Wall clock time and date at job start Tue Mar 31 2020 06:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00108 * 2 1 4 4 H 1.48504 * 109.47469 * 240.00583 * 3 2 1 5 5 H 1.48508 * 109.47125 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47448 * 120.00037 * 3 2 1 7 7 C 1.37876 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00182 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99966 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47161 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46977 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.47006 * 180.02562 * 11 10 9 13 13 C 1.34770 * 119.99971 * 180.02562 * 12 11 10 14 14 O 1.21587 * 120.00369 * 0.02562 * 13 12 11 15 15 N 1.34782 * 120.00258 * 179.97438 * 13 12 11 16 16 C 1.39942 * 120.00314 * 185.31949 * 15 13 12 17 17 C 1.38895 * 120.05977 * 213.30728 * 16 15 13 18 18 C 1.38106 * 119.95254 * 180.02562 * 17 16 15 19 19 C 1.38279 * 120.08272 * 359.97438 * 18 17 16 20 20 C 1.38379 * 120.12773 * 0.02562 * 19 18 17 21 21 Cl 1.73600 * 119.97766 * 180.02562 * 20 19 18 22 22 C 1.38254 * 120.04266 * 0.02562 * 20 19 18 23 23 H 0.97004 * 120.00039 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47068 * 60.00278 * 9 7 2 25 25 H 1.09003 * 109.46983 * 299.99897 * 9 7 2 26 26 H 1.09003 * 109.46634 * 60.00342 * 10 9 7 27 27 H 1.08994 * 109.47551 * 300.00259 * 10 9 7 28 28 H 1.08995 * 109.47166 * 60.00527 * 11 10 9 29 29 H 1.09003 * 109.47254 * 300.00280 * 11 10 9 30 30 H 0.97005 * 120.00053 * 0.02562 * 12 11 10 31 31 H 0.96998 * 119.99314 * 5.32126 * 15 13 12 32 32 H 1.07998 * 120.02454 * 359.97438 * 17 16 15 33 33 H 1.07999 * 119.95579 * 180.02562 * 18 17 16 34 34 H 1.07999 * 119.93524 * 179.97438 * 19 18 17 35 35 H 1.08006 * 120.03910 * 180.27272 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 7 2.4323 -6.1006 -0.0018 13 6 1.9831 -7.3712 -0.0019 14 8 0.7877 -7.5935 -0.0020 15 7 2.8589 -8.3957 -0.0030 16 6 2.3963 -9.7117 -0.1155 17 6 3.0660 -10.7422 0.5316 18 6 2.6079 -12.0402 0.4187 19 6 1.4831 -12.3149 -0.3373 20 6 0.8133 -11.2908 -0.9834 21 17 -0.5987 -11.6400 -1.9310 22 6 1.2680 -9.9897 -0.8748 23 1 -0.4850 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8726 -3.6047 0.8878 27 1 2.8713 -3.6040 -0.8922 28 1 0.8528 -5.0447 -0.8905 29 1 0.8546 -5.0450 0.8895 30 1 3.3860 -5.9233 -0.0021 31 1 3.8099 -8.2208 0.0742 32 1 3.9448 -10.5288 1.1220 33 1 3.1283 -12.8415 0.9221 34 1 1.1272 -13.3308 -0.4244 35 1 0.7426 -9.1898 -1.3755 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070940804.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:05 Heat of formation + Delta-G solvation = -24.690075 kcal Electronic energy + Delta-G solvation = -18433.480756 eV Core-core repulsion = 15263.785880 eV Total energy + Delta-G solvation = -3169.694876 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.76382 -38.94142 -36.70653 -35.65547 -34.73436 -33.37912 -31.37622 -30.97372 -29.58468 -26.67212 -23.77552 -23.05545 -22.38432 -20.98332 -20.42501 -18.48961 -17.94842 -16.61893 -16.29260 -15.90520 -15.34511 -15.12967 -14.60775 -14.41124 -14.25873 -14.15693 -13.69282 -13.59234 -12.31248 -12.23987 -12.12470 -11.86836 -11.81207 -11.68432 -11.14819 -10.91615 -10.78077 -10.64987 -10.51605 -10.21663 -9.90881 -9.49392 -9.17277 -9.01637 -8.95262 -8.39437 -8.33271 -6.04010 -4.07506 0.87862 1.04050 1.92544 2.52727 3.01715 3.30299 3.35377 3.36954 3.50279 4.11400 4.42445 4.56360 4.79033 4.84607 5.10973 5.15482 5.31715 5.46812 5.60657 5.73057 5.89112 6.00914 6.05755 6.10367 6.12603 6.37337 6.54887 6.65074 6.68041 6.87635 6.95628 7.60225 7.72644 7.86738 7.94204 8.34562 8.47320 8.98871 9.56798 11.07225 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.036489 B = 0.002523 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.169451 B =11095.507340 C =11731.845463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.133 3.867 12 N -0.733 5.733 13 C 0.697 3.303 14 O -0.571 6.571 15 N -0.690 5.690 16 C 0.188 3.812 17 C -0.149 4.149 18 C -0.087 4.087 19 C -0.135 4.135 20 C -0.013 4.013 21 Cl -0.068 7.068 22 C -0.115 4.115 23 H 0.262 0.738 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.396 0.604 31 H 0.408 0.592 32 H 0.131 0.869 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.837 -24.932 -0.485 26.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.159 4.159 11 C 0.010 3.990 12 N -0.387 5.387 13 C 0.398 3.602 14 O -0.447 6.447 15 N -0.338 5.338 16 C 0.092 3.908 17 C -0.170 4.170 18 C -0.106 4.106 19 C -0.155 4.155 20 C -0.040 4.040 21 Cl -0.039 7.039 22 C -0.137 4.137 23 H 0.072 0.928 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.230 0.770 31 H 0.244 0.756 32 H 0.149 0.851 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.425 -24.894 -0.582 25.717 hybrid contribution 1.244 1.168 0.013 1.706 sum 7.669 -23.727 -0.570 24.942 Atomic orbital electron populations 1.69952 1.06067 1.26861 1.50339 1.25027 0.94860 0.99310 0.95232 0.86638 0.79561 0.83081 0.78580 1.20237 1.21251 1.20247 1.21154 0.92938 0.90932 1.51227 0.92700 1.19024 0.93823 0.90742 0.97742 1.21903 0.99844 0.93177 1.00928 1.21616 0.91236 0.83928 1.02231 1.45429 1.10851 1.04142 1.78273 1.16029 0.85212 0.80833 0.78166 1.90966 1.13736 1.83629 1.56412 1.42703 1.10151 1.03577 1.77378 1.17315 0.95135 0.83224 0.95149 1.20971 1.02490 0.92438 1.01115 1.20846 0.95633 0.96134 0.97984 1.20998 0.96546 0.98728 0.99209 1.20728 0.91083 0.94296 0.97943 1.98377 1.39374 1.95145 1.71039 1.21120 0.97491 0.95766 0.99288 0.92819 0.96206 0.96209 0.92684 0.92655 0.91595 0.91630 0.77002 0.75585 0.85107 0.84748 0.84996 0.83321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 8 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.26 5.27 -26.73 -0.14 -2.41 16 11 C 0.13 2.25 5.67 -4.04 -0.02 2.22 16 12 N -0.73 -9.83 5.56 -65.23 -0.36 -10.19 16 13 C 0.70 10.04 8.30 -86.92 -0.72 9.32 16 14 O -0.57 -10.60 14.02 5.29 0.07 -10.53 16 15 N -0.69 -7.22 5.35 -14.23 -0.08 -7.30 16 16 C 0.19 2.09 6.28 -83.70 -0.53 1.56 16 17 C -0.15 -1.24 9.96 -39.39 -0.39 -1.63 16 18 C -0.09 -0.66 10.04 -39.61 -0.40 -1.06 16 19 C -0.14 -1.20 9.83 -39.51 -0.39 -1.59 16 20 C -0.01 -0.15 6.32 -39.52 -0.25 -0.40 16 21 Cl -0.07 -0.76 28.95 -51.86 -1.50 -2.26 16 22 C -0.12 -1.48 8.44 -39.36 -0.33 -1.81 16 23 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.40 4.03 8.49 -40.82 -0.35 3.68 16 31 H 0.41 2.73 8.83 -40.82 -0.36 2.37 16 32 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 33 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 34 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.15 2.24 6.40 -52.48 -0.34 1.90 16 LS Contribution 320.49 15.07 4.83 4.83 Total: -1.00 -32.77 320.49 -9.43 -42.20 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -4.39 Total: 1.43 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -3.72 Total: -8.55 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.30 Total: -43.39 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.07 Total: -10.53 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.50 Total: -2.26 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.77 -9.43 -42.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940804.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.508 kcal (2) G-P(sol) polarization free energy of solvation -32.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds