Wall clock time and date at job start Tue Mar 31 2020 06:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86808 * 119.99949 * 2 1 4 4 H 1.48496 * 109.47107 * 270.00173 * 3 2 1 5 5 H 1.48502 * 109.47061 * 30.00166 * 3 2 1 6 6 H 1.48498 * 109.47144 * 150.00005 * 3 2 1 7 7 C 1.37869 * 120.00354 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00158 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00651 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47642 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47077 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.46735 * 179.97438 * 11 10 9 13 13 C 1.34784 * 119.99949 * 179.97438 * 12 11 10 14 14 O 1.21585 * 119.99435 * 0.02562 * 13 12 11 15 15 N 1.34768 * 120.00144 * 180.27272 * 13 12 11 16 16 C 1.40003 * 120.00049 * 175.24088 * 15 13 12 17 17 C 1.38842 * 120.07470 * 34.70019 * 16 15 13 18 18 C 1.38117 * 119.94753 * 179.97438 * 17 16 15 19 19 C 1.38293 * 120.09011 * 359.97438 * 18 17 16 20 20 C 1.38264 * 120.14506 * 0.02571 * 19 18 17 21 21 C 1.38224 * 120.05861 * 359.69768 * 20 19 18 22 22 Cl 1.73602 * 120.04669 * 180.29599 * 21 20 19 23 23 H 0.97002 * 119.99693 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.46945 * 59.99448 * 9 7 2 25 25 H 1.09012 * 109.46543 * 300.00293 * 9 7 2 26 26 H 1.08993 * 109.47250 * 59.99292 * 10 9 7 27 27 H 1.08997 * 109.46573 * 299.99662 * 10 9 7 28 28 H 1.09002 * 109.47042 * 59.99527 * 11 10 9 29 29 H 1.08998 * 109.46746 * 299.99652 * 11 10 9 30 30 H 0.97002 * 120.00352 * 0.02562 * 12 11 10 31 31 H 0.97003 * 120.00065 * 355.25099 * 15 13 12 32 32 H 1.08002 * 120.02353 * 359.95161 * 17 16 15 33 33 H 1.08000 * 119.95799 * 179.97438 * 18 17 16 34 34 H 1.07999 * 119.92938 * 179.97438 * 19 18 17 35 35 H 1.08001 * 119.96923 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5516 -2.6364 0.0009 12 7 6.0399 -4.0176 0.0014 13 6 7.3651 -4.2639 0.0010 14 8 8.1551 -3.3397 0.0006 15 7 7.8143 -5.5345 -0.0041 16 6 9.1869 -5.7913 -0.1052 17 6 10.1011 -4.9321 0.4894 18 6 11.4546 -5.1882 0.3885 19 6 11.9002 -6.2995 -0.3035 20 6 10.9931 -7.1577 -0.8972 21 6 9.6370 -6.9103 -0.7951 22 17 8.4980 -7.9922 -1.5340 23 1 -0.4850 0.8401 0.0004 24 1 3.8745 -0.6799 0.8910 25 1 3.8752 -0.6803 -0.8889 26 1 3.6586 -3.1502 -0.8891 27 1 3.6580 -3.1504 0.8908 28 1 5.9150 -2.1226 0.8909 29 1 5.9149 -2.1226 -0.8890 30 1 5.4096 -4.7549 0.0014 31 1 7.1867 -6.2711 0.0621 32 1 9.7542 -4.0639 1.0301 33 1 12.1659 -4.5197 0.8506 34 1 12.9591 -6.4971 -0.3812 35 1 11.3443 -8.0245 -1.4372 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070940802.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:11 Heat of formation + Delta-G solvation = -41.722823 kcal Electronic energy + Delta-G solvation = -18629.427201 eV Core-core repulsion = 15458.993730 eV Total energy + Delta-G solvation = -3170.433471 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.78883 -39.84758 -37.48090 -37.14081 -35.86384 -35.18646 -33.32542 -31.70864 -30.61619 -28.69043 -25.06531 -23.98383 -23.31598 -22.30871 -21.72703 -19.57720 -19.09653 -18.64149 -17.53081 -17.03678 -16.55970 -16.25711 -16.08340 -15.67151 -15.26140 -15.15853 -14.77741 -14.63391 -14.47549 -13.81402 -13.68962 -13.05769 -12.75995 -12.71108 -12.62829 -12.45212 -12.00706 -11.90895 -11.78591 -11.62430 -11.54366 -11.32893 -11.17670 -10.75889 -10.21219 -9.80130 -9.15979 -8.29135 -6.33135 0.11283 0.28991 1.05897 1.37783 1.39237 1.46916 1.51120 1.94895 2.36840 2.71227 3.06821 3.07124 3.79177 4.05064 4.09366 4.21123 4.32043 4.36793 4.42888 4.50049 4.82894 4.89248 4.89775 5.03033 5.09990 5.23342 5.33579 5.39551 5.48070 5.53696 5.56383 5.65056 5.80444 5.89789 6.27624 6.75054 6.83833 7.31837 7.34586 8.87319 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.033521 B = 0.002867 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.108092 B = 9762.601759 C =10458.018968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.948 3.052 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.246 1.246 7 C -0.531 4.531 8 H 0.037 0.963 9 C -0.012 4.012 10 C -0.100 4.100 11 C 0.146 3.854 12 N -0.725 5.725 13 C 0.702 3.298 14 O -0.610 6.610 15 N -0.676 5.676 16 C 0.158 3.842 17 C -0.133 4.133 18 C -0.097 4.097 19 C -0.120 4.120 20 C -0.093 4.093 21 C -0.077 4.077 22 Cl -0.065 7.065 23 H 0.266 0.734 24 H 0.023 0.977 25 H 0.020 0.980 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.412 0.588 31 H 0.419 0.581 32 H 0.129 0.871 33 H 0.151 0.849 34 H 0.165 0.835 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.460 -17.152 -0.355 30.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.771 3.229 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.169 1.169 7 C -0.569 4.569 8 H 0.055 0.945 9 C -0.050 4.050 10 C -0.138 4.138 11 C 0.022 3.978 12 N -0.380 5.380 13 C 0.402 3.598 14 O -0.489 6.489 15 N -0.324 5.324 16 C 0.062 3.938 17 C -0.154 4.154 18 C -0.116 4.116 19 C -0.139 4.139 20 C -0.111 4.111 21 C -0.107 4.107 22 Cl -0.036 7.036 23 H 0.075 0.925 24 H 0.041 0.959 25 H 0.039 0.961 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.249 0.751 31 H 0.257 0.743 32 H 0.146 0.854 33 H 0.169 0.831 34 H 0.183 0.817 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 25.803 -16.265 -0.426 30.505 hybrid contribution -1.312 0.126 -0.046 1.318 sum 24.491 -16.139 -0.472 29.335 Atomic orbital electron populations 1.70063 1.08267 1.28131 1.52755 1.25994 0.95587 1.03488 0.94226 0.85692 0.79575 0.78434 0.79175 1.19293 1.21127 1.16923 1.21470 0.91956 0.93234 1.50202 0.94466 1.19461 0.93993 0.94580 0.96939 1.21484 0.91876 0.98213 1.02252 1.21232 0.94102 0.80813 1.01652 1.45083 1.04540 1.10120 1.78224 1.15999 0.83201 0.82864 0.77691 1.90894 1.55483 1.44131 1.58436 1.42457 1.06353 1.07171 1.76465 1.17448 0.83077 0.95531 0.97785 1.21384 0.93642 1.00055 1.00312 1.21486 0.94478 0.97710 0.97902 1.21492 1.01298 0.93773 0.97294 1.21245 0.89375 1.01080 0.99445 1.20902 0.92178 0.95085 1.02510 1.98366 1.60853 1.63122 1.81254 0.92526 0.95896 0.96135 0.91748 0.91594 0.92068 0.92287 0.75120 0.74262 0.85355 0.83099 0.81723 0.82344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.42 13.96 21.44 0.30 -59.12 16 2 C 0.00 0.22 5.47 84.65 0.46 0.68 16 3 Si 0.95 44.15 27.47 68.60 1.88 46.04 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 6 H -0.25 -10.63 6.54 99.48 0.65 -9.98 16 7 C -0.53 -29.94 9.66 25.60 0.25 -29.69 16 8 H 0.04 2.28 7.99 -2.91 -0.02 2.26 16 9 C -0.01 -0.53 4.04 29.85 0.12 -0.40 16 10 C -0.10 -3.53 5.27 30.59 0.16 -3.37 16 11 C 0.15 4.51 5.67 86.38 0.49 5.00 16 12 N -0.72 -18.48 5.56 -478.54 -2.66 -21.14 16 13 C 0.70 19.65 8.41 179.05 1.51 21.16 16 14 O -0.61 -21.48 13.76 -3.98 -0.05 -21.53 16 15 N -0.68 -14.86 5.06 -317.09 -1.61 -16.47 16 16 C 0.16 3.52 6.31 38.15 0.24 3.76 16 17 C -0.13 -3.03 8.70 22.39 0.19 -2.83 16 18 C -0.10 -1.56 10.04 22.25 0.22 -1.33 16 19 C -0.12 -1.45 10.04 22.29 0.22 -1.23 16 20 C -0.09 -1.28 9.82 22.27 0.22 -1.06 16 21 C -0.08 -1.42 6.34 22.44 0.14 -1.28 16 22 Cl -0.06 -1.09 27.95 -2.72 -0.08 -1.16 16 23 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 24 H 0.02 1.01 7.20 -2.39 -0.02 1.00 16 25 H 0.02 0.90 7.57 -2.38 -0.02 0.88 16 26 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.41 8.09 8.49 -92.71 -0.79 7.31 16 31 H 0.42 7.03 8.08 -92.71 -0.75 6.28 16 32 H 0.13 3.50 6.19 -2.91 -0.02 3.48 16 33 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 34 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 35 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -71.09 314.85 1.55 -69.54 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -0.47 Total: 14.45 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: 4.23 Total: -10.60 kcal Atomic # 7 Polarization: -92.76 SS G_CDS: -3.97 Total: -96.73 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.05 Total: -21.53 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.88 Total: 46.04 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.08 Total: -1.16 kcal Total: -71.09 1.55 -69.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940802.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.812 kcal (2) G-P(sol) polarization free energy of solvation -71.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds