 kcal (2) G-P(sol) polarization free energy of solvation -34.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds