Wall clock time and date at job start Tue Mar 31 2020 06:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00232 * 2 1 4 4 H 1.48494 * 109.47367 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46898 * 299.99614 * 3 2 1 6 6 H 1.48500 * 109.47120 * 59.99624 * 3 2 1 7 7 C 1.37878 * 119.99903 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99964 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00199 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47267 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46831 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.46657 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99446 * 180.02562 * 12 11 10 14 14 O 1.21586 * 120.00376 * 359.97438 * 13 12 11 15 15 N 1.34779 * 119.99542 * 179.97438 * 13 12 11 16 16 C 1.40003 * 119.99915 * 185.31272 * 15 13 12 17 17 C 1.38857 * 120.05490 * 33.45865 * 16 15 13 18 18 C 1.38120 * 119.94086 * 180.23310 * 17 16 15 19 19 C 1.38382 * 120.05437 * 359.47372 * 18 17 16 20 20 Cl 1.73598 * 119.93960 * 180.27870 * 19 18 17 21 21 C 1.38379 * 120.11276 * 0.24778 * 19 18 17 22 22 C 1.38108 * 120.06191 * 0.02562 * 21 19 18 23 23 H 0.97002 * 119.99833 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.46720 * 59.99697 * 9 7 2 25 25 H 1.09000 * 109.46774 * 299.99885 * 9 7 2 26 26 H 1.08995 * 109.46908 * 59.99792 * 10 9 7 27 27 H 1.08999 * 109.46893 * 300.00070 * 10 9 7 28 28 H 1.09003 * 109.46893 * 60.00130 * 11 10 9 29 29 H 1.09000 * 109.47038 * 300.00051 * 11 10 9 30 30 H 0.96995 * 120.00358 * 359.97438 * 12 11 10 31 31 H 0.96996 * 120.00410 * 5.31086 * 15 13 12 32 32 H 1.07997 * 120.03271 * 359.97438 * 17 16 15 33 33 H 1.07993 * 119.96996 * 179.74335 * 18 17 16 34 34 H 1.08004 * 119.96984 * 180.02562 * 21 19 18 35 35 H 1.08000 * 120.03318 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4802 -4.9872 0.0012 12 7 2.4322 -6.1007 0.0018 13 6 1.9829 -7.3713 0.0019 14 8 0.7875 -7.5935 0.0020 15 7 2.8587 -8.3957 0.0020 16 6 2.3960 -9.7123 -0.1102 17 6 1.2690 -9.9909 -0.8721 18 6 0.8118 -11.2899 -0.9772 19 6 1.4821 -12.3149 -0.3329 20 17 0.9089 -13.9475 -0.4729 21 6 2.6087 -12.0406 0.4223 22 6 3.0668 -10.7426 0.5352 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.8719 -3.6043 0.8905 27 1 2.8719 -3.6044 -0.8894 28 1 0.8532 -5.0451 -0.8886 29 1 0.8538 -5.0446 0.8914 30 1 3.3858 -5.9235 0.0014 31 1 3.8096 -8.2209 0.0797 32 1 0.7480 -9.1919 -1.3787 33 1 -0.0671 -11.5065 -1.5663 34 1 3.1303 -12.8424 0.9238 35 1 3.9464 -10.5292 1.1244 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070940803.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:15 Heat of formation + Delta-G solvation = -25.492337 kcal Electronic energy + Delta-G solvation = -18316.289459 eV Core-core repulsion = 15146.559795 eV Total energy + Delta-G solvation = -3169.729665 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.77149 -38.96704 -36.77285 -35.62361 -34.70281 -33.38067 -31.35541 -31.31738 -29.36103 -26.65794 -23.73536 -23.21984 -22.34572 -20.98585 -20.42756 -18.48151 -17.91094 -16.89740 -16.34227 -15.94470 -15.28189 -15.06353 -14.51639 -14.38287 -14.27804 -14.03245 -13.68540 -13.62368 -12.53983 -12.34067 -12.23332 -11.87314 -11.82757 -11.71345 -11.10757 -10.95989 -10.80061 -10.60910 -10.40439 -10.19687 -9.92868 -9.51504 -9.29582 -9.15822 -8.95758 -8.41141 -8.22948 -6.05501 -4.08769 0.86019 1.04107 1.91438 2.50436 2.99619 3.27405 3.35098 3.38250 3.50027 4.09267 4.41388 4.51715 4.61016 4.97728 5.09935 5.21432 5.30447 5.55193 5.65012 5.71389 5.71879 5.97820 6.01052 6.08879 6.17546 6.36024 6.53378 6.63454 6.68031 6.86514 6.94321 7.59375 7.71138 7.85350 7.92981 8.33303 8.45648 8.98057 9.55688 11.05770 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.068008 B = 0.002209 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.618045 B =12670.036505 C =12986.860206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.121 4.121 11 C 0.133 3.867 12 N -0.733 5.733 13 C 0.698 3.302 14 O -0.573 6.573 15 N -0.691 5.691 16 C 0.181 3.819 17 C -0.110 4.110 18 C -0.088 4.088 19 C -0.058 4.058 20 Cl -0.078 7.078 21 C -0.089 4.089 22 C -0.141 4.141 23 H 0.261 0.739 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.396 0.604 31 H 0.408 0.592 32 H 0.147 0.853 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.786 -24.687 -0.590 25.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C 0.010 3.990 12 N -0.387 5.387 13 C 0.399 3.601 14 O -0.449 6.449 15 N -0.339 5.339 16 C 0.085 3.915 17 C -0.131 4.131 18 C -0.107 4.107 19 C -0.085 4.085 20 Cl -0.049 7.049 21 C -0.109 4.109 22 C -0.163 4.163 23 H 0.071 0.929 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.230 0.770 31 H 0.243 0.757 32 H 0.165 0.835 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.464 -24.771 -0.611 25.608 hybrid contribution 1.307 1.041 0.100 1.673 sum 7.770 -23.730 -0.511 24.975 Atomic orbital electron populations 1.69976 1.06054 1.26630 1.50533 1.25040 0.94874 0.99355 0.95263 0.86520 0.80013 0.83724 0.77627 1.19773 1.20982 1.20989 1.21227 0.93018 0.90895 1.50942 0.92585 1.19036 0.93842 0.90790 0.97753 1.21904 0.99844 0.93175 1.00948 1.21615 0.91231 0.83937 1.02209 1.45435 1.10864 1.04162 1.78257 1.16012 0.85195 0.80809 0.78128 1.90955 1.13750 1.83664 1.56529 1.42743 1.10149 1.03669 1.77291 1.17593 0.95609 0.83046 0.95226 1.21229 0.96860 0.96631 0.98360 1.20960 0.99688 0.91070 0.98987 1.20863 0.98125 0.85795 1.03763 1.98360 1.88769 1.20572 1.97188 1.20774 0.95113 0.96683 0.98300 1.20801 1.02516 0.91620 1.01328 0.92940 0.96199 0.96192 0.92673 0.92650 0.91606 0.91636 0.76992 0.75674 0.83541 0.84656 0.84700 0.84795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.20 29.54 -169.99 -5.02 16.17 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.12 -2.24 5.27 -26.73 -0.14 -2.38 16 11 C 0.13 2.21 5.67 -4.04 -0.02 2.19 16 12 N -0.73 -9.60 5.56 -65.22 -0.36 -9.96 16 13 C 0.70 9.76 8.30 -86.92 -0.72 9.04 16 14 O -0.57 -10.29 14.04 5.29 0.07 -10.22 16 15 N -0.69 -6.99 5.35 -14.21 -0.08 -7.06 16 16 C 0.18 1.94 6.28 -83.67 -0.53 1.42 16 17 C -0.11 -1.30 8.65 -39.40 -0.34 -1.64 16 18 C -0.09 -0.91 9.82 -39.57 -0.39 -1.29 16 19 C -0.06 -0.56 6.32 -39.48 -0.25 -0.81 16 20 Cl -0.08 -0.70 28.95 -51.86 -1.50 -2.20 16 21 C -0.09 -0.75 9.82 -39.58 -0.39 -1.14 16 22 C -0.14 -1.19 9.96 -39.40 -0.39 -1.59 16 23 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.40 3.93 8.49 -40.82 -0.35 3.59 16 31 H 0.41 2.64 8.83 -40.82 -0.36 2.28 16 32 H 0.15 1.97 6.42 -52.49 -0.34 1.64 16 33 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 34 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 35 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 320.51 15.07 4.83 4.83 Total: -1.00 -32.23 320.51 -9.43 -41.66 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -4.39 Total: 1.44 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -3.72 Total: -8.91 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.30 Total: -42.77 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.07 Total: -10.22 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.50 Total: -2.20 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.23 -9.43 -41.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940803.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.165 kcal (2) G-P(sol) polarization free energy of solvation -32.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds