Wall clock time and date at job start Tue Mar 31 2020 05:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 S 1.81003 * 109.47194 * 119.99905 * 2 1 3 5 5 C 1.76206 * 99.99950 * 295.00093 * 4 2 1 6 6 N 1.32558 * 119.21996 * 359.73190 * 5 4 2 7 7 C 1.32264 * 120.73343 * 179.71956 * 6 5 4 8 8 C 1.38624 * 119.20054 * 0.53999 * 7 6 5 9 9 C 1.38622 * 118.57093 * 359.73497 * 8 7 6 10 10 N 1.32260 * 119.20249 * 359.97438 * 9 8 7 11 11 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 12 12 O 1.20820 * 120.00042 * 264.99991 * 11 2 1 13 13 O 1.34230 * 119.99833 * 84.99996 * 11 2 1 14 14 C 1.45201 * 116.99879 * 180.02562 * 13 11 2 15 15 C 1.53000 * 109.47018 * 179.97438 * 14 13 11 16 16 C 1.50705 * 109.47208 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99802 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99863 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00202 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99553 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47163 * 90.00163 * 20 18 16 22 22 H 1.48497 * 109.46755 * 210.00115 * 20 18 16 23 23 H 1.48500 * 109.47022 * 329.99826 * 20 18 16 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 1.07990 * 120.40140 * 180.26882 * 7 6 5 28 28 H 1.07997 * 120.71570 * 179.70604 * 8 7 6 29 29 H 1.08000 * 120.40035 * 180.02562 * 9 8 7 30 30 H 1.08992 * 109.47362 * 299.99908 * 14 13 11 31 31 H 1.09004 * 109.47211 * 60.00414 * 14 13 11 32 32 H 1.08999 * 109.47587 * 300.00057 * 15 14 13 33 33 H 1.09000 * 109.46974 * 60.00274 * 15 14 13 34 34 H 0.96997 * 119.99976 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1333 -0.8532 1.4779 5 6 1.5439 0.2423 2.7258 6 7 0.8722 1.3280 2.3690 7 6 0.4114 2.1679 3.2810 8 6 0.6482 1.9070 4.6217 9 6 1.3587 0.7657 4.9596 10 7 1.7868 -0.0361 3.9988 11 6 2.0324 -0.7104 -1.2304 12 8 2.3198 -1.8827 -1.1761 13 8 2.1606 -0.0408 -2.3866 14 6 2.6497 -0.7890 -3.5309 15 6 2.7280 0.1344 -4.7483 16 6 3.2362 -0.6419 -5.9358 17 1 3.4787 -1.6893 -5.8326 18 6 3.3916 -0.0150 -7.1540 19 7 3.0968 1.2605 -7.2795 20 14 4.0209 -0.9776 -8.6261 21 1 2.8726 -1.5702 -9.3577 22 1 4.7673 -0.0666 -9.5307 23 1 4.9233 -2.0610 -8.1600 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 -0.1389 3.0485 2.9846 28 1 0.2873 2.5786 5.3865 29 1 1.5597 0.5335 5.9951 30 1 3.6412 -1.1841 -3.3098 31 1 1.9692 -1.6134 -3.7439 32 1 1.7363 0.5292 -4.9693 33 1 3.4083 0.9591 -4.5357 34 1 3.2058 1.7013 -8.1366 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062599475.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:07 Heat of formation + Delta-G solvation = -41.807821 kcal Electronic energy + Delta-G solvation = -18647.395394 eV Core-core repulsion = 15479.001943 eV Total energy + Delta-G solvation = -3168.393451 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.11920 -40.12105 -36.30103 -34.36766 -33.50714 -33.17504 -32.25704 -30.24448 -25.70653 -25.00796 -24.88662 -24.39926 -21.31128 -20.62522 -18.96610 -17.86533 -17.49380 -16.47021 -16.28239 -16.11889 -15.71764 -15.41596 -15.13711 -14.55576 -14.26874 -14.01008 -13.74918 -13.11043 -12.73549 -12.39025 -12.37886 -12.07278 -11.30288 -11.26126 -11.13964 -11.07813 -10.79494 -10.73177 -10.56903 -10.50462 -10.28138 -9.70884 -9.67505 -9.62192 -9.32471 -8.46181 -8.02971 -6.12150 -4.16718 0.39530 0.71433 0.81296 1.68862 2.41466 3.04868 3.27958 3.29776 3.34137 3.38536 3.81442 4.19793 4.29973 4.37084 4.67198 4.72292 4.73094 4.88220 5.05938 5.24580 5.35212 5.56212 5.64735 5.84264 6.01050 6.04237 6.06514 6.53069 6.58542 6.84306 7.49306 7.51818 7.59001 7.82595 8.04236 8.21225 8.88743 9.47874 10.99355 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.045978 B = 0.002860 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.846930 B = 9789.149932 C =10137.893657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 H 0.134 0.866 4 S 0.082 5.918 5 C 0.286 3.714 6 N -0.523 5.523 7 C 0.163 3.837 8 C -0.241 4.241 9 C 0.163 3.837 10 N -0.503 5.503 11 C 0.477 3.523 12 O -0.502 6.502 13 O -0.346 6.346 14 C 0.074 3.926 15 C 0.025 3.975 16 C -0.527 4.527 17 H 0.060 0.940 18 C 0.061 3.939 19 N -0.890 5.890 20 Si 0.900 3.100 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.272 1.272 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.173 0.827 28 H 0.149 0.851 29 H 0.172 0.828 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.029 0.971 33 H 0.029 0.971 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.845 2.867 24.224 25.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.221 4.221 3 H 0.152 0.848 4 S 0.319 5.681 5 C -0.089 4.089 6 N -0.241 5.241 7 C -0.005 4.005 8 C -0.267 4.267 9 C -0.006 4.006 10 N -0.220 5.220 11 C 0.317 3.683 12 O -0.391 6.391 13 O -0.262 6.262 14 C 0.002 3.998 15 C -0.012 4.012 16 C -0.565 4.565 17 H 0.078 0.922 18 C -0.141 4.141 19 N -0.528 5.528 20 Si 0.727 3.273 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.197 1.197 24 H 0.086 0.914 25 H 0.099 0.901 26 H 0.108 0.892 27 H 0.190 0.810 28 H 0.167 0.833 29 H 0.189 0.811 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.733 0.954 23.331 24.044 hybrid contribution -0.660 1.369 -0.194 1.532 sum -6.393 2.322 23.137 24.116 Atomic orbital electron populations 1.22035 0.89170 1.03730 1.05091 1.23145 1.02520 1.04698 0.91763 0.84778 1.86532 1.65707 1.24521 0.91364 1.25317 0.94202 0.94346 0.95019 1.68891 1.12579 1.04191 1.38466 1.23285 0.91834 0.96224 0.89203 1.22824 1.03993 1.00983 0.98943 1.23289 0.89257 0.88918 0.99152 1.68515 1.21773 1.32030 0.99636 1.22410 0.75138 0.85687 0.85076 1.90678 1.46186 1.16769 1.85441 1.86527 1.76273 1.44694 1.18712 1.23766 0.97958 0.95889 0.82196 1.19185 0.98776 0.94877 0.88399 1.20970 1.45062 0.96604 0.93871 0.92197 1.24982 0.95228 0.94964 0.98954 1.69970 1.47924 1.09746 1.25190 0.86462 0.79006 0.79725 0.82077 1.20454 1.21034 1.19686 0.91357 0.90132 0.89208 0.81036 0.83335 0.81063 0.91990 0.92011 0.95265 0.95262 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.94 37.16 0.33 -1.36 16 2 C -0.09 -1.27 2.65 -27.89 -0.07 -1.34 16 3 H 0.13 1.76 7.95 -51.92 -0.41 1.34 16 4 S 0.08 1.13 21.00 -107.50 -2.26 -1.13 16 5 C 0.29 3.53 7.65 -90.84 -0.69 2.84 16 6 N -0.52 -5.67 6.86 -13.44 -0.09 -5.77 16 7 C 0.16 1.22 11.30 -17.22 -0.19 1.02 16 8 C -0.24 -1.43 10.16 -39.30 -0.40 -1.82 16 9 C 0.16 1.24 11.30 -17.23 -0.19 1.04 16 10 N -0.50 -5.81 10.40 -13.44 -0.14 -5.95 16 11 C 0.48 8.48 7.08 36.00 0.25 8.74 16 12 O -0.50 -10.02 15.88 -18.75 -0.30 -10.31 16 13 O -0.35 -6.92 10.22 -39.26 -0.40 -7.32 16 14 C 0.07 1.65 5.40 37.16 0.20 1.85 16 15 C 0.02 0.65 5.35 -27.88 -0.15 0.50 16 16 C -0.53 -14.78 9.11 -34.44 -0.31 -15.10 16 17 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 20 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.09 0.98 5.65 -51.93 -0.29 0.69 16 27 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 28 H 0.15 0.37 8.06 -52.49 -0.42 -0.05 16 29 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 30 H 0.06 1.36 8.13 -51.93 -0.42 0.94 16 31 H 0.06 1.35 8.13 -51.93 -0.42 0.93 16 32 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 LS Contribution 315.57 15.07 4.76 4.76 Total: -1.00 -32.92 315.57 -8.10 -41.02 By element: Atomic # 1 Polarization: -0.03 SS G_CDS: -4.05 Total: -4.08 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -1.33 Total: -2.01 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.50 Total: -37.29 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.70 Total: -17.64 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.26 Total: -1.13 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.92 -8.10 -41.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062599475.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.786 kcal (2) G-P(sol) polarization free energy of solvation -32.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds