Wall clock time and date at job start Tue Mar 31 2020 06:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86808 * 119.99949 * 2 1 4 4 H 1.48496 * 109.47107 * 270.00173 * 3 2 1 5 5 H 1.48502 * 109.47061 * 30.00166 * 3 2 1 6 6 H 1.48498 * 109.47144 * 150.00005 * 3 2 1 7 7 C 1.37869 * 120.00354 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00158 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00651 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47642 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47077 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.46735 * 179.97438 * 11 10 9 13 13 C 1.34784 * 119.99949 * 179.97438 * 12 11 10 14 14 O 1.21585 * 119.99435 * 0.02562 * 13 12 11 15 15 N 1.34768 * 120.00144 * 180.27272 * 13 12 11 16 16 C 1.40003 * 120.00049 * 175.24088 * 15 13 12 17 17 C 1.38842 * 120.07470 * 34.70019 * 16 15 13 18 18 C 1.38117 * 119.94753 * 179.97438 * 17 16 15 19 19 C 1.38293 * 120.09011 * 359.97438 * 18 17 16 20 20 C 1.38264 * 120.14506 * 0.02571 * 19 18 17 21 21 C 1.38224 * 120.05861 * 359.69768 * 20 19 18 22 22 Cl 1.73602 * 120.04669 * 180.29599 * 21 20 19 23 23 H 0.97002 * 119.99693 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.46945 * 59.99448 * 9 7 2 25 25 H 1.09012 * 109.46543 * 300.00293 * 9 7 2 26 26 H 1.08993 * 109.47250 * 59.99292 * 10 9 7 27 27 H 1.08997 * 109.46573 * 299.99662 * 10 9 7 28 28 H 1.09002 * 109.47042 * 59.99527 * 11 10 9 29 29 H 1.08998 * 109.46746 * 299.99652 * 11 10 9 30 30 H 0.97002 * 120.00352 * 0.02562 * 12 11 10 31 31 H 0.97003 * 120.00065 * 355.25099 * 15 13 12 32 32 H 1.08002 * 120.02353 * 359.95161 * 17 16 15 33 33 H 1.08000 * 119.95799 * 179.97438 * 18 17 16 34 34 H 1.07999 * 119.92938 * 179.97438 * 19 18 17 35 35 H 1.08001 * 119.96923 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5516 -2.6364 0.0009 12 7 6.0399 -4.0176 0.0014 13 6 7.3651 -4.2639 0.0010 14 8 8.1551 -3.3397 0.0006 15 7 7.8143 -5.5345 -0.0041 16 6 9.1869 -5.7913 -0.1052 17 6 10.1011 -4.9321 0.4894 18 6 11.4546 -5.1882 0.3885 19 6 11.9002 -6.2995 -0.3035 20 6 10.9931 -7.1577 -0.8972 21 6 9.6370 -6.9103 -0.7951 22 17 8.4980 -7.9922 -1.5340 23 1 -0.4850 0.8401 0.0004 24 1 3.8745 -0.6799 0.8910 25 1 3.8752 -0.6803 -0.8889 26 1 3.6586 -3.1502 -0.8891 27 1 3.6580 -3.1504 0.8908 28 1 5.9150 -2.1226 0.8909 29 1 5.9149 -2.1226 -0.8890 30 1 5.4096 -4.7549 0.0014 31 1 7.1867 -6.2711 0.0621 32 1 9.7542 -4.0639 1.0301 33 1 12.1659 -4.5197 0.8506 34 1 12.9591 -6.4971 -0.3812 35 1 11.3443 -8.0245 -1.4372 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070940802.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:11 Heat of formation + Delta-G solvation = -20.594268 kcal Electronic energy + Delta-G solvation = -18628.510999 eV Core-core repulsion = 15458.993730 eV Total energy + Delta-G solvation = -3169.517269 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.81758 -38.98330 -36.75344 -35.83074 -34.84705 -33.38383 -31.57105 -30.99650 -29.65734 -27.06848 -23.75953 -23.03869 -22.29907 -21.03917 -20.31109 -18.55675 -17.96723 -16.87616 -16.63547 -15.97003 -15.39107 -15.19333 -14.56299 -14.47452 -14.21819 -14.05089 -13.75753 -13.63061 -12.72082 -12.38190 -12.16089 -11.96049 -11.88892 -11.76969 -11.26479 -11.11883 -10.94048 -10.66917 -10.31081 -10.03947 -9.87680 -9.72265 -9.25447 -9.09756 -9.02505 -8.57447 -8.34886 -6.08159 -4.07179 0.83700 1.01590 1.79419 2.45743 2.99294 3.30143 3.37795 3.41681 3.45782 4.05291 4.42732 4.49038 4.69615 4.94290 5.07363 5.14434 5.25912 5.44128 5.55404 5.61703 5.85835 5.88533 5.96506 6.12039 6.20344 6.28374 6.40644 6.56724 6.64178 6.73520 6.79212 7.19725 7.33131 7.72823 7.81344 8.40583 8.48271 8.95460 9.53944 11.05045 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.033521 B = 0.002867 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.108092 B = 9762.601759 C =10458.018968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.114 4.114 11 C 0.131 3.869 12 N -0.733 5.733 13 C 0.702 3.298 14 O -0.575 6.575 15 N -0.688 5.688 16 C 0.184 3.816 17 C -0.111 4.111 18 C -0.096 4.096 19 C -0.130 4.130 20 C -0.093 4.093 21 C -0.071 4.071 22 Cl -0.068 7.068 23 H 0.264 0.736 24 H 0.019 0.981 25 H 0.015 0.985 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.398 0.602 31 H 0.408 0.592 32 H 0.152 0.848 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.710 -16.467 -0.050 28.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.048 4.048 10 C -0.152 4.152 11 C 0.008 3.992 12 N -0.387 5.387 13 C 0.403 3.597 14 O -0.452 6.452 15 N -0.336 5.336 16 C 0.087 3.913 17 C -0.132 4.132 18 C -0.114 4.114 19 C -0.150 4.150 20 C -0.112 4.112 21 C -0.100 4.100 22 Cl -0.040 7.040 23 H 0.073 0.927 24 H 0.038 0.962 25 H 0.033 0.967 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.232 0.768 31 H 0.245 0.755 32 H 0.170 0.830 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 23.044 -15.514 -0.122 27.780 hybrid contribution -0.482 0.044 -0.135 0.502 sum 22.562 -15.470 -0.257 27.357 Atomic orbital electron populations 1.69913 1.06329 1.26984 1.50942 1.25028 0.94751 0.99254 0.94438 0.86773 0.80399 0.83503 0.78610 1.20227 1.21368 1.18867 1.21086 0.89282 0.94524 1.51182 0.91010 1.19499 0.97288 0.91330 0.96729 1.21721 0.90430 1.01166 1.01843 1.21611 0.95943 0.79471 1.02132 1.45365 1.04348 1.10632 1.78307 1.15930 0.83467 0.82349 0.77968 1.90915 1.54614 1.42775 1.56854 1.42673 1.05826 1.07963 1.77116 1.17256 0.83315 0.94453 0.96304 1.21423 0.92185 1.00277 0.99300 1.21205 0.95284 0.96907 0.98041 1.21091 0.99665 0.95078 0.99119 1.20857 0.90086 1.00364 0.99899 1.20768 0.91292 0.95431 1.02539 1.98367 1.60779 1.63437 1.81375 0.92673 0.96242 0.96685 0.92040 0.92013 0.91622 0.91637 0.76798 0.75523 0.83032 0.85063 0.85113 0.84728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.52 -14.58 9.66 -34.44 -0.33 -14.91 16 8 H 0.07 2.13 7.99 -52.48 -0.42 1.72 16 9 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 10 C -0.11 -2.05 5.27 -26.73 -0.14 -2.19 16 11 C 0.13 2.10 5.67 -4.04 -0.02 2.07 16 12 N -0.73 -9.69 5.56 -65.23 -0.36 -10.05 16 13 C 0.70 9.97 8.41 -86.92 -0.73 9.24 16 14 O -0.57 -10.06 13.76 5.29 0.07 -9.99 16 15 N -0.69 -7.75 5.06 -14.20 -0.07 -7.82 16 16 C 0.18 2.11 6.31 -83.64 -0.53 1.58 16 17 C -0.11 -1.28 8.70 -39.40 -0.34 -1.62 16 18 C -0.10 -0.85 10.04 -39.61 -0.40 -1.25 16 19 C -0.13 -1.00 10.04 -39.55 -0.40 -1.40 16 20 C -0.09 -0.77 9.82 -39.58 -0.39 -1.16 16 21 C -0.07 -0.71 6.34 -39.32 -0.25 -0.96 16 22 Cl -0.07 -0.63 27.95 -51.86 -1.45 -2.08 16 23 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 24 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 25 H 0.01 0.34 7.57 -51.92 -0.39 -0.05 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.40 4.17 8.49 -40.82 -0.35 3.82 16 31 H 0.41 3.60 8.08 -40.82 -0.33 3.27 16 32 H 0.15 1.99 6.19 -52.49 -0.33 1.67 16 33 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 35 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 314.85 15.07 4.74 4.74 Total: -1.00 -32.47 314.85 -9.02 -41.49 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -4.31 Total: 2.76 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -3.74 Total: -9.12 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: 0.34 Total: -44.71 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.07 Total: -9.99 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.45 Total: -2.08 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.47 -9.02 -41.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940802.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.896 kcal (2) G-P(sol) polarization free energy of solvation -32.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds