Wall clock time and date at job start Tue Mar 31 2020 06:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38137 * 120.02068 * 2 1 4 4 C 1.38243 * 120.08088 * 180.23625 * 3 2 1 5 5 C 1.38426 * 120.12737 * 359.78984 * 4 3 2 6 6 Cl 1.73600 * 119.97725 * 179.97438 * 5 4 3 7 7 C 1.38211 * 120.04358 * 359.97438 * 5 4 3 8 8 C 1.38860 * 119.91604 * 359.97438 * 7 5 4 9 9 N 1.39925 * 120.06255 * 179.97438 * 8 7 5 10 10 C 1.34782 * 119.99717 * 335.17431 * 9 8 7 11 11 O 1.21284 * 120.00138 * 354.42715 * 10 9 8 12 12 C 1.50702 * 119.99761 * 174.42893 * 10 9 8 13 13 N 1.46501 * 109.46872 * 179.97438 * 12 10 9 14 14 C 1.46506 * 119.99461 * 90.00565 * 13 12 10 15 15 C 1.36934 * 120.00233 * 270.00091 * 13 12 10 16 16 H 1.07996 * 120.00040 * 24.95993 * 15 13 12 17 17 C 1.38818 * 119.99975 * 204.96357 * 15 13 12 18 18 N 1.31615 * 119.99853 * 5.21300 * 17 15 13 19 19 Si 1.86793 * 120.00018 * 185.22213 * 17 15 13 20 20 H 1.48493 * 109.47506 * 89.99509 * 19 17 15 21 21 H 1.48496 * 109.46987 * 209.99842 * 19 17 15 22 22 H 1.48509 * 109.47100 * 329.99556 * 19 17 15 23 23 H 1.08999 * 109.46696 * 270.20361 * 1 2 3 24 24 H 1.08987 * 109.47180 * 30.21010 * 1 2 3 25 25 H 1.09001 * 109.47216 * 150.20985 * 1 2 3 26 26 H 1.07995 * 119.95956 * 359.97438 * 3 2 1 27 27 H 1.08002 * 119.93583 * 179.76202 * 4 3 2 28 28 H 1.07999 * 120.03924 * 180.02562 * 7 5 4 29 29 H 0.97001 * 120.00578 * 155.17758 * 9 8 7 30 30 H 1.08993 * 109.47560 * 300.00088 * 12 10 9 31 31 H 1.09003 * 109.47194 * 60.00489 * 12 10 9 32 32 H 1.09000 * 109.47332 * 95.00611 * 14 13 12 33 33 H 1.09000 * 109.46413 * 215.00240 * 14 13 12 34 34 H 1.08995 * 109.46917 * 334.99942 * 14 13 12 35 35 H 0.97003 * 120.00480 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1961 0.0000 4 6 3.5806 1.1975 -0.0049 5 6 4.2767 0.0010 -0.0055 6 17 6.0126 0.0074 -0.0124 7 6 3.5904 -1.1987 -0.0006 8 6 2.2019 -1.2023 0.0054 9 7 1.5040 -2.4151 0.0099 10 6 2.0841 -3.5281 -0.4814 11 8 3.1693 -3.4597 -1.0188 12 6 1.3843 -4.8575 -0.3632 13 7 2.2139 -5.9018 -0.9694 14 6 3.1951 -6.6227 -0.1546 15 6 2.0723 -6.2040 -2.2974 16 1 1.6846 -5.4635 -2.9813 17 6 2.4268 -7.4622 -2.7645 18 7 2.8016 -8.3972 -1.9174 19 14 2.3721 -7.8283 -4.5954 20 1 3.6872 -7.5046 -5.2045 21 1 2.0709 -9.2674 -4.8036 22 1 1.3146 -7.0039 -5.2337 23 1 -0.3633 0.0037 1.0277 24 1 -0.3633 0.8880 -0.5170 25 1 -0.3634 -0.8919 -0.5106 26 1 1.6579 2.1311 -0.0004 27 1 4.1186 2.1340 -0.0088 28 1 4.1336 -2.1322 -0.0006 29 1 0.6028 -2.4550 0.3665 30 1 1.2194 -5.0891 0.6891 31 1 0.4254 -4.8105 -0.8794 32 1 2.7532 -7.5497 0.2108 33 1 4.0718 -6.8521 -0.7603 34 1 3.4904 -6.0026 0.6918 35 1 3.0490 -9.2765 -2.2436 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075828843.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:05 Heat of formation + Delta-G solvation = 12.103185 kcal Electronic energy + Delta-G solvation = -19595.292241 eV Core-core repulsion = 16427.192840 eV Total energy + Delta-G solvation = -3168.099401 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.40753 -38.39976 -36.50484 -35.26435 -34.35287 -32.40621 -31.40934 -29.94351 -27.37496 -26.54143 -25.81571 -23.27053 -21.78162 -21.13551 -19.88881 -17.82694 -16.76400 -16.63105 -15.85564 -15.36133 -14.90050 -14.60651 -14.32283 -13.96270 -13.61175 -13.48245 -13.26930 -12.90921 -12.81425 -12.70243 -11.79856 -11.64186 -11.62827 -11.39709 -11.16939 -10.90566 -10.88758 -10.71730 -10.41116 -10.20015 -10.02050 -9.94420 -9.28986 -8.61944 -8.53353 -7.91730 -6.82759 -5.75871 -3.25588 1.12774 1.32718 2.19231 3.11762 3.31985 3.41253 3.45205 3.46621 3.74043 4.47998 4.69757 4.83444 5.02648 5.17167 5.29974 5.36329 5.43573 5.48088 5.50578 5.66824 5.82032 5.91881 6.03023 6.14286 6.20240 6.33114 6.40146 6.48264 6.75273 7.03572 7.42507 7.67484 7.73485 7.81083 8.33673 8.68207 9.18506 9.77561 10.24956 11.28888 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.019904 B = 0.004401 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.414540 B = 6360.931981 C = 6967.407595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.127 4.127 3 C -0.089 4.089 4 C -0.141 4.141 5 C -0.016 4.016 6 Cl -0.074 7.074 7 C -0.126 4.126 8 C 0.178 3.822 9 N -0.682 5.682 10 C 0.470 3.530 11 O -0.495 6.495 12 C 0.137 3.863 13 N -0.573 5.573 14 C 0.165 3.835 15 C -0.255 4.255 16 H 0.066 0.934 17 C 0.008 3.992 18 N -0.908 5.908 19 Si 0.910 3.090 20 H -0.287 1.287 21 H -0.289 1.289 22 H -0.279 1.279 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.130 0.870 27 H 0.129 0.871 28 H 0.158 0.842 29 H 0.408 0.592 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.035 0.965 33 H 0.048 0.952 34 H -0.006 1.006 35 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.230 17.766 7.484 19.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.130 4.130 3 C -0.108 4.108 4 C -0.160 4.160 5 C -0.043 4.043 6 Cl -0.045 7.045 7 C -0.147 4.147 8 C 0.080 3.920 9 N -0.329 5.329 10 C 0.256 3.744 11 O -0.366 6.366 12 C 0.003 3.997 13 N -0.293 5.293 14 C 0.021 3.979 15 C -0.384 4.384 16 H 0.084 0.916 17 C -0.191 4.191 18 N -0.552 5.552 19 Si 0.740 3.260 20 H -0.213 1.213 21 H -0.216 1.216 22 H -0.204 1.204 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.148 0.852 27 H 0.147 0.853 28 H 0.175 0.825 29 H 0.244 0.756 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.013 0.987 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.214 17.400 7.029 19.040 hybrid contribution -0.089 -0.079 -0.882 0.890 sum -3.303 17.321 6.147 18.674 Atomic orbital electron populations 1.20711 0.90705 1.03216 1.02295 1.19720 0.96351 0.91767 1.05199 1.20693 0.93096 0.97142 0.99841 1.20892 0.94182 0.96611 1.04344 1.20723 0.84413 0.94709 1.04478 1.98360 1.10263 1.98948 1.96919 1.21351 0.93011 0.98702 1.01590 1.17628 0.90833 0.85893 0.97605 1.44320 1.19034 1.07050 1.62508 1.24171 0.87550 0.86639 0.76061 1.90620 1.21121 1.85539 1.39359 1.20696 0.94607 0.85513 0.98865 1.43614 1.40024 1.37520 1.08103 1.20889 0.92541 0.93071 0.91407 1.19145 1.40324 0.95368 0.83564 0.91586 1.25062 1.00539 0.95371 0.98097 1.70054 1.49322 1.03431 1.32442 0.86168 0.78013 0.77147 0.84663 1.21345 1.21559 1.20429 0.91086 0.91130 0.91426 0.85171 0.85343 0.82481 0.75645 0.90799 0.89942 0.94640 0.93354 0.98737 0.93602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 9.45 36.01 0.34 -0.60 16 2 C -0.13 -1.48 5.90 -104.42 -0.62 -2.10 16 3 C -0.09 -0.95 9.70 -39.62 -0.38 -1.33 16 4 C -0.14 -1.67 9.83 -39.51 -0.39 -2.06 16 5 C -0.02 -0.23 6.32 -39.52 -0.25 -0.48 16 6 Cl -0.07 -1.03 28.95 -51.86 -1.50 -2.53 16 7 C -0.13 -2.07 8.50 -39.36 -0.33 -2.40 16 8 C 0.18 2.60 6.41 -83.70 -0.54 2.07 16 9 N -0.68 -9.68 4.97 -9.87 -0.05 -9.73 16 10 C 0.47 8.83 7.70 -10.98 -0.08 8.75 16 11 O -0.50 -11.57 13.60 5.55 0.08 -11.49 16 12 C 0.14 2.62 6.13 -5.19 -0.03 2.58 16 13 N -0.57 -14.48 2.41 -182.50 -0.44 -14.92 16 14 C 0.17 4.17 8.95 59.85 0.54 4.70 16 15 C -0.25 -7.10 9.66 -15.06 -0.15 -7.24 16 16 H 0.07 1.84 7.83 -52.49 -0.41 1.42 16 17 C 0.01 0.21 5.24 -17.43 -0.09 0.12 16 18 N -0.91 -26.44 10.43 55.49 0.58 -25.86 16 19 Si 0.91 22.25 29.56 -169.99 -5.02 17.23 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.07 0.50 8.09 -51.94 -0.42 0.08 16 25 H 0.07 0.57 6.99 -51.93 -0.36 0.20 16 26 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 27 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 28 H 0.16 3.04 5.79 -52.49 -0.30 2.74 16 29 H 0.41 4.22 7.42 -40.82 -0.30 3.91 16 30 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 31 H 0.08 1.44 8.04 -51.93 -0.42 1.02 16 32 H 0.04 0.93 7.35 -51.93 -0.38 0.55 16 33 H 0.05 1.35 7.25 -51.93 -0.38 0.97 16 34 H -0.01 -0.13 8.03 -51.93 -0.42 -0.55 16 35 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 312.46 15.07 4.71 4.71 Total: -1.00 -32.90 312.46 -7.85 -40.75 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -4.22 Total: -0.17 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -1.99 Total: 2.02 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: 0.09 Total: -50.52 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.08 Total: -11.49 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -1.50 Total: -2.53 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.90 -7.85 -40.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075828843.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.855 kcal (2) G-P(sol) polarization free energy of solvation -32.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds